Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1928 and Echvi_1929 overlap by 14 nucleotides Echvi_1929 and Echvi_1930 are separated by 83 nucleotides Echvi_1930 and Echvi_1931 are separated by 338 nucleotides
Echvi_1928: Echvi_1928 - Site-specific recombinases, DNA invertase Pin homologs, at 2,270,826 to 2,272,391
_1928
Echvi_1929: Echvi_1929 - hypothetical protein, at 2,272,378 to 2,272,560
_1929
Echvi_1930: Echvi_1930 - DNA repair proteins, at 2,272,644 to 2,273,105
_1930
Echvi_1931: Echvi_1931 - phage/plasmid-related protein TIGR03299, at 2,273,444 to 2,274,508
_1931
Position (kb)
2272
2273 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.406 kb on - strand, within Echvi_1928 at 2271.407 kb on + strand, within Echvi_1928 at 2271.408 kb on - strand, within Echvi_1928 at 2271.408 kb on - strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.440 kb on - strand, within Echvi_1928 at 2271.464 kb on - strand, within Echvi_1928 at 2271.466 kb on + strand, within Echvi_1928 at 2271.470 kb on - strand, within Echvi_1928 at 2271.472 kb on + strand, within Echvi_1928 at 2271.583 kb on + strand, within Echvi_1928 at 2271.612 kb on - strand, within Echvi_1928 at 2271.689 kb on + strand, within Echvi_1928 at 2271.809 kb on - strand, within Echvi_1928 at 2271.899 kb on + strand, within Echvi_1928 at 2271.905 kb on + strand, within Echvi_1928 at 2271.905 kb on + strand, within Echvi_1928 at 2271.964 kb on + strand, within Echvi_1928 at 2271.965 kb on - strand, within Echvi_1928 at 2272.016 kb on - strand, within Echvi_1928 at 2272.083 kb on + strand, within Echvi_1928 at 2272.084 kb on - strand, within Echvi_1928 at 2272.085 kb on + strand, within Echvi_1928 at 2272.170 kb on - strand, within Echvi_1928 at 2272.273 kb on - strand at 2272.333 kb on + strand at 2272.334 kb on - strand at 2272.358 kb on + strand at 2272.358 kb on + strand at 2272.362 kb on + strand at 2272.362 kb on + strand at 2272.372 kb on + strand at 2272.372 kb on + strand at 2272.383 kb on + strand at 2272.383 kb on + strand at 2272.384 kb on - strand at 2272.384 kb on - strand at 2272.384 kb on - strand at 2272.397 kb on - strand, within Echvi_1929 at 2272.418 kb on - strand, within Echvi_1929 at 2272.492 kb on + strand, within Echvi_1929 at 2272.496 kb on - strand, within Echvi_1929 at 2272.504 kb on + strand, within Echvi_1929 at 2272.504 kb on + strand, within Echvi_1929 at 2272.518 kb on + strand, within Echvi_1929 at 2272.556 kb on + strand at 2272.556 kb on + strand at 2272.556 kb on + strand at 2272.560 kb on + strand at 2272.615 kb on + strand at 2272.616 kb on - strand at 2272.616 kb on - strand at 2272.619 kb on - strand at 2272.715 kb on + strand, within Echvi_1930 at 2272.990 kb on - strand, within Echvi_1930 at 2272.993 kb on - strand, within Echvi_1930 at 2272.993 kb on - strand, within Echvi_1930 at 2273.049 kb on - strand, within Echvi_1930 at 2273.218 kb on - strand at 2273.225 kb on - strand at 2273.270 kb on + strand at 2273.270 kb on + strand at 2273.302 kb on + strand at 2273.325 kb on + strand at 2273.491 kb on + strand at 2273.509 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 2,271,405 + Echvi_1928 0.37 -0.7 2,271,405 + Echvi_1928 0.37 -0.7 2,271,405 + Echvi_1928 0.37 -0.3 2,271,405 + Echvi_1928 0.37 +0.5 2,271,406 - Echvi_1928 0.37 -0.7 2,271,407 + Echvi_1928 0.37 -0.0 2,271,408 - Echvi_1928 0.37 -0.9 2,271,408 - Echvi_1928 0.37 +0.6 2,271,409 + Echvi_1928 0.37 -0.6 2,271,409 + Echvi_1928 0.37 -0.2 2,271,409 + Echvi_1928 0.37 +0.4 2,271,440 - Echvi_1928 0.39 +0.8 2,271,464 - Echvi_1928 0.41 +1.0 2,271,466 + Echvi_1928 0.41 +0.2 2,271,470 - Echvi_1928 0.41 +0.4 2,271,472 + Echvi_1928 0.41 +0.6 2,271,583 + Echvi_1928 0.48 -0.7 2,271,612 - Echvi_1928 0.50 -0.2 2,271,689 + Echvi_1928 0.55 -0.1 2,271,809 - Echvi_1928 0.63 -0.1 2,271,899 + Echvi_1928 0.69 +0.4 2,271,905 + Echvi_1928 0.69 +0.6 2,271,905 + Echvi_1928 0.69 +1.3 2,271,964 + Echvi_1928 0.73 -0.1 2,271,965 - Echvi_1928 0.73 -0.5 2,272,016 - Echvi_1928 0.76 +0.2 2,272,083 + Echvi_1928 0.80 -0.1 2,272,084 - Echvi_1928 0.80 +0.7 2,272,085 + Echvi_1928 0.80 -0.5 2,272,170 - Echvi_1928 0.86 +0.5 2,272,273 - +0.4 2,272,333 + -0.0 2,272,334 - +0.5 2,272,358 + -0.7 2,272,358 + -0.9 2,272,362 + -2.2 2,272,362 + -1.3 2,272,372 + -3.2 2,272,372 + +0.2 2,272,383 + -0.3 2,272,383 + -1.6 2,272,384 - -0.1 2,272,384 - -0.9 2,272,384 - +1.4 2,272,397 - Echvi_1929 0.10 -2.5 2,272,418 - Echvi_1929 0.22 -0.3 2,272,492 + Echvi_1929 0.62 +1.2 2,272,496 - Echvi_1929 0.64 -0.8 2,272,504 + Echvi_1929 0.69 -2.9 2,272,504 + Echvi_1929 0.69 -1.5 2,272,518 + Echvi_1929 0.77 -0.8 2,272,556 + -0.6 2,272,556 + -0.9 2,272,556 + -0.5 2,272,560 + +0.8 2,272,615 + +0.7 2,272,616 - -0.4 2,272,616 - -1.1 2,272,619 - -0.7 2,272,715 + Echvi_1930 0.15 +0.7 2,272,990 - Echvi_1930 0.75 +1.7 2,272,993 - Echvi_1930 0.76 +0.0 2,272,993 - Echvi_1930 0.76 +0.3 2,273,049 - Echvi_1930 0.88 +0.2 2,273,218 - +1.2 2,273,225 - -1.6 2,273,270 + -0.6 2,273,270 + -0.8 2,273,302 + +0.2 2,273,325 + -0.1 2,273,491 + -0.6 2,273,509 + -0.7
Or see this region's nucleotide sequence