Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1254 and Echvi_1255 are separated by 143 nucleotides Echvi_1255 and Echvi_1256 overlap by 4 nucleotides Echvi_1256 and Echvi_1257 are separated by 473 nucleotides
Echvi_1254: Echvi_1254 - hypothetical protein, at 1,441,046 to 1,441,387
_1254
Echvi_1255: Echvi_1255 - Fatty acid hydroxylase superfamily., at 1,441,531 to 1,441,977
_1255
Echvi_1256: Echvi_1256 - Predicted transcriptional regulators, at 1,441,974 to 1,442,873
_1256
Echvi_1257: Echvi_1257 - Transcriptional regulator, at 1,443,347 to 1,443,997
_1257
Position (kb)
1441
1442
1443 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1441.001 kb on + strand at 1441.001 kb on + strand at 1441.002 kb on - strand at 1441.047 kb on + strand at 1441.048 kb on - strand at 1441.049 kb on + strand at 1441.050 kb on - strand at 1441.050 kb on - strand at 1441.050 kb on - strand at 1441.059 kb on - strand at 1441.076 kb on - strand at 1441.080 kb on + strand at 1441.141 kb on - strand, within Echvi_1254 at 1441.169 kb on - strand, within Echvi_1254 at 1441.173 kb on + strand, within Echvi_1254 at 1441.173 kb on + strand, within Echvi_1254 at 1441.173 kb on + strand, within Echvi_1254 at 1441.270 kb on + strand, within Echvi_1254 at 1441.271 kb on - strand, within Echvi_1254 at 1441.395 kb on - strand at 1441.405 kb on + strand at 1441.536 kb on - strand at 1441.536 kb on - strand at 1441.548 kb on - strand at 1441.600 kb on - strand, within Echvi_1255 at 1441.604 kb on - strand, within Echvi_1255 at 1441.635 kb on + strand, within Echvi_1255 at 1441.635 kb on + strand, within Echvi_1255 at 1441.635 kb on + strand, within Echvi_1255 at 1441.636 kb on - strand, within Echvi_1255 at 1441.715 kb on + strand, within Echvi_1255 at 1441.715 kb on + strand, within Echvi_1255 at 1441.715 kb on + strand, within Echvi_1255 at 1441.715 kb on + strand, within Echvi_1255 at 1441.716 kb on - strand, within Echvi_1255 at 1441.780 kb on + strand, within Echvi_1255 at 1441.917 kb on + strand, within Echvi_1255 at 1441.917 kb on + strand, within Echvi_1255 at 1441.983 kb on + strand at 1442.016 kb on - strand at 1442.027 kb on + strand at 1442.028 kb on - strand at 1442.028 kb on - strand at 1442.032 kb on + strand at 1442.094 kb on + strand, within Echvi_1256 at 1442.098 kb on - strand, within Echvi_1256 at 1442.225 kb on + strand, within Echvi_1256 at 1442.235 kb on + strand, within Echvi_1256 at 1442.235 kb on + strand, within Echvi_1256 at 1442.248 kb on + strand, within Echvi_1256 at 1442.249 kb on - strand, within Echvi_1256 at 1442.324 kb on + strand, within Echvi_1256 at 1442.326 kb on + strand, within Echvi_1256 at 1442.326 kb on + strand, within Echvi_1256 at 1442.327 kb on - strand, within Echvi_1256 at 1442.377 kb on + strand, within Echvi_1256 at 1442.395 kb on + strand, within Echvi_1256 at 1442.476 kb on + strand, within Echvi_1256 at 1442.476 kb on + strand, within Echvi_1256 at 1442.476 kb on + strand, within Echvi_1256 at 1442.476 kb on + strand, within Echvi_1256 at 1442.478 kb on + strand, within Echvi_1256 at 1442.478 kb on + strand, within Echvi_1256 at 1442.479 kb on - strand, within Echvi_1256 at 1442.556 kb on + strand, within Echvi_1256 at 1442.556 kb on + strand, within Echvi_1256 at 1442.557 kb on - strand, within Echvi_1256 at 1442.580 kb on - strand, within Echvi_1256 at 1442.589 kb on + strand, within Echvi_1256 at 1442.604 kb on - strand, within Echvi_1256 at 1442.604 kb on - strand, within Echvi_1256 at 1442.669 kb on + strand, within Echvi_1256 at 1442.669 kb on + strand, within Echvi_1256 at 1442.669 kb on + strand, within Echvi_1256 at 1442.669 kb on + strand, within Echvi_1256 at 1442.670 kb on - strand, within Echvi_1256 at 1442.670 kb on - strand, within Echvi_1256 at 1442.670 kb on - strand, within Echvi_1256 at 1442.673 kb on - strand, within Echvi_1256 at 1442.673 kb on - strand, within Echvi_1256 at 1442.704 kb on - strand, within Echvi_1256 at 1442.704 kb on - strand, within Echvi_1256 at 1442.748 kb on - strand, within Echvi_1256 at 1442.779 kb on + strand, within Echvi_1256 at 1442.779 kb on + strand, within Echvi_1256 at 1442.779 kb on + strand, within Echvi_1256 at 1442.780 kb on - strand, within Echvi_1256 at 1442.780 kb on - strand, within Echvi_1256 at 1442.790 kb on - strand at 1442.836 kb on + strand at 1442.836 kb on + strand at 1442.837 kb on - strand at 1443.000 kb on + strand at 1443.004 kb on + strand at 1443.004 kb on + strand at 1443.007 kb on + strand at 1443.039 kb on - strand at 1443.152 kb on - strand at 1443.197 kb on - strand at 1443.200 kb on + strand at 1443.246 kb on + strand at 1443.250 kb on + strand at 1443.251 kb on - strand at 1443.254 kb on - strand at 1443.257 kb on + strand at 1443.257 kb on + strand at 1443.258 kb on - strand at 1443.258 kb on - strand at 1443.258 kb on - strand at 1443.258 kb on - strand at 1443.258 kb on - strand at 1443.260 kb on + strand at 1443.260 kb on + strand at 1443.260 kb on + strand at 1443.261 kb on - strand at 1443.261 kb on - strand at 1443.299 kb on + strand at 1443.300 kb on - strand at 1443.303 kb on + strand at 1443.340 kb on - strand at 1443.400 kb on + strand at 1443.407 kb on + strand at 1443.408 kb on - strand at 1443.408 kb on - strand at 1443.427 kb on + strand, within Echvi_1257 at 1443.427 kb on + strand, within Echvi_1257 at 1443.427 kb on + strand, within Echvi_1257 at 1443.428 kb on - strand, within Echvi_1257 at 1443.430 kb on + strand, within Echvi_1257 at 1443.431 kb on - strand, within Echvi_1257 at 1443.431 kb on - strand, within Echvi_1257 at 1443.440 kb on - strand, within Echvi_1257 at 1443.440 kb on - strand, within Echvi_1257 at 1443.445 kb on + strand, within Echvi_1257 at 1443.445 kb on + strand, within Echvi_1257 at 1443.486 kb on - strand, within Echvi_1257 at 1443.494 kb on - strand, within Echvi_1257 at 1443.524 kb on + strand, within Echvi_1257 at 1443.524 kb on + strand, within Echvi_1257 at 1443.524 kb on + strand, within Echvi_1257 at 1443.525 kb on - strand, within Echvi_1257 at 1443.525 kb on - strand, within Echvi_1257 at 1443.525 kb on - strand, within Echvi_1257 at 1443.526 kb on + strand, within Echvi_1257 at 1443.558 kb on - strand, within Echvi_1257 at 1443.564 kb on + strand, within Echvi_1257 at 1443.564 kb on + strand, within Echvi_1257 at 1443.565 kb on - strand, within Echvi_1257 at 1443.565 kb on - strand, within Echvi_1257 at 1443.565 kb on - strand, within Echvi_1257 at 1443.639 kb on - strand, within Echvi_1257 at 1443.681 kb on - strand, within Echvi_1257 at 1443.690 kb on + strand, within Echvi_1257 at 1443.757 kb on + strand, within Echvi_1257 at 1443.794 kb on + strand, within Echvi_1257 at 1443.795 kb on - strand, within Echvi_1257 at 1443.795 kb on - strand, within Echvi_1257 at 1443.817 kb on + strand, within Echvi_1257 at 1443.817 kb on + strand, within Echvi_1257 at 1443.817 kb on + strand, within Echvi_1257 at 1443.817 kb on + strand, within Echvi_1257 at 1443.817 kb on + strand, within Echvi_1257 at 1443.818 kb on - strand, within Echvi_1257 at 1443.819 kb on + strand, within Echvi_1257 at 1443.823 kb on + strand, within Echvi_1257 at 1443.823 kb on + strand, within Echvi_1257 at 1443.824 kb on - strand, within Echvi_1257 at 1443.824 kb on - strand, within Echvi_1257 at 1443.832 kb on + strand, within Echvi_1257 at 1443.859 kb on - strand, within Echvi_1257
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 1,441,001 + -0.1 1,441,001 + -0.7 1,441,002 - +0.6 1,441,047 + +0.4 1,441,048 - -1.3 1,441,049 + -0.2 1,441,050 - +2.4 1,441,050 - -0.3 1,441,050 - +0.0 1,441,059 - -1.3 1,441,076 - -0.7 1,441,080 + +0.4 1,441,141 - Echvi_1254 0.28 +1.7 1,441,169 - Echvi_1254 0.36 -1.7 1,441,173 + Echvi_1254 0.37 +1.0 1,441,173 + Echvi_1254 0.37 -0.1 1,441,173 + Echvi_1254 0.37 +0.8 1,441,270 + Echvi_1254 0.65 +0.3 1,441,271 - Echvi_1254 0.66 -0.7 1,441,395 - -0.4 1,441,405 + -0.0 1,441,536 - +0.3 1,441,536 - -0.5 1,441,548 - -0.3 1,441,600 - Echvi_1255 0.15 -1.7 1,441,604 - Echvi_1255 0.16 +0.5 1,441,635 + Echvi_1255 0.23 -0.5 1,441,635 + Echvi_1255 0.23 +1.0 1,441,635 + Echvi_1255 0.23 +0.3 1,441,636 - Echvi_1255 0.23 -2.2 1,441,715 + Echvi_1255 0.41 -0.1 1,441,715 + Echvi_1255 0.41 -0.5 1,441,715 + Echvi_1255 0.41 -0.2 1,441,715 + Echvi_1255 0.41 -0.4 1,441,716 - Echvi_1255 0.41 -1.1 1,441,780 + Echvi_1255 0.56 -1.5 1,441,917 + Echvi_1255 0.86 -1.2 1,441,917 + Echvi_1255 0.86 -0.9 1,441,983 + -0.3 1,442,016 - -3.0 1,442,027 + -0.9 1,442,028 - -0.3 1,442,028 - -0.3 1,442,032 + -0.9 1,442,094 + Echvi_1256 0.13 -1.0 1,442,098 - Echvi_1256 0.14 -2.1 1,442,225 + Echvi_1256 0.28 -0.9 1,442,235 + Echvi_1256 0.29 -0.8 1,442,235 + Echvi_1256 0.29 -1.5 1,442,248 + Echvi_1256 0.30 -1.7 1,442,249 - Echvi_1256 0.31 -2.5 1,442,324 + Echvi_1256 0.39 -0.3 1,442,326 + Echvi_1256 0.39 +0.3 1,442,326 + Echvi_1256 0.39 -0.5 1,442,327 - Echvi_1256 0.39 -3.4 1,442,377 + Echvi_1256 0.45 +1.1 1,442,395 + Echvi_1256 0.47 -1.8 1,442,476 + Echvi_1256 0.56 -0.3 1,442,476 + Echvi_1256 0.56 +0.8 1,442,476 + Echvi_1256 0.56 -0.7 1,442,476 + Echvi_1256 0.56 -0.3 1,442,478 + Echvi_1256 0.56 -0.7 1,442,478 + Echvi_1256 0.56 -1.8 1,442,479 - Echvi_1256 0.56 -1.0 1,442,556 + Echvi_1256 0.65 -3.0 1,442,556 + Echvi_1256 0.65 -2.9 1,442,557 - Echvi_1256 0.65 -1.5 1,442,580 - Echvi_1256 0.67 -1.5 1,442,589 + Echvi_1256 0.68 -1.5 1,442,604 - Echvi_1256 0.70 -2.3 1,442,604 - Echvi_1256 0.70 -2.7 1,442,669 + Echvi_1256 0.77 -0.5 1,442,669 + Echvi_1256 0.77 +1.1 1,442,669 + Echvi_1256 0.77 -0.4 1,442,669 + Echvi_1256 0.77 -2.4 1,442,670 - Echvi_1256 0.77 -1.9 1,442,670 - Echvi_1256 0.77 -4.3 1,442,670 - Echvi_1256 0.77 -2.4 1,442,673 - Echvi_1256 0.78 -2.6 1,442,673 - Echvi_1256 0.78 -1.5 1,442,704 - Echvi_1256 0.81 -3.4 1,442,704 - Echvi_1256 0.81 -1.6 1,442,748 - Echvi_1256 0.86 -3.7 1,442,779 + Echvi_1256 0.89 -1.7 1,442,779 + Echvi_1256 0.89 -0.2 1,442,779 + Echvi_1256 0.89 +0.1 1,442,780 - Echvi_1256 0.90 -3.8 1,442,780 - Echvi_1256 0.90 -0.6 1,442,790 - -3.1 1,442,836 + +0.1 1,442,836 + -0.3 1,442,837 - -0.5 1,443,000 + +0.7 1,443,004 + +0.4 1,443,004 + -0.6 1,443,007 + +0.3 1,443,039 - -1.2 1,443,152 - -2.9 1,443,197 - +1.1 1,443,200 + -0.2 1,443,246 + +0.6 1,443,250 + -0.0 1,443,251 - -0.2 1,443,254 - -0.4 1,443,257 + +0.6 1,443,257 + -0.6 1,443,258 - -1.6 1,443,258 - -1.4 1,443,258 - +1.2 1,443,258 - -0.7 1,443,258 - +0.6 1,443,260 + -2.1 1,443,260 + -0.2 1,443,260 + -1.2 1,443,261 - +0.1 1,443,261 - -0.9 1,443,299 + -0.7 1,443,300 - -0.5 1,443,303 + +1.1 1,443,340 - -0.6 1,443,400 + -0.4 1,443,407 + +0.4 1,443,408 - -1.0 1,443,408 - +1.0 1,443,427 + Echvi_1257 0.12 +0.3 1,443,427 + Echvi_1257 0.12 -1.5 1,443,427 + Echvi_1257 0.12 +0.8 1,443,428 - Echvi_1257 0.12 -1.3 1,443,430 + Echvi_1257 0.13 -1.3 1,443,431 - Echvi_1257 0.13 +0.1 1,443,431 - Echvi_1257 0.13 -0.5 1,443,440 - Echvi_1257 0.14 -0.7 1,443,440 - Echvi_1257 0.14 -0.1 1,443,445 + Echvi_1257 0.15 -0.7 1,443,445 + Echvi_1257 0.15 -0.5 1,443,486 - Echvi_1257 0.21 -0.9 1,443,494 - Echvi_1257 0.23 +0.8 1,443,524 + Echvi_1257 0.27 +0.5 1,443,524 + Echvi_1257 0.27 -0.2 1,443,524 + Echvi_1257 0.27 -0.2 1,443,525 - Echvi_1257 0.27 -1.9 1,443,525 - Echvi_1257 0.27 -0.6 1,443,525 - Echvi_1257 0.27 -1.3 1,443,526 + Echvi_1257 0.27 +0.3 1,443,558 - Echvi_1257 0.32 +0.2 1,443,564 + Echvi_1257 0.33 -0.2 1,443,564 + Echvi_1257 0.33 +0.3 1,443,565 - Echvi_1257 0.33 -2.3 1,443,565 - Echvi_1257 0.33 -1.7 1,443,565 - Echvi_1257 0.33 -0.7 1,443,639 - Echvi_1257 0.45 -2.0 1,443,681 - Echvi_1257 0.51 -1.3 1,443,690 + Echvi_1257 0.53 +1.8 1,443,757 + Echvi_1257 0.63 +0.8 1,443,794 + Echvi_1257 0.69 +1.0 1,443,795 - Echvi_1257 0.69 +0.3 1,443,795 - Echvi_1257 0.69 -0.6 1,443,817 + Echvi_1257 0.72 +0.2 1,443,817 + Echvi_1257 0.72 +0.2 1,443,817 + Echvi_1257 0.72 +1.5 1,443,817 + Echvi_1257 0.72 -0.6 1,443,817 + Echvi_1257 0.72 -1.1 1,443,818 - Echvi_1257 0.72 -0.9 1,443,819 + Echvi_1257 0.73 -2.8 1,443,823 + Echvi_1257 0.73 -1.2 1,443,823 + Echvi_1257 0.73 -0.6 1,443,824 - Echvi_1257 0.73 -0.5 1,443,824 - Echvi_1257 0.73 -1.0 1,443,832 + Echvi_1257 0.75 +1.0 1,443,859 - Echvi_1257 0.79 +0.8
Or see this region's nucleotide sequence