Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3544

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3543 and Echvi_3544 overlap by 59 nucleotidesEchvi_3544 and Echvi_3545 are separated by 107 nucleotides Echvi_3543: Echvi_3543 - Uncharacterized protein conserved in bacteria, at 4,202,025 to 4,203,710 _3543 Echvi_3544: Echvi_3544 - hypothetical protein, at 4,203,652 to 4,203,891 _3544 Echvi_3545: Echvi_3545 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 4,203,999 to 4,204,904 _3545 Position (kb) 4203 4204Strain fitness (log2 ratio) -2 -1 0 1 2at 4202.776 kb on + strand, within Echvi_3543at 4202.777 kb on - strand, within Echvi_3543at 4202.803 kb on + strand, within Echvi_3543at 4202.803 kb on + strand, within Echvi_3543at 4202.803 kb on + strand, within Echvi_3543at 4202.803 kb on + strand, within Echvi_3543at 4202.803 kb on + strand, within Echvi_3543at 4202.804 kb on - strand, within Echvi_3543at 4202.804 kb on - strand, within Echvi_3543at 4202.804 kb on - strand, within Echvi_3543at 4202.804 kb on - strand, within Echvi_3543at 4202.836 kb on + strand, within Echvi_3543at 4202.836 kb on + strand, within Echvi_3543at 4202.837 kb on - strand, within Echvi_3543at 4202.837 kb on - strand, within Echvi_3543at 4202.837 kb on - strand, within Echvi_3543at 4202.967 kb on - strand, within Echvi_3543at 4202.969 kb on - strand, within Echvi_3543at 4203.158 kb on - strand, within Echvi_3543at 4203.166 kb on + strand, within Echvi_3543at 4203.166 kb on + strand, within Echvi_3543at 4203.246 kb on - strand, within Echvi_3543at 4203.246 kb on - strand, within Echvi_3543at 4203.247 kb on + strand, within Echvi_3543at 4203.247 kb on + strand, within Echvi_3543at 4203.248 kb on - strand, within Echvi_3543at 4203.248 kb on - strand, within Echvi_3543at 4203.264 kb on + strand, within Echvi_3543at 4203.265 kb on - strand, within Echvi_3543at 4203.265 kb on - strand, within Echvi_3543at 4203.359 kb on + strand, within Echvi_3543at 4203.361 kb on + strand, within Echvi_3543at 4203.361 kb on + strand, within Echvi_3543at 4203.361 kb on + strand, within Echvi_3543at 4203.362 kb on - strand, within Echvi_3543at 4203.362 kb on - strand, within Echvi_3543at 4203.411 kb on - strand, within Echvi_3543at 4203.475 kb on + strand, within Echvi_3543at 4203.485 kb on + strand, within Echvi_3543at 4203.486 kb on - strand, within Echvi_3543at 4203.509 kb on - strand, within Echvi_3543at 4203.599 kb on + strandat 4203.600 kb on - strandat 4203.643 kb on + strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.644 kb on - strandat 4203.645 kb on + strandat 4203.645 kb on + strandat 4203.645 kb on + strandat 4203.645 kb on + strandat 4203.645 kb on + strandat 4203.646 kb on - strandat 4203.653 kb on + strandat 4203.654 kb on - strandat 4203.696 kb on + strandat 4203.719 kb on + strand, within Echvi_3544at 4203.719 kb on + strand, within Echvi_3544at 4203.719 kb on + strand, within Echvi_3544at 4203.719 kb on + strand, within Echvi_3544at 4203.734 kb on - strand, within Echvi_3544at 4203.739 kb on + strand, within Echvi_3544at 4203.739 kb on + strand, within Echvi_3544at 4203.740 kb on - strand, within Echvi_3544at 4203.764 kb on - strand, within Echvi_3544at 4203.765 kb on + strand, within Echvi_3544at 4203.765 kb on + strand, within Echvi_3544at 4203.765 kb on + strand, within Echvi_3544at 4203.766 kb on - strand, within Echvi_3544at 4203.766 kb on - strand, within Echvi_3544at 4203.766 kb on - strand, within Echvi_3544at 4203.768 kb on + strand, within Echvi_3544at 4203.805 kb on + strand, within Echvi_3544at 4203.806 kb on - strand, within Echvi_3544at 4203.806 kb on - strand, within Echvi_3544at 4203.806 kb on - strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.807 kb on + strand, within Echvi_3544at 4203.808 kb on - strand, within Echvi_3544at 4203.808 kb on - strand, within Echvi_3544at 4203.808 kb on - strand, within Echvi_3544at 4203.808 kb on - strand, within Echvi_3544at 4203.810 kb on + strand, within Echvi_3544at 4203.824 kb on - strand, within Echvi_3544at 4203.904 kb on + strandat 4203.905 kb on - strandat 4203.905 kb on - strandat 4203.950 kb on + strandat 4203.951 kb on - strandat 4203.958 kb on + strandat 4203.958 kb on + strandat 4203.958 kb on + strandat 4203.962 kb on - strandat 4203.962 kb on - strandat 4203.976 kb on + strandat 4204.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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4,202,776 + Echvi_3543 0.45 -1.0
4,202,777 - Echvi_3543 0.45 +0.6
4,202,803 + Echvi_3543 0.46 +0.1
4,202,803 + Echvi_3543 0.46 -1.7
4,202,803 + Echvi_3543 0.46 -1.0
4,202,803 + Echvi_3543 0.46 +0.5
4,202,803 + Echvi_3543 0.46 +0.5
4,202,804 - Echvi_3543 0.46 +0.4
4,202,804 - Echvi_3543 0.46 +0.2
4,202,804 - Echvi_3543 0.46 -0.9
4,202,804 - Echvi_3543 0.46 +0.8
4,202,836 + Echvi_3543 0.48 +0.9
4,202,836 + Echvi_3543 0.48 -0.1
4,202,837 - Echvi_3543 0.48 +0.5
4,202,837 - Echvi_3543 0.48 +0.9
4,202,837 - Echvi_3543 0.48 -1.4
4,202,967 - Echvi_3543 0.56 -0.0
4,202,969 - Echvi_3543 0.56 +0.1
4,203,158 - Echvi_3543 0.67 -0.3
4,203,166 + Echvi_3543 0.68 -0.9
4,203,166 + Echvi_3543 0.68 -0.0
4,203,246 - Echvi_3543 0.72 +0.5
4,203,246 - Echvi_3543 0.72 +0.9
4,203,247 + Echvi_3543 0.72 +0.2
4,203,247 + Echvi_3543 0.72 -0.2
4,203,248 - Echvi_3543 0.73 -2.1
4,203,248 - Echvi_3543 0.73 -0.1
4,203,264 + Echvi_3543 0.73 -0.4
4,203,265 - Echvi_3543 0.74 -0.1
4,203,265 - Echvi_3543 0.74 +0.5
4,203,359 + Echvi_3543 0.79 -1.1
4,203,361 + Echvi_3543 0.79 -0.1
4,203,361 + Echvi_3543 0.79 -0.5
4,203,361 + Echvi_3543 0.79 -0.9
4,203,362 - Echvi_3543 0.79 +0.7
4,203,362 - Echvi_3543 0.79 +0.2
4,203,411 - Echvi_3543 0.82 +0.1
4,203,475 + Echvi_3543 0.86 -0.6
4,203,485 + Echvi_3543 0.87 -0.9
4,203,486 - Echvi_3543 0.87 -0.3
4,203,509 - Echvi_3543 0.88 +0.2
4,203,599 + -0.2
4,203,600 - +0.1
4,203,643 + +0.1
4,203,644 - +0.6
4,203,644 - +0.2
4,203,644 - +0.7
4,203,644 - -0.2
4,203,644 - -0.0
4,203,644 - -0.0
4,203,644 - -0.3
4,203,645 + -1.4
4,203,645 + -0.9
4,203,645 + -1.1
4,203,645 + +0.6
4,203,645 + -0.8
4,203,646 - -0.1
4,203,653 + -1.7
4,203,654 - +0.5
4,203,696 + +1.0
4,203,719 + Echvi_3544 0.28 -0.5
4,203,719 + Echvi_3544 0.28 -0.9
4,203,719 + Echvi_3544 0.28 -0.7
4,203,719 + Echvi_3544 0.28 +1.0
4,203,734 - Echvi_3544 0.34 -1.6
4,203,739 + Echvi_3544 0.36 -2.0
4,203,739 + Echvi_3544 0.36 +0.1
4,203,740 - Echvi_3544 0.37 +0.2
4,203,764 - Echvi_3544 0.47 -0.7
4,203,765 + Echvi_3544 0.47 -1.2
4,203,765 + Echvi_3544 0.47 -2.2
4,203,765 + Echvi_3544 0.47 -0.8
4,203,766 - Echvi_3544 0.47 -0.1
4,203,766 - Echvi_3544 0.47 -1.3
4,203,766 - Echvi_3544 0.47 -0.3
4,203,768 + Echvi_3544 0.48 -0.5
4,203,805 + Echvi_3544 0.64 -1.4
4,203,806 - Echvi_3544 0.64 -0.2
4,203,806 - Echvi_3544 0.64 +0.1
4,203,806 - Echvi_3544 0.64 -0.4
4,203,807 + Echvi_3544 0.65 -2.0
4,203,807 + Echvi_3544 0.65 -0.5
4,203,807 + Echvi_3544 0.65 +2.5
4,203,807 + Echvi_3544 0.65 +1.1
4,203,807 + Echvi_3544 0.65 -1.9
4,203,807 + Echvi_3544 0.65 -0.2
4,203,807 + Echvi_3544 0.65 -0.9
4,203,807 + Echvi_3544 0.65 -0.9
4,203,808 - Echvi_3544 0.65 +0.3
4,203,808 - Echvi_3544 0.65 +0.4
4,203,808 - Echvi_3544 0.65 -0.4
4,203,808 - Echvi_3544 0.65 +0.2
4,203,810 + Echvi_3544 0.66 -1.6
4,203,824 - Echvi_3544 0.72 -0.5
4,203,904 + +0.2
4,203,905 - +0.1
4,203,905 - -0.1
4,203,950 + -1.2
4,203,951 - -0.6
4,203,958 + -2.6
4,203,958 + -1.1
4,203,958 + -1.0
4,203,962 - -0.4
4,203,962 - +0.3
4,203,976 + -0.6
4,204,026 + +0.5

Or see this region's nucleotide sequence