Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2745 and Echvi_2746 are separated by 19 nucleotides Echvi_2746 and Echvi_2747 are separated by 225 nucleotides
Echvi_2745: Echvi_2745 - Beta-fructosidases (levanase/invertase), at 3,265,402 to 3,266,388
_2745
Echvi_2746: Echvi_2746 - Beta-xylosidase, at 3,266,408 to 3,267,988
_2746
Echvi_2747: Echvi_2747 - Beta-xylosidase, at 3,268,214 to 3,269,227
_2747
Position (kb)
3266
3267
3268 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3265.445 kb on + strand at 3265.448 kb on - strand at 3265.458 kb on + strand at 3265.466 kb on + strand at 3265.469 kb on + strand at 3265.501 kb on - strand, within Echvi_2745 at 3265.568 kb on - strand, within Echvi_2745 at 3265.614 kb on - strand, within Echvi_2745 at 3265.651 kb on + strand, within Echvi_2745 at 3265.652 kb on - strand, within Echvi_2745 at 3265.652 kb on - strand, within Echvi_2745 at 3265.652 kb on - strand, within Echvi_2745 at 3265.655 kb on + strand, within Echvi_2745 at 3265.728 kb on + strand, within Echvi_2745 at 3265.789 kb on + strand, within Echvi_2745 at 3265.789 kb on + strand, within Echvi_2745 at 3265.790 kb on - strand, within Echvi_2745 at 3265.816 kb on - strand, within Echvi_2745 at 3265.821 kb on + strand, within Echvi_2745 at 3265.878 kb on - strand, within Echvi_2745 at 3265.983 kb on + strand, within Echvi_2745 at 3266.105 kb on - strand, within Echvi_2745 at 3266.105 kb on - strand, within Echvi_2745 at 3266.114 kb on - strand, within Echvi_2745 at 3266.114 kb on - strand, within Echvi_2745 at 3266.126 kb on - strand, within Echvi_2745 at 3266.130 kb on + strand, within Echvi_2745 at 3266.131 kb on - strand, within Echvi_2745 at 3266.154 kb on - strand, within Echvi_2745 at 3266.189 kb on + strand, within Echvi_2745 at 3266.299 kb on + strand at 3266.299 kb on + strand at 3266.399 kb on + strand at 3266.449 kb on - strand at 3266.524 kb on - strand at 3266.527 kb on + strand at 3266.569 kb on - strand, within Echvi_2746 at 3266.582 kb on + strand, within Echvi_2746 at 3266.582 kb on + strand, within Echvi_2746 at 3266.582 kb on + strand, within Echvi_2746 at 3266.585 kb on + strand, within Echvi_2746 at 3266.586 kb on - strand, within Echvi_2746 at 3266.586 kb on - strand, within Echvi_2746 at 3266.586 kb on - strand, within Echvi_2746 at 3266.623 kb on - strand, within Echvi_2746 at 3266.636 kb on - strand, within Echvi_2746 at 3266.672 kb on + strand, within Echvi_2746 at 3266.673 kb on - strand, within Echvi_2746 at 3266.711 kb on - strand, within Echvi_2746 at 3266.736 kb on - strand, within Echvi_2746 at 3266.759 kb on + strand, within Echvi_2746 at 3266.765 kb on + strand, within Echvi_2746 at 3266.765 kb on + strand, within Echvi_2746 at 3266.766 kb on - strand, within Echvi_2746 at 3266.770 kb on + strand, within Echvi_2746 at 3266.770 kb on + strand, within Echvi_2746 at 3266.771 kb on - strand, within Echvi_2746 at 3266.882 kb on - strand, within Echvi_2746 at 3266.882 kb on - strand, within Echvi_2746 at 3266.882 kb on - strand, within Echvi_2746 at 3267.027 kb on + strand, within Echvi_2746 at 3267.102 kb on - strand, within Echvi_2746 at 3267.111 kb on - strand, within Echvi_2746 at 3267.142 kb on + strand, within Echvi_2746 at 3267.143 kb on - strand, within Echvi_2746 at 3267.143 kb on - strand, within Echvi_2746 at 3267.143 kb on - strand, within Echvi_2746 at 3267.147 kb on - strand, within Echvi_2746 at 3267.148 kb on + strand, within Echvi_2746 at 3267.149 kb on - strand, within Echvi_2746 at 3267.281 kb on + strand, within Echvi_2746 at 3267.281 kb on + strand, within Echvi_2746 at 3267.281 kb on + strand, within Echvi_2746 at 3267.282 kb on - strand, within Echvi_2746 at 3267.282 kb on - strand, within Echvi_2746 at 3267.282 kb on - strand, within Echvi_2746 at 3267.291 kb on - strand, within Echvi_2746 at 3267.300 kb on - strand, within Echvi_2746 at 3267.321 kb on - strand, within Echvi_2746 at 3267.325 kb on - strand, within Echvi_2746 at 3267.398 kb on + strand, within Echvi_2746 at 3267.398 kb on + strand, within Echvi_2746 at 3267.399 kb on - strand, within Echvi_2746 at 3267.399 kb on - strand, within Echvi_2746 at 3267.616 kb on + strand, within Echvi_2746 at 3267.617 kb on - strand, within Echvi_2746 at 3267.819 kb on + strand, within Echvi_2746 at 3267.820 kb on - strand, within Echvi_2746 at 3267.820 kb on - strand, within Echvi_2746 at 3267.820 kb on - strand, within Echvi_2746 at 3267.829 kb on + strand, within Echvi_2746 at 3267.830 kb on - strand, within Echvi_2746 at 3267.835 kb on + strand at 3267.864 kb on + strand at 3267.864 kb on + strand at 3267.986 kb on + strand at 3267.986 kb on + strand at 3267.986 kb on + strand at 3267.986 kb on + strand at 3267.989 kb on + strand at 3267.990 kb on - strand at 3267.990 kb on - strand at 3268.011 kb on - strand at 3268.029 kb on + strand at 3268.079 kb on - strand at 3268.089 kb on - strand at 3268.177 kb on - strand at 3268.179 kb on - strand at 3268.181 kb on + strand at 3268.209 kb on + strand at 3268.230 kb on + strand at 3268.233 kb on + strand at 3268.375 kb on + strand, within Echvi_2747 at 3268.375 kb on + strand, within Echvi_2747 at 3268.379 kb on + strand, within Echvi_2747 at 3268.380 kb on - strand, within Echvi_2747 at 3268.387 kb on + strand, within Echvi_2747 at 3268.387 kb on + strand, within Echvi_2747 at 3268.388 kb on - strand, within Echvi_2747 at 3268.421 kb on + strand, within Echvi_2747 at 3268.421 kb on + strand, within Echvi_2747 at 3268.490 kb on - strand, within Echvi_2747 at 3268.501 kb on + strand, within Echvi_2747 at 3268.502 kb on - strand, within Echvi_2747 at 3268.565 kb on + strand, within Echvi_2747 at 3268.565 kb on + strand, within Echvi_2747 at 3268.566 kb on - strand, within Echvi_2747 at 3268.568 kb on + strand, within Echvi_2747 at 3268.569 kb on - strand, within Echvi_2747 at 3268.569 kb on - strand, within Echvi_2747 at 3268.593 kb on + strand, within Echvi_2747 at 3268.594 kb on - strand, within Echvi_2747 at 3268.754 kb on + strand, within Echvi_2747 at 3268.754 kb on + strand, within Echvi_2747 at 3268.754 kb on + strand, within Echvi_2747 at 3268.755 kb on - strand, within Echvi_2747 at 3268.755 kb on - strand, within Echvi_2747 at 3268.757 kb on + strand, within Echvi_2747 at 3268.757 kb on + strand, within Echvi_2747 at 3268.757 kb on + strand, within Echvi_2747 at 3268.757 kb on + strand, within Echvi_2747 at 3268.758 kb on - strand, within Echvi_2747 at 3268.777 kb on + strand, within Echvi_2747 at 3268.778 kb on - strand, within Echvi_2747 at 3268.778 kb on - strand, within Echvi_2747 at 3268.778 kb on - strand, within Echvi_2747 at 3268.778 kb on - strand, within Echvi_2747 at 3268.792 kb on - strand, within Echvi_2747 at 3268.792 kb on - strand, within Echvi_2747 at 3268.839 kb on - strand, within Echvi_2747 at 3268.863 kb on - strand, within Echvi_2747 at 3268.885 kb on + strand, within Echvi_2747 at 3268.889 kb on - strand, within Echvi_2747 at 3268.897 kb on + strand, within Echvi_2747 at 3268.905 kb on - strand, within Echvi_2747 at 3268.943 kb on + strand, within Echvi_2747 at 3268.956 kb on - strand, within Echvi_2747
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 3,265,445 + -0.2 3,265,448 - +0.6 3,265,458 + +0.2 3,265,466 + +1.1 3,265,469 + -2.0 3,265,501 - Echvi_2745 0.10 +0.1 3,265,568 - Echvi_2745 0.17 -1.0 3,265,614 - Echvi_2745 0.21 -0.4 3,265,651 + Echvi_2745 0.25 +0.8 3,265,652 - Echvi_2745 0.25 +0.7 3,265,652 - Echvi_2745 0.25 -1.7 3,265,652 - Echvi_2745 0.25 +0.4 3,265,655 + Echvi_2745 0.26 -0.7 3,265,728 + Echvi_2745 0.33 +0.2 3,265,789 + Echvi_2745 0.39 -1.3 3,265,789 + Echvi_2745 0.39 -0.4 3,265,790 - Echvi_2745 0.39 -0.4 3,265,816 - Echvi_2745 0.42 -0.5 3,265,821 + Echvi_2745 0.42 -0.4 3,265,878 - Echvi_2745 0.48 -2.2 3,265,983 + Echvi_2745 0.59 -0.6 3,266,105 - Echvi_2745 0.71 +0.1 3,266,105 - Echvi_2745 0.71 +0.8 3,266,114 - Echvi_2745 0.72 -0.4 3,266,114 - Echvi_2745 0.72 +0.6 3,266,126 - Echvi_2745 0.73 -0.7 3,266,130 + Echvi_2745 0.74 -0.4 3,266,131 - Echvi_2745 0.74 +1.5 3,266,154 - Echvi_2745 0.76 +0.3 3,266,189 + Echvi_2745 0.80 +0.4 3,266,299 + -1.3 3,266,299 + +0.7 3,266,399 + +0.6 3,266,449 - -0.7 3,266,524 - -1.2 3,266,527 + -1.2 3,266,569 - Echvi_2746 0.10 -0.7 3,266,582 + Echvi_2746 0.11 -2.2 3,266,582 + Echvi_2746 0.11 -0.2 3,266,582 + Echvi_2746 0.11 -1.7 3,266,585 + Echvi_2746 0.11 +1.0 3,266,586 - Echvi_2746 0.11 +0.8 3,266,586 - Echvi_2746 0.11 -2.0 3,266,586 - Echvi_2746 0.11 -1.0 3,266,623 - Echvi_2746 0.14 -0.3 3,266,636 - Echvi_2746 0.14 +2.6 3,266,672 + Echvi_2746 0.17 +0.2 3,266,673 - Echvi_2746 0.17 -0.4 3,266,711 - Echvi_2746 0.19 -0.1 3,266,736 - Echvi_2746 0.21 +0.3 3,266,759 + Echvi_2746 0.22 -0.0 3,266,765 + Echvi_2746 0.23 -0.0 3,266,765 + Echvi_2746 0.23 -0.8 3,266,766 - Echvi_2746 0.23 +0.6 3,266,770 + Echvi_2746 0.23 -1.4 3,266,770 + Echvi_2746 0.23 -0.9 3,266,771 - Echvi_2746 0.23 -0.7 3,266,882 - Echvi_2746 0.30 -0.5 3,266,882 - Echvi_2746 0.30 -1.9 3,266,882 - Echvi_2746 0.30 -0.4 3,267,027 + Echvi_2746 0.39 +0.2 3,267,102 - Echvi_2746 0.44 +0.6 3,267,111 - Echvi_2746 0.44 -1.3 3,267,142 + Echvi_2746 0.46 +1.8 3,267,143 - Echvi_2746 0.46 -0.0 3,267,143 - Echvi_2746 0.46 -0.0 3,267,143 - Echvi_2746 0.46 +0.7 3,267,147 - Echvi_2746 0.47 -0.3 3,267,148 + Echvi_2746 0.47 -0.0 3,267,149 - Echvi_2746 0.47 -1.2 3,267,281 + Echvi_2746 0.55 -0.3 3,267,281 + Echvi_2746 0.55 +0.3 3,267,281 + Echvi_2746 0.55 -0.9 3,267,282 - Echvi_2746 0.55 -0.2 3,267,282 - Echvi_2746 0.55 +0.1 3,267,282 - Echvi_2746 0.55 -0.1 3,267,291 - Echvi_2746 0.56 -1.4 3,267,300 - Echvi_2746 0.56 -1.3 3,267,321 - Echvi_2746 0.58 -1.2 3,267,325 - Echvi_2746 0.58 -0.9 3,267,398 + Echvi_2746 0.63 +0.6 3,267,398 + Echvi_2746 0.63 -2.5 3,267,399 - Echvi_2746 0.63 -1.0 3,267,399 - Echvi_2746 0.63 +0.1 3,267,616 + Echvi_2746 0.76 +1.0 3,267,617 - Echvi_2746 0.76 +0.7 3,267,819 + Echvi_2746 0.89 -0.7 3,267,820 - Echvi_2746 0.89 -0.1 3,267,820 - Echvi_2746 0.89 +0.1 3,267,820 - Echvi_2746 0.89 -0.8 3,267,829 + Echvi_2746 0.90 -1.6 3,267,830 - Echvi_2746 0.90 -1.0 3,267,835 + -0.7 3,267,864 + +0.5 3,267,864 + -0.7 3,267,986 + -1.1 3,267,986 + -0.5 3,267,986 + +0.3 3,267,986 + +2.8 3,267,989 + -1.6 3,267,990 - +0.2 3,267,990 - +0.1 3,268,011 - +1.8 3,268,029 + -0.9 3,268,079 - +1.2 3,268,089 - +0.4 3,268,177 - -0.2 3,268,179 - +0.4 3,268,181 + +1.0 3,268,209 + +0.9 3,268,230 + -1.0 3,268,233 + +3.9 3,268,375 + Echvi_2747 0.16 -0.7 3,268,375 + Echvi_2747 0.16 +0.7 3,268,379 + Echvi_2747 0.16 -0.6 3,268,380 - Echvi_2747 0.16 -0.3 3,268,387 + Echvi_2747 0.17 -0.1 3,268,387 + Echvi_2747 0.17 -0.9 3,268,388 - Echvi_2747 0.17 -1.2 3,268,421 + Echvi_2747 0.20 -0.0 3,268,421 + Echvi_2747 0.20 -1.2 3,268,490 - Echvi_2747 0.27 +0.3 3,268,501 + Echvi_2747 0.28 +0.9 3,268,502 - Echvi_2747 0.28 +0.1 3,268,565 + Echvi_2747 0.35 -0.6 3,268,565 + Echvi_2747 0.35 +1.0 3,268,566 - Echvi_2747 0.35 -0.1 3,268,568 + Echvi_2747 0.35 -1.2 3,268,569 - Echvi_2747 0.35 +1.7 3,268,569 - Echvi_2747 0.35 -0.4 3,268,593 + Echvi_2747 0.37 -0.1 3,268,594 - Echvi_2747 0.37 -0.0 3,268,754 + Echvi_2747 0.53 +0.5 3,268,754 + Echvi_2747 0.53 -0.1 3,268,754 + Echvi_2747 0.53 -0.7 3,268,755 - Echvi_2747 0.53 -0.7 3,268,755 - Echvi_2747 0.53 -0.9 3,268,757 + Echvi_2747 0.54 +0.6 3,268,757 + Echvi_2747 0.54 -0.2 3,268,757 + Echvi_2747 0.54 -1.2 3,268,757 + Echvi_2747 0.54 -0.3 3,268,758 - Echvi_2747 0.54 -0.0 3,268,777 + Echvi_2747 0.56 -0.1 3,268,778 - Echvi_2747 0.56 -0.0 3,268,778 - Echvi_2747 0.56 -0.5 3,268,778 - Echvi_2747 0.56 +0.3 3,268,778 - Echvi_2747 0.56 +0.3 3,268,792 - Echvi_2747 0.57 +2.1 3,268,792 - Echvi_2747 0.57 +0.4 3,268,839 - Echvi_2747 0.62 +0.6 3,268,863 - Echvi_2747 0.64 -0.7 3,268,885 + Echvi_2747 0.66 +0.7 3,268,889 - Echvi_2747 0.67 +0.2 3,268,897 + Echvi_2747 0.67 -0.5 3,268,905 - Echvi_2747 0.68 -0.9 3,268,943 + Echvi_2747 0.72 -0.1 3,268,956 - Echvi_2747 0.73 +0.7
Or see this region's nucleotide sequence