Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4062 and Echvi_4063 are separated by 718 nucleotides Echvi_4063 and Echvi_4064 are separated by 128 nucleotides Echvi_4064 and Echvi_4065 are separated by 78 nucleotides
Echvi_4062: Echvi_4062 - hypothetical protein, at 4,870,616 to 4,870,825
_4062
Echvi_4063: Echvi_4063 - GTP-binding protein TypA/BipA, at 4,871,544 to 4,873,349
_4063
Echvi_4064: Echvi_4064 - hypothetical protein, at 4,873,478 to 4,873,921
_4064
Echvi_4065: Echvi_4065 - hypothetical protein, at 4,874,000 to 4,874,452
_4065
Position (kb)
4871
4872
4873
4874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4870.602 kb on + strand at 4870.625 kb on + strand at 4870.663 kb on + strand, within Echvi_4062 at 4870.676 kb on - strand, within Echvi_4062 at 4870.736 kb on + strand, within Echvi_4062 at 4870.736 kb on + strand, within Echvi_4062 at 4870.737 kb on - strand, within Echvi_4062 at 4870.737 kb on - strand, within Echvi_4062 at 4870.763 kb on - strand, within Echvi_4062 at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.829 kb on + strand at 4870.830 kb on - strand at 4870.839 kb on + strand at 4870.868 kb on + strand at 4870.977 kb on + strand at 4871.001 kb on + strand at 4871.021 kb on + strand at 4871.022 kb on - strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.025 kb on + strand at 4871.027 kb on + strand at 4871.027 kb on + strand at 4871.037 kb on - strand at 4871.037 kb on - strand at 4871.065 kb on + strand at 4871.066 kb on - strand at 4871.072 kb on + strand at 4871.110 kb on - strand at 4871.115 kb on + strand at 4871.116 kb on - strand at 4871.116 kb on - strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.137 kb on + strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.138 kb on - strand at 4871.148 kb on - strand at 4871.158 kb on + strand at 4871.171 kb on + strand at 4871.172 kb on - strand at 4871.172 kb on - strand at 4871.177 kb on + strand at 4871.181 kb on + strand at 4871.181 kb on + strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.182 kb on - strand at 4871.219 kb on + strand at 4871.220 kb on - strand at 4871.261 kb on + strand at 4871.287 kb on + strand at 4871.304 kb on + strand at 4871.305 kb on - strand at 4871.305 kb on - strand at 4871.317 kb on - strand at 4871.325 kb on + strand at 4871.325 kb on + strand at 4871.326 kb on - strand at 4871.335 kb on + strand at 4871.350 kb on - strand at 4871.354 kb on + strand at 4871.354 kb on + strand at 4871.358 kb on + strand at 4871.359 kb on - strand at 4871.359 kb on - strand at 4871.390 kb on + strand at 4871.391 kb on - strand at 4871.406 kb on + strand at 4871.446 kb on - strand at 4871.474 kb on + strand at 4871.475 kb on - strand at 4871.516 kb on + strand at 4871.529 kb on + strand at 4873.365 kb on + strand at 4873.366 kb on - strand at 4873.368 kb on - strand at 4873.373 kb on - strand at 4873.373 kb on - strand at 4873.470 kb on + strand at 4873.471 kb on - strand at 4873.494 kb on + strand at 4873.497 kb on + strand at 4873.497 kb on + strand at 4873.497 kb on + strand at 4873.514 kb on + strand at 4873.611 kb on + strand, within Echvi_4064 at 4873.611 kb on + strand, within Echvi_4064 at 4873.621 kb on + strand, within Echvi_4064 at 4873.622 kb on - strand, within Echvi_4064 at 4873.639 kb on + strand, within Echvi_4064 at 4873.640 kb on - strand, within Echvi_4064 at 4873.668 kb on + strand, within Echvi_4064 at 4873.672 kb on + strand, within Echvi_4064 at 4873.672 kb on + strand, within Echvi_4064 at 4873.673 kb on - strand, within Echvi_4064 at 4873.674 kb on + strand, within Echvi_4064 at 4873.674 kb on + strand, within Echvi_4064 at 4873.674 kb on + strand, within Echvi_4064 at 4873.675 kb on - strand, within Echvi_4064 at 4873.675 kb on - strand, within Echvi_4064 at 4873.675 kb on - strand, within Echvi_4064 at 4873.713 kb on + strand, within Echvi_4064 at 4873.714 kb on - strand, within Echvi_4064 at 4873.739 kb on - strand, within Echvi_4064 at 4873.749 kb on + strand, within Echvi_4064 at 4873.749 kb on + strand, within Echvi_4064 at 4873.800 kb on + strand, within Echvi_4064 at 4873.811 kb on + strand, within Echvi_4064 at 4873.835 kb on - strand, within Echvi_4064 at 4873.842 kb on - strand, within Echvi_4064 at 4873.922 kb on - strand at 4873.922 kb on - strand at 4873.922 kb on - strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.996 kb on + strand at 4873.997 kb on - strand at 4874.001 kb on + strand at 4874.001 kb on + strand at 4874.001 kb on + strand at 4874.001 kb on + strand at 4874.002 kb on - strand at 4874.002 kb on - strand at 4874.002 kb on - strand at 4874.051 kb on - strand, within Echvi_4065 at 4874.110 kb on + strand, within Echvi_4065 at 4874.116 kb on + strand, within Echvi_4065 at 4874.145 kb on + strand, within Echvi_4065 at 4874.145 kb on + strand, within Echvi_4065 at 4874.146 kb on - strand, within Echvi_4065 at 4874.146 kb on - strand, within Echvi_4065 at 4874.146 kb on - strand, within Echvi_4065 at 4874.275 kb on - strand, within Echvi_4065 at 4874.288 kb on + strand, within Echvi_4065 at 4874.291 kb on + strand, within Echvi_4065 at 4874.292 kb on - strand, within Echvi_4065 at 4874.292 kb on - strand, within Echvi_4065
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 4,870,602 + -0.4 4,870,625 + +0.1 4,870,663 + Echvi_4062 0.22 -0.1 4,870,676 - Echvi_4062 0.29 -0.6 4,870,736 + Echvi_4062 0.57 +1.0 4,870,736 + Echvi_4062 0.57 +0.8 4,870,737 - Echvi_4062 0.58 +1.2 4,870,737 - Echvi_4062 0.58 -0.4 4,870,763 - Echvi_4062 0.70 +0.6 4,870,829 + -1.1 4,870,829 + -0.6 4,870,829 + +0.0 4,870,829 + +0.5 4,870,830 - +0.2 4,870,839 + +0.8 4,870,868 + -0.1 4,870,977 + +0.0 4,871,001 + -0.5 4,871,021 + +0.9 4,871,022 - -0.1 4,871,025 + -0.7 4,871,025 + -0.4 4,871,025 + -0.1 4,871,025 + -0.6 4,871,025 + -0.3 4,871,025 + +1.6 4,871,025 + -0.2 4,871,025 + +0.4 4,871,025 + -0.3 4,871,025 + -0.6 4,871,027 + -0.7 4,871,027 + -1.0 4,871,037 - -0.6 4,871,037 - -0.2 4,871,065 + +0.5 4,871,066 - -1.6 4,871,072 + -1.7 4,871,110 - -1.2 4,871,115 + -0.3 4,871,116 - -0.8 4,871,116 - -0.4 4,871,137 + -1.0 4,871,137 + -0.8 4,871,137 + +0.2 4,871,137 + +0.0 4,871,137 + +0.7 4,871,138 - -1.2 4,871,138 - +0.4 4,871,138 - -0.4 4,871,138 - -0.1 4,871,138 - -0.6 4,871,148 - +0.0 4,871,158 + +0.6 4,871,171 + -0.6 4,871,172 - -0.0 4,871,172 - -0.7 4,871,177 + -0.6 4,871,181 + -0.9 4,871,181 + -0.1 4,871,182 - +0.3 4,871,182 - -0.7 4,871,182 - -0.2 4,871,182 - -1.4 4,871,219 + -0.7 4,871,220 - -0.2 4,871,261 + +0.6 4,871,287 + +0.6 4,871,304 + -1.6 4,871,305 - -0.8 4,871,305 - -0.3 4,871,317 - -1.9 4,871,325 + +0.9 4,871,325 + +0.8 4,871,326 - +0.0 4,871,335 + -0.2 4,871,350 - -0.2 4,871,354 + -0.6 4,871,354 + +0.5 4,871,358 + +0.0 4,871,359 - +1.0 4,871,359 - -0.8 4,871,390 + +0.0 4,871,391 - -1.0 4,871,406 + -0.5 4,871,446 - +0.0 4,871,474 + -1.5 4,871,475 - -0.5 4,871,516 + +0.7 4,871,529 + +0.6 4,873,365 + -0.2 4,873,366 - -0.8 4,873,368 - -0.8 4,873,373 - -0.4 4,873,373 - -0.0 4,873,470 + +0.9 4,873,471 - -0.8 4,873,494 + +0.3 4,873,497 + +0.6 4,873,497 + +0.2 4,873,497 + -0.7 4,873,514 + +1.6 4,873,611 + Echvi_4064 0.30 -0.2 4,873,611 + Echvi_4064 0.30 +1.9 4,873,621 + Echvi_4064 0.32 +1.4 4,873,622 - Echvi_4064 0.32 +0.9 4,873,639 + Echvi_4064 0.36 +0.2 4,873,640 - Echvi_4064 0.36 +0.7 4,873,668 + Echvi_4064 0.43 -0.4 4,873,672 + Echvi_4064 0.44 -1.4 4,873,672 + Echvi_4064 0.44 +0.3 4,873,673 - Echvi_4064 0.44 -0.2 4,873,674 + Echvi_4064 0.44 -0.1 4,873,674 + Echvi_4064 0.44 +0.0 4,873,674 + Echvi_4064 0.44 -1.0 4,873,675 - Echvi_4064 0.44 -0.7 4,873,675 - Echvi_4064 0.44 -0.1 4,873,675 - Echvi_4064 0.44 +0.0 4,873,713 + Echvi_4064 0.53 -1.0 4,873,714 - Echvi_4064 0.53 +0.6 4,873,739 - Echvi_4064 0.59 -1.6 4,873,749 + Echvi_4064 0.61 +0.4 4,873,749 + Echvi_4064 0.61 +0.4 4,873,800 + Echvi_4064 0.73 -0.5 4,873,811 + Echvi_4064 0.75 +0.6 4,873,835 - Echvi_4064 0.80 +1.3 4,873,842 - Echvi_4064 0.82 +0.3 4,873,922 - -0.7 4,873,922 - +0.4 4,873,922 - -0.5 4,873,996 + -0.4 4,873,996 + +0.3 4,873,996 + -0.2 4,873,996 + -0.4 4,873,996 + +1.6 4,873,996 + +0.7 4,873,996 + +0.2 4,873,997 - +0.3 4,874,001 + +0.3 4,874,001 + +0.0 4,874,001 + -1.3 4,874,001 + -0.0 4,874,002 - +0.7 4,874,002 - -0.9 4,874,002 - -0.7 4,874,051 - Echvi_4065 0.11 +1.4 4,874,110 + Echvi_4065 0.24 -0.2 4,874,116 + Echvi_4065 0.26 -0.6 4,874,145 + Echvi_4065 0.32 +0.2 4,874,145 + Echvi_4065 0.32 +2.6 4,874,146 - Echvi_4065 0.32 -1.8 4,874,146 - Echvi_4065 0.32 -1.4 4,874,146 - Echvi_4065 0.32 -0.5 4,874,275 - Echvi_4065 0.61 -0.7 4,874,288 + Echvi_4065 0.64 -0.7 4,874,291 + Echvi_4065 0.64 +1.3 4,874,292 - Echvi_4065 0.64 -1.0 4,874,292 - Echvi_4065 0.64 -1.5
Or see this region's nucleotide sequence