Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3406 and Echvi_3407 are separated by 182 nucleotides Echvi_3407 and Echvi_3408 are separated by 24 nucleotides Echvi_3408 and Echvi_3409 are separated by 111 nucleotides
Echvi_3406: Echvi_3406 - TonB-dependent siderophore receptor, at 4,030,041 to 4,032,401
_3406
Echvi_3407: Echvi_3407 - hypothetical protein, at 4,032,584 to 4,032,907
_3407
Echvi_3408: Echvi_3408 - Nickel uptake substrate-specific transmembrane region., at 4,032,932 to 4,033,645
_3408
Echvi_3409: Echvi_3409 - Signal transduction histidine kinase, at 4,033,757 to 4,034,887
_3409
Position (kb)
4032
4033 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4031.597 kb on - strand, within Echvi_3406 at 4031.613 kb on + strand, within Echvi_3406 at 4031.614 kb on - strand, within Echvi_3406 at 4031.615 kb on + strand, within Echvi_3406 at 4031.615 kb on + strand, within Echvi_3406 at 4031.615 kb on + strand, within Echvi_3406 at 4031.616 kb on - strand, within Echvi_3406 at 4031.616 kb on - strand, within Echvi_3406 at 4031.619 kb on + strand, within Echvi_3406 at 4031.619 kb on + strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.620 kb on - strand, within Echvi_3406 at 4031.814 kb on - strand, within Echvi_3406 at 4031.964 kb on - strand, within Echvi_3406 at 4031.976 kb on - strand, within Echvi_3406 at 4032.004 kb on - strand, within Echvi_3406 at 4032.004 kb on - strand, within Echvi_3406 at 4032.011 kb on + strand, within Echvi_3406 at 4032.115 kb on - strand, within Echvi_3406 at 4032.290 kb on - strand at 4032.340 kb on - strand at 4032.340 kb on - strand at 4032.343 kb on - strand at 4032.346 kb on - strand at 4032.346 kb on - strand at 4032.349 kb on - strand at 4032.381 kb on - strand at 4032.386 kb on - strand at 4032.469 kb on - strand at 4032.527 kb on - strand at 4032.591 kb on - strand at 4032.591 kb on - strand at 4032.660 kb on + strand, within Echvi_3407 at 4032.671 kb on + strand, within Echvi_3407 at 4032.672 kb on - strand, within Echvi_3407 at 4032.695 kb on - strand, within Echvi_3407 at 4032.725 kb on + strand, within Echvi_3407 at 4032.728 kb on - strand, within Echvi_3407 at 4032.729 kb on + strand, within Echvi_3407 at 4032.729 kb on + strand, within Echvi_3407 at 4032.730 kb on - strand, within Echvi_3407 at 4032.730 kb on - strand, within Echvi_3407 at 4032.805 kb on + strand, within Echvi_3407 at 4032.806 kb on - strand, within Echvi_3407 at 4032.864 kb on - strand, within Echvi_3407 at 4032.864 kb on - strand, within Echvi_3407 at 4032.905 kb on + strand at 4032.915 kb on + strand at 4032.954 kb on + strand at 4032.955 kb on - strand at 4032.969 kb on + strand at 4033.073 kb on + strand, within Echvi_3408 at 4033.109 kb on + strand, within Echvi_3408 at 4033.110 kb on - strand, within Echvi_3408 at 4033.135 kb on - strand, within Echvi_3408 at 4033.193 kb on + strand, within Echvi_3408 at 4033.205 kb on + strand, within Echvi_3408 at 4033.309 kb on - strand, within Echvi_3408 at 4033.309 kb on - strand, within Echvi_3408 at 4033.309 kb on - strand, within Echvi_3408 at 4033.334 kb on - strand, within Echvi_3408 at 4033.349 kb on - strand, within Echvi_3408 at 4033.491 kb on - strand, within Echvi_3408 at 4033.491 kb on - strand, within Echvi_3408 at 4033.491 kb on - strand, within Echvi_3408 at 4033.495 kb on - strand, within Echvi_3408 at 4033.495 kb on - strand, within Echvi_3408 at 4033.526 kb on - strand, within Echvi_3408 at 4033.545 kb on - strand, within Echvi_3408 at 4033.560 kb on + strand, within Echvi_3408 at 4033.561 kb on - strand, within Echvi_3408 at 4033.561 kb on - strand, within Echvi_3408 at 4033.589 kb on + strand at 4033.672 kb on + strand at 4033.692 kb on + strand at 4033.693 kb on - strand at 4033.704 kb on - strand at 4033.726 kb on + strand at 4033.731 kb on - strand at 4033.731 kb on - strand at 4033.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 4,031,597 - Echvi_3406 0.66 -0.9 4,031,613 + Echvi_3406 0.67 -0.7 4,031,614 - Echvi_3406 0.67 -0.3 4,031,615 + Echvi_3406 0.67 -0.9 4,031,615 + Echvi_3406 0.67 -0.3 4,031,615 + Echvi_3406 0.67 -1.2 4,031,616 - Echvi_3406 0.67 -0.5 4,031,616 - Echvi_3406 0.67 +2.2 4,031,619 + Echvi_3406 0.67 +1.5 4,031,619 + Echvi_3406 0.67 -0.7 4,031,620 - Echvi_3406 0.67 -0.7 4,031,620 - Echvi_3406 0.67 -0.0 4,031,620 - Echvi_3406 0.67 +0.4 4,031,620 - Echvi_3406 0.67 -0.0 4,031,620 - Echvi_3406 0.67 +0.6 4,031,620 - Echvi_3406 0.67 +0.1 4,031,620 - Echvi_3406 0.67 +0.5 4,031,620 - Echvi_3406 0.67 -1.1 4,031,814 - Echvi_3406 0.75 -0.5 4,031,964 - Echvi_3406 0.81 -0.3 4,031,976 - Echvi_3406 0.82 -0.5 4,032,004 - Echvi_3406 0.83 +0.2 4,032,004 - Echvi_3406 0.83 -0.2 4,032,011 + Echvi_3406 0.83 -0.6 4,032,115 - Echvi_3406 0.88 -0.3 4,032,290 - -0.3 4,032,340 - +0.6 4,032,340 - -0.1 4,032,343 - +1.5 4,032,346 - +0.3 4,032,346 - +0.1 4,032,349 - +0.6 4,032,381 - +0.0 4,032,386 - +0.9 4,032,469 - -0.1 4,032,527 - -0.2 4,032,591 - -0.4 4,032,591 - -0.4 4,032,660 + Echvi_3407 0.23 -1.6 4,032,671 + Echvi_3407 0.27 +0.5 4,032,672 - Echvi_3407 0.27 -0.1 4,032,695 - Echvi_3407 0.34 -0.1 4,032,725 + Echvi_3407 0.44 -2.3 4,032,728 - Echvi_3407 0.44 +0.3 4,032,729 + Echvi_3407 0.45 -1.3 4,032,729 + Echvi_3407 0.45 -0.5 4,032,730 - Echvi_3407 0.45 -2.7 4,032,730 - Echvi_3407 0.45 -0.1 4,032,805 + Echvi_3407 0.68 +0.2 4,032,806 - Echvi_3407 0.69 -0.8 4,032,864 - Echvi_3407 0.86 -1.8 4,032,864 - Echvi_3407 0.86 +0.2 4,032,905 + +0.7 4,032,915 + -1.8 4,032,954 + -0.1 4,032,955 - +1.5 4,032,969 + -0.1 4,033,073 + Echvi_3408 0.20 -0.7 4,033,109 + Echvi_3408 0.25 +0.1 4,033,110 - Echvi_3408 0.25 -0.4 4,033,135 - Echvi_3408 0.28 +0.4 4,033,193 + Echvi_3408 0.37 +1.1 4,033,205 + Echvi_3408 0.38 -1.9 4,033,309 - Echvi_3408 0.53 -0.2 4,033,309 - Echvi_3408 0.53 +1.5 4,033,309 - Echvi_3408 0.53 -2.0 4,033,334 - Echvi_3408 0.56 -0.7 4,033,349 - Echvi_3408 0.58 -0.3 4,033,491 - Echvi_3408 0.78 +1.0 4,033,491 - Echvi_3408 0.78 +0.1 4,033,491 - Echvi_3408 0.78 -0.2 4,033,495 - Echvi_3408 0.79 -0.8 4,033,495 - Echvi_3408 0.79 +0.0 4,033,526 - Echvi_3408 0.83 +0.8 4,033,545 - Echvi_3408 0.86 -0.0 4,033,560 + Echvi_3408 0.88 -1.0 4,033,561 - Echvi_3408 0.88 -0.2 4,033,561 - Echvi_3408 0.88 -0.7 4,033,589 + -0.5 4,033,672 + +0.7 4,033,692 + +0.3 4,033,693 - -0.3 4,033,704 - +0.9 4,033,726 + -0.8 4,033,731 - +0.4 4,033,731 - +0.6 4,033,852 + +0.0
Or see this region's nucleotide sequence