Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1258 and Echvi_1259 are separated by 23 nucleotides Echvi_1259 and Echvi_1260 are separated by 119 nucleotides Echvi_1260 and Echvi_1261 are separated by 161 nucleotides
Echvi_1258: Echvi_1258 - Peptide methionine sulfoxide reductase, at 1,444,070 to 1,444,555
_1258
Echvi_1259: Echvi_1259 - methionine-R-sulfoxide reductase, at 1,444,579 to 1,445,022
_1259
Echvi_1260: Echvi_1260 - hypothetical protein, at 1,445,142 to 1,445,942
_1260
Echvi_1261: Echvi_1261 - Glycosyltransferase, at 1,446,104 to 1,447,291
_1261
Position (kb)
1445
1446 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1444.170 kb on + strand, within Echvi_1258 at 1444.171 kb on - strand, within Echvi_1258 at 1444.253 kb on + strand, within Echvi_1258 at 1444.253 kb on + strand, within Echvi_1258 at 1444.295 kb on - strand, within Echvi_1258 at 1444.305 kb on + strand, within Echvi_1258 at 1444.336 kb on + strand, within Echvi_1258 at 1444.364 kb on + strand, within Echvi_1258 at 1444.364 kb on + strand, within Echvi_1258 at 1444.365 kb on - strand, within Echvi_1258 at 1444.410 kb on + strand, within Echvi_1258 at 1444.410 kb on + strand, within Echvi_1258 at 1444.410 kb on + strand, within Echvi_1258 at 1444.411 kb on - strand, within Echvi_1258 at 1444.421 kb on + strand, within Echvi_1258 at 1444.421 kb on + strand, within Echvi_1258 at 1444.421 kb on + strand, within Echvi_1258 at 1444.422 kb on - strand, within Echvi_1258 at 1444.453 kb on + strand, within Echvi_1258 at 1444.516 kb on + strand at 1444.517 kb on - strand at 1444.561 kb on + strand at 1444.562 kb on - strand at 1444.562 kb on - strand at 1444.562 kb on - strand at 1444.580 kb on + strand at 1444.581 kb on - strand at 1444.616 kb on + strand at 1444.748 kb on - strand, within Echvi_1259 at 1444.924 kb on + strand, within Echvi_1259 at 1444.927 kb on + strand, within Echvi_1259 at 1444.927 kb on + strand, within Echvi_1259 at 1444.928 kb on - strand, within Echvi_1259 at 1445.036 kb on + strand at 1445.041 kb on - strand at 1445.055 kb on - strand at 1445.055 kb on - strand at 1445.104 kb on + strand at 1445.104 kb on + strand at 1445.105 kb on - strand at 1445.116 kb on + strand at 1445.167 kb on - strand at 1445.167 kb on - strand at 1445.264 kb on + strand, within Echvi_1260 at 1445.265 kb on - strand, within Echvi_1260 at 1445.273 kb on + strand, within Echvi_1260 at 1445.375 kb on + strand, within Echvi_1260 at 1445.375 kb on + strand, within Echvi_1260 at 1445.375 kb on + strand, within Echvi_1260 at 1445.388 kb on + strand, within Echvi_1260 at 1445.389 kb on - strand, within Echvi_1260 at 1445.389 kb on - strand, within Echvi_1260 at 1445.392 kb on + strand, within Echvi_1260 at 1445.392 kb on + strand, within Echvi_1260 at 1445.442 kb on - strand, within Echvi_1260 at 1445.627 kb on - strand, within Echvi_1260 at 1445.630 kb on + strand, within Echvi_1260 at 1445.630 kb on + strand, within Echvi_1260 at 1445.631 kb on - strand, within Echvi_1260 at 1445.631 kb on - strand, within Echvi_1260 at 1445.632 kb on + strand, within Echvi_1260 at 1445.633 kb on - strand, within Echvi_1260 at 1445.633 kb on - strand, within Echvi_1260 at 1445.730 kb on - strand, within Echvi_1260 at 1445.803 kb on + strand, within Echvi_1260 at 1445.804 kb on - strand, within Echvi_1260 at 1445.889 kb on - strand at 1445.894 kb on + strand at 1445.922 kb on + strand at 1445.923 kb on - strand at 1445.923 kb on - strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.924 kb on + strand at 1445.925 kb on - strand at 1445.925 kb on - strand at 1445.925 kb on - strand at 1445.925 kb on - strand at 1445.925 kb on - strand at 1445.925 kb on - strand at 1445.927 kb on - strand at 1445.927 kb on - strand at 1445.928 kb on + strand at 1445.929 kb on - strand at 1445.929 kb on - strand at 1445.972 kb on + strand at 1445.976 kb on - strand at 1445.998 kb on + strand at 1445.998 kb on + strand at 1445.999 kb on - strand at 1445.999 kb on - strand at 1446.034 kb on + strand at 1446.041 kb on + strand at 1446.042 kb on - strand at 1446.047 kb on - strand at 1446.047 kb on - strand at 1446.262 kb on + strand, within Echvi_1261 at 1446.262 kb on + strand, within Echvi_1261 at 1446.263 kb on - strand, within Echvi_1261 at 1446.263 kb on - strand, within Echvi_1261 at 1446.263 kb on - strand, within Echvi_1261 at 1446.274 kb on - strand, within Echvi_1261 at 1446.320 kb on - strand, within Echvi_1261 at 1446.334 kb on + strand, within Echvi_1261 at 1446.335 kb on - strand, within Echvi_1261 at 1446.442 kb on + strand, within Echvi_1261 at 1446.442 kb on + strand, within Echvi_1261 at 1446.442 kb on + strand, within Echvi_1261 at 1446.443 kb on - strand, within Echvi_1261 at 1446.443 kb on - strand, within Echvi_1261 at 1446.473 kb on - strand, within Echvi_1261 at 1446.515 kb on + strand, within Echvi_1261 at 1446.627 kb on - strand, within Echvi_1261 at 1446.640 kb on - strand, within Echvi_1261 at 1446.694 kb on + strand, within Echvi_1261 at 1446.694 kb on + strand, within Echvi_1261 at 1446.694 kb on + strand, within Echvi_1261 at 1446.695 kb on - strand, within Echvi_1261 at 1446.778 kb on + strand, within Echvi_1261 at 1446.778 kb on + strand, within Echvi_1261 at 1446.778 kb on + strand, within Echvi_1261 at 1446.778 kb on + strand, within Echvi_1261 at 1446.779 kb on - strand, within Echvi_1261 at 1446.779 kb on - strand, within Echvi_1261 at 1446.779 kb on - strand, within Echvi_1261 at 1446.780 kb on + strand, within Echvi_1261 at 1446.828 kb on + strand, within Echvi_1261 at 1446.828 kb on + strand, within Echvi_1261 at 1446.828 kb on + strand, within Echvi_1261 at 1446.828 kb on + strand, within Echvi_1261 at 1446.829 kb on - strand, within Echvi_1261 at 1446.850 kb on - strand, within Echvi_1261 at 1446.850 kb on - strand, within Echvi_1261 at 1446.938 kb on + strand, within Echvi_1261 at 1446.938 kb on + strand, within Echvi_1261 at 1446.939 kb on - strand, within Echvi_1261 at 1446.939 kb on - strand, within Echvi_1261
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 1,444,170 + Echvi_1258 0.21 +1.1 1,444,171 - Echvi_1258 0.21 +0.6 1,444,253 + Echvi_1258 0.38 +0.4 1,444,253 + Echvi_1258 0.38 +0.8 1,444,295 - Echvi_1258 0.46 -1.5 1,444,305 + Echvi_1258 0.48 -0.2 1,444,336 + Echvi_1258 0.55 -0.6 1,444,364 + Echvi_1258 0.60 +0.0 1,444,364 + Echvi_1258 0.60 +1.3 1,444,365 - Echvi_1258 0.61 -1.6 1,444,410 + Echvi_1258 0.70 +0.5 1,444,410 + Echvi_1258 0.70 -0.7 1,444,410 + Echvi_1258 0.70 +0.8 1,444,411 - Echvi_1258 0.70 -1.3 1,444,421 + Echvi_1258 0.72 -0.5 1,444,421 + Echvi_1258 0.72 +1.1 1,444,421 + Echvi_1258 0.72 +1.1 1,444,422 - Echvi_1258 0.72 -1.1 1,444,453 + Echvi_1258 0.79 +0.6 1,444,516 + +0.1 1,444,517 - -1.0 1,444,561 + +0.3 1,444,562 - -1.5 1,444,562 - -1.4 1,444,562 - -0.9 1,444,580 + -0.1 1,444,581 - -0.2 1,444,616 + +1.3 1,444,748 - Echvi_1259 0.38 -1.3 1,444,924 + Echvi_1259 0.78 -1.3 1,444,927 + Echvi_1259 0.78 -0.2 1,444,927 + Echvi_1259 0.78 +0.3 1,444,928 - Echvi_1259 0.79 -1.9 1,445,036 + +0.7 1,445,041 - -0.8 1,445,055 - +0.8 1,445,055 - -1.3 1,445,104 + -0.7 1,445,104 + -0.7 1,445,105 - -0.6 1,445,116 + +0.1 1,445,167 - -2.5 1,445,167 - -0.7 1,445,264 + Echvi_1260 0.15 -0.4 1,445,265 - Echvi_1260 0.15 -0.2 1,445,273 + Echvi_1260 0.16 -0.8 1,445,375 + Echvi_1260 0.29 -0.1 1,445,375 + Echvi_1260 0.29 +0.5 1,445,375 + Echvi_1260 0.29 -0.2 1,445,388 + Echvi_1260 0.31 -0.3 1,445,389 - Echvi_1260 0.31 -3.2 1,445,389 - Echvi_1260 0.31 +0.1 1,445,392 + Echvi_1260 0.31 -0.1 1,445,392 + Echvi_1260 0.31 +0.0 1,445,442 - Echvi_1260 0.37 -0.9 1,445,627 - Echvi_1260 0.61 -0.3 1,445,630 + Echvi_1260 0.61 -0.2 1,445,630 + Echvi_1260 0.61 +0.3 1,445,631 - Echvi_1260 0.61 -2.0 1,445,631 - Echvi_1260 0.61 -1.2 1,445,632 + Echvi_1260 0.61 -0.1 1,445,633 - Echvi_1260 0.61 -2.6 1,445,633 - Echvi_1260 0.61 -1.0 1,445,730 - Echvi_1260 0.73 -2.4 1,445,803 + Echvi_1260 0.83 -1.2 1,445,804 - Echvi_1260 0.83 -1.1 1,445,889 - -1.0 1,445,894 + -1.1 1,445,922 + -0.4 1,445,923 - -1.9 1,445,923 - +0.0 1,445,924 + +0.0 1,445,924 + -1.0 1,445,924 + +0.1 1,445,924 + +0.4 1,445,924 + -0.3 1,445,924 + -0.5 1,445,924 + +0.0 1,445,924 + +0.6 1,445,925 - -1.6 1,445,925 - -1.9 1,445,925 - -1.5 1,445,925 - -1.1 1,445,925 - +0.8 1,445,925 - -0.6 1,445,927 - -0.3 1,445,927 - -1.4 1,445,928 + -0.4 1,445,929 - +0.1 1,445,929 - -2.1 1,445,972 + +0.1 1,445,976 - -1.4 1,445,998 + +0.3 1,445,998 + -2.4 1,445,999 - -0.3 1,445,999 - -1.2 1,446,034 + -0.7 1,446,041 + +0.4 1,446,042 - -1.2 1,446,047 - -0.4 1,446,047 - -0.5 1,446,262 + Echvi_1261 0.13 -1.1 1,446,262 + Echvi_1261 0.13 -0.3 1,446,263 - Echvi_1261 0.13 +0.8 1,446,263 - Echvi_1261 0.13 -2.5 1,446,263 - Echvi_1261 0.13 +0.3 1,446,274 - Echvi_1261 0.14 +0.2 1,446,320 - Echvi_1261 0.18 +0.3 1,446,334 + Echvi_1261 0.19 -0.6 1,446,335 - Echvi_1261 0.19 -1.2 1,446,442 + Echvi_1261 0.28 -0.1 1,446,442 + Echvi_1261 0.28 +0.6 1,446,442 + Echvi_1261 0.28 -0.5 1,446,443 - Echvi_1261 0.29 +0.3 1,446,443 - Echvi_1261 0.29 -1.0 1,446,473 - Echvi_1261 0.31 -1.3 1,446,515 + Echvi_1261 0.35 -0.7 1,446,627 - Echvi_1261 0.44 +0.0 1,446,640 - Echvi_1261 0.45 -0.9 1,446,694 + Echvi_1261 0.50 -0.3 1,446,694 + Echvi_1261 0.50 +1.3 1,446,694 + Echvi_1261 0.50 +0.2 1,446,695 - Echvi_1261 0.50 -0.4 1,446,778 + Echvi_1261 0.57 +0.1 1,446,778 + Echvi_1261 0.57 +0.5 1,446,778 + Echvi_1261 0.57 +0.3 1,446,778 + Echvi_1261 0.57 -0.7 1,446,779 - Echvi_1261 0.57 -0.2 1,446,779 - Echvi_1261 0.57 +0.3 1,446,779 - Echvi_1261 0.57 -0.7 1,446,780 + Echvi_1261 0.57 -0.6 1,446,828 + Echvi_1261 0.61 +0.1 1,446,828 + Echvi_1261 0.61 -0.6 1,446,828 + Echvi_1261 0.61 -0.0 1,446,828 + Echvi_1261 0.61 +0.4 1,446,829 - Echvi_1261 0.61 -1.0 1,446,850 - Echvi_1261 0.63 -0.1 1,446,850 - Echvi_1261 0.63 -1.4 1,446,938 + Echvi_1261 0.70 +1.3 1,446,938 + Echvi_1261 0.70 -1.0 1,446,939 - Echvi_1261 0.70 -0.4 1,446,939 - Echvi_1261 0.70 -0.6
Or see this region's nucleotide sequence