Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4060

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4059 and Echvi_4060 are separated by 85 nucleotidesEchvi_4060 and Echvi_4061 are separated by 340 nucleotides Echvi_4059: Echvi_4059 - Predicted glycosyltransferases, at 4,867,331 to 4,868,338 _4059 Echvi_4060: Echvi_4060 - DNA-binding protein, YbaB/EbfC family, at 4,868,424 to 4,868,759 _4060 Echvi_4061: Echvi_4061 - histidyl-tRNA synthetase, at 4,869,100 to 4,870,473 _4061 Position (kb) 4868 4869Strain fitness (log2 ratio) -1 0 1 2at 4868.742 kb on - strandat 4868.786 kb on + strandat 4868.787 kb on - strandat 4868.853 kb on - strandat 4868.854 kb on + strandat 4868.859 kb on + strandat 4868.862 kb on + strandat 4868.912 kb on + strandat 4868.913 kb on - strandat 4868.913 kb on - strandat 4868.951 kb on + strandat 4868.951 kb on + strandat 4868.952 kb on - strandat 4868.955 kb on + strandat 4868.956 kb on - strandat 4868.957 kb on + strandat 4868.957 kb on + strandat 4868.987 kb on - strandat 4869.079 kb on + strandat 4869.080 kb on - strandat 4869.084 kb on + strandat 4869.084 kb on + strandat 4869.084 kb on + strandat 4869.084 kb on + strandat 4869.085 kb on - strandat 4869.085 kb on - strandat 4869.085 kb on - strandat 4869.085 kb on - strandat 4869.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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4,868,742 - +0.4
4,868,786 + -0.5
4,868,787 - +2.0
4,868,853 - -0.7
4,868,854 + -0.1
4,868,859 + +0.6
4,868,862 + +1.2
4,868,912 + +0.9
4,868,913 - +0.1
4,868,913 - -0.3
4,868,951 + -0.7
4,868,951 + +0.2
4,868,952 - +0.3
4,868,955 + +0.1
4,868,956 - +0.3
4,868,957 + -0.3
4,868,957 + +2.2
4,868,987 - -0.6
4,869,079 + -0.1
4,869,080 - -0.1
4,869,084 + +0.9
4,869,084 + +1.0
4,869,084 + -1.2
4,869,084 + +0.0
4,869,085 - -0.4
4,869,085 - -0.2
4,869,085 - +0.0
4,869,085 - +1.2
4,869,085 - -0.3

Or see this region's nucleotide sequence