Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1069 and Echvi_1070 are separated by 52 nucleotides Echvi_1070 and Echvi_1071 are separated by 58 nucleotides
Echvi_1069: Echvi_1069 - 3-hydroxyacyl-CoA dehydrogenase, at 1,228,665 to 1,231,070
_1069
Echvi_1070: Echvi_1070 - S23 ribosomal protein., at 1,231,123 to 1,231,476
_1070
Echvi_1071: Echvi_1071 - acetyl-CoA acetyltransferases, at 1,231,535 to 1,232,710
_1071
Position (kb)
1231
1232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1230.138 kb on + strand, within Echvi_1069 at 1230.138 kb on + strand, within Echvi_1069 at 1230.139 kb on - strand, within Echvi_1069 at 1230.139 kb on - strand, within Echvi_1069 at 1230.205 kb on + strand, within Echvi_1069 at 1230.230 kb on + strand, within Echvi_1069 at 1230.249 kb on + strand, within Echvi_1069 at 1230.251 kb on + strand, within Echvi_1069 at 1230.252 kb on - strand, within Echvi_1069 at 1230.317 kb on + strand, within Echvi_1069 at 1230.396 kb on + strand, within Echvi_1069 at 1230.429 kb on - strand, within Echvi_1069 at 1230.429 kb on - strand, within Echvi_1069 at 1230.431 kb on + strand, within Echvi_1069 at 1230.432 kb on - strand, within Echvi_1069 at 1230.432 kb on - strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.463 kb on + strand, within Echvi_1069 at 1230.464 kb on - strand, within Echvi_1069 at 1230.464 kb on - strand, within Echvi_1069 at 1230.464 kb on - strand, within Echvi_1069 at 1230.498 kb on + strand, within Echvi_1069 at 1230.498 kb on + strand, within Echvi_1069 at 1230.498 kb on + strand, within Echvi_1069 at 1230.499 kb on - strand, within Echvi_1069 at 1230.499 kb on - strand, within Echvi_1069 at 1230.499 kb on - strand, within Echvi_1069 at 1230.523 kb on + strand, within Echvi_1069 at 1230.573 kb on - strand, within Echvi_1069 at 1230.622 kb on - strand, within Echvi_1069 at 1230.650 kb on - strand, within Echvi_1069 at 1230.774 kb on + strand, within Echvi_1069 at 1230.775 kb on - strand, within Echvi_1069 at 1230.775 kb on - strand, within Echvi_1069 at 1230.800 kb on + strand at 1230.871 kb on - strand at 1230.872 kb on + strand at 1230.873 kb on - strand at 1231.046 kb on + strand at 1231.099 kb on + strand at 1231.100 kb on - strand at 1231.120 kb on - strand at 1231.120 kb on - strand at 1231.128 kb on + strand at 1231.143 kb on - strand at 1231.184 kb on - strand, within Echvi_1070 at 1231.266 kb on + strand, within Echvi_1070 at 1231.266 kb on + strand, within Echvi_1070 at 1231.266 kb on + strand, within Echvi_1070 at 1231.267 kb on - strand, within Echvi_1070 at 1231.267 kb on - strand, within Echvi_1070 at 1231.267 kb on - strand, within Echvi_1070 at 1231.267 kb on - strand, within Echvi_1070 at 1231.342 kb on + strand, within Echvi_1070 at 1231.368 kb on + strand, within Echvi_1070 at 1231.425 kb on - strand, within Echvi_1070 at 1231.518 kb on + strand at 1231.519 kb on - strand at 1231.519 kb on - strand at 1231.521 kb on + strand at 1231.544 kb on + strand at 1231.544 kb on + strand at 1231.544 kb on + strand at 1231.544 kb on + strand at 1231.544 kb on + strand at 1231.544 kb on + strand at 1231.545 kb on - strand at 1231.545 kb on - strand at 1231.545 kb on - strand at 1231.545 kb on - strand at 1231.561 kb on + strand at 1231.561 kb on + strand at 1231.561 kb on + strand at 1231.562 kb on - strand at 1231.562 kb on - strand at 1231.562 kb on - strand at 1231.562 kb on - strand at 1231.562 kb on - strand at 1231.562 kb on - strand at 1231.627 kb on - strand at 1231.627 kb on - strand at 1231.783 kb on + strand, within Echvi_1071 at 1231.783 kb on + strand, within Echvi_1071 at 1231.915 kb on + strand, within Echvi_1071 at 1231.915 kb on + strand, within Echvi_1071 at 1231.915 kb on + strand, within Echvi_1071 at 1231.915 kb on + strand, within Echvi_1071 at 1231.916 kb on - strand, within Echvi_1071 at 1231.916 kb on - strand, within Echvi_1071 at 1231.962 kb on - strand, within Echvi_1071 at 1231.962 kb on - strand, within Echvi_1071 at 1232.004 kb on - strand, within Echvi_1071 at 1232.004 kb on - strand, within Echvi_1071 at 1232.107 kb on - strand, within Echvi_1071 at 1232.107 kb on - strand, within Echvi_1071 at 1232.233 kb on + strand, within Echvi_1071 at 1232.440 kb on + strand, within Echvi_1071
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 1,230,138 + Echvi_1069 0.61 +0.9 1,230,138 + Echvi_1069 0.61 -0.3 1,230,139 - Echvi_1069 0.61 +0.0 1,230,139 - Echvi_1069 0.61 -0.3 1,230,205 + Echvi_1069 0.64 +0.1 1,230,230 + Echvi_1069 0.65 +0.0 1,230,249 + Echvi_1069 0.66 +1.9 1,230,251 + Echvi_1069 0.66 -0.0 1,230,252 - Echvi_1069 0.66 +0.6 1,230,317 + Echvi_1069 0.69 +0.0 1,230,396 + Echvi_1069 0.72 +0.3 1,230,429 - Echvi_1069 0.73 +0.9 1,230,429 - Echvi_1069 0.73 +0.4 1,230,431 + Echvi_1069 0.73 -1.0 1,230,432 - Echvi_1069 0.73 -0.3 1,230,432 - Echvi_1069 0.73 -0.5 1,230,463 + Echvi_1069 0.75 +0.3 1,230,463 + Echvi_1069 0.75 -0.4 1,230,463 + Echvi_1069 0.75 +0.7 1,230,463 + Echvi_1069 0.75 -1.6 1,230,463 + Echvi_1069 0.75 -0.3 1,230,463 + Echvi_1069 0.75 +0.5 1,230,464 - Echvi_1069 0.75 -0.9 1,230,464 - Echvi_1069 0.75 -0.0 1,230,464 - Echvi_1069 0.75 -0.8 1,230,498 + Echvi_1069 0.76 -0.4 1,230,498 + Echvi_1069 0.76 +0.6 1,230,498 + Echvi_1069 0.76 -0.7 1,230,499 - Echvi_1069 0.76 -0.8 1,230,499 - Echvi_1069 0.76 -0.7 1,230,499 - Echvi_1069 0.76 -0.6 1,230,523 + Echvi_1069 0.77 +1.1 1,230,573 - Echvi_1069 0.79 +0.4 1,230,622 - Echvi_1069 0.81 -0.3 1,230,650 - Echvi_1069 0.83 +0.3 1,230,774 + Echvi_1069 0.88 -2.8 1,230,775 - Echvi_1069 0.88 -0.5 1,230,775 - Echvi_1069 0.88 -0.9 1,230,800 + -0.4 1,230,871 - +1.2 1,230,872 + -2.2 1,230,873 - +1.0 1,231,046 + +0.0 1,231,099 + -0.3 1,231,100 - +0.2 1,231,120 - -0.3 1,231,120 - +0.7 1,231,128 + -1.2 1,231,143 - +0.4 1,231,184 - Echvi_1070 0.17 -1.8 1,231,266 + Echvi_1070 0.40 -1.8 1,231,266 + Echvi_1070 0.40 -0.7 1,231,266 + Echvi_1070 0.40 -3.4 1,231,267 - Echvi_1070 0.41 +1.1 1,231,267 - Echvi_1070 0.41 -0.6 1,231,267 - Echvi_1070 0.41 +0.3 1,231,267 - Echvi_1070 0.41 -0.4 1,231,342 + Echvi_1070 0.62 -0.1 1,231,368 + Echvi_1070 0.69 -0.9 1,231,425 - Echvi_1070 0.85 +0.4 1,231,518 + -0.7 1,231,519 - +0.3 1,231,519 - -0.3 1,231,521 + +0.8 1,231,544 + -0.0 1,231,544 + -0.4 1,231,544 + -1.7 1,231,544 + -0.4 1,231,544 + +0.0 1,231,544 + -0.1 1,231,545 - -1.4 1,231,545 - -0.1 1,231,545 - -0.3 1,231,545 - +0.5 1,231,561 + -0.7 1,231,561 + -1.6 1,231,561 + -1.8 1,231,562 - -0.8 1,231,562 - +1.2 1,231,562 - +0.0 1,231,562 - -0.3 1,231,562 - +0.4 1,231,562 - -0.4 1,231,627 - -0.1 1,231,627 - +0.1 1,231,783 + Echvi_1071 0.21 -0.4 1,231,783 + Echvi_1071 0.21 +0.6 1,231,915 + Echvi_1071 0.32 -0.0 1,231,915 + Echvi_1071 0.32 -0.8 1,231,915 + Echvi_1071 0.32 -0.6 1,231,915 + Echvi_1071 0.32 +1.6 1,231,916 - Echvi_1071 0.32 -0.2 1,231,916 - Echvi_1071 0.32 +1.9 1,231,962 - Echvi_1071 0.36 -1.2 1,231,962 - Echvi_1071 0.36 -0.6 1,232,004 - Echvi_1071 0.40 +0.1 1,232,004 - Echvi_1071 0.40 -0.8 1,232,107 - Echvi_1071 0.49 -0.9 1,232,107 - Echvi_1071 0.49 -1.1 1,232,233 + Echvi_1071 0.59 -1.2 1,232,440 + Echvi_1071 0.77 -0.1
Or see this region's nucleotide sequence