Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0835

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0832 and Echvi_0833 are separated by 25 nucleotidesEchvi_0833 and Echvi_0834 are separated by 42 nucleotidesEchvi_0834 and Echvi_0835 overlap by 4 nucleotidesEchvi_0835 and Echvi_0836 are separated by 194 nucleotides Echvi_0832: Echvi_0832 - hypothetical protein, at 948,757 to 949,425 _0832 Echvi_0833: Echvi_0833 - hypothetical protein, at 949,451 to 949,600 _0833 Echvi_0834: Echvi_0834 - hypothetical protein, at 949,643 to 949,960 _0834 Echvi_0835: Echvi_0835 - Uncharacterized iron-regulated membrane protein, at 949,957 to 951,282 _0835 Echvi_0836: Echvi_0836 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 951,477 to 953,936 _0836 Position (kb) 949 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 949.032 kb on + strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.076 kb on + strand, within Echvi_0832at 949.077 kb on - strand, within Echvi_0832at 949.087 kb on - strand, within Echvi_0832at 949.108 kb on - strand, within Echvi_0832at 949.145 kb on - strand, within Echvi_0832at 949.192 kb on - strand, within Echvi_0832at 949.247 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.250 kb on + strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.251 kb on - strand, within Echvi_0832at 949.282 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.323 kb on - strand, within Echvi_0832at 949.338 kb on + strand, within Echvi_0832at 949.428 kb on + strandat 949.429 kb on - strandat 949.489 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.519 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.523 kb on - strand, within Echvi_0833at 949.525 kb on + strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.526 kb on - strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.566 kb on + strand, within Echvi_0833at 949.578 kb on - strand, within Echvi_0833at 949.657 kb on - strandat 949.657 kb on - strandat 949.785 kb on + strand, within Echvi_0834at 949.785 kb on + strand, within Echvi_0834at 949.786 kb on - strand, within Echvi_0834at 949.816 kb on + strand, within Echvi_0834at 949.852 kb on + strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.853 kb on - strand, within Echvi_0834at 949.872 kb on + strand, within Echvi_0834at 949.873 kb on - strand, within Echvi_0834at 949.874 kb on + strand, within Echvi_0834at 949.946 kb on + strandat 949.960 kb on + strandat 950.037 kb on + strandat 950.049 kb on - strandat 950.101 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.174 kb on + strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.175 kb on - strand, within Echvi_0835at 950.270 kb on + strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.276 kb on - strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.327 kb on + strand, within Echvi_0835at 950.328 kb on - strand, within Echvi_0835at 950.330 kb on + strand, within Echvi_0835at 950.330 kb on + strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.331 kb on - strand, within Echvi_0835at 950.361 kb on + strand, within Echvi_0835at 950.362 kb on - strand, within Echvi_0835at 950.366 kb on + strand, within Echvi_0835at 950.366 kb on + strand, within Echvi_0835at 950.383 kb on - strand, within Echvi_0835at 950.402 kb on + strand, within Echvi_0835at 950.403 kb on - strand, within Echvi_0835at 950.427 kb on - strand, within Echvi_0835at 950.463 kb on + strand, within Echvi_0835at 950.463 kb on + strand, within Echvi_0835at 950.464 kb on - strand, within Echvi_0835at 950.670 kb on + strand, within Echvi_0835at 950.804 kb on - strand, within Echvi_0835at 950.865 kb on - strand, within Echvi_0835at 950.877 kb on - strand, within Echvi_0835at 950.892 kb on + strand, within Echvi_0835at 951.019 kb on + strand, within Echvi_0835at 951.020 kb on - strand, within Echvi_0835at 951.021 kb on + strand, within Echvi_0835at 951.021 kb on + strand, within Echvi_0835at 951.022 kb on - strand, within Echvi_0835at 951.022 kb on - strand, within Echvi_0835at 951.088 kb on + strand, within Echvi_0835at 951.090 kb on + strand, within Echvi_0835at 951.090 kb on + strand, within Echvi_0835at 951.091 kb on - strand, within Echvi_0835at 951.091 kb on - strand, within Echvi_0835at 951.139 kb on + strand, within Echvi_0835at 951.237 kb on - strandat 951.237 kb on - strandat 951.237 kb on - strandat 951.268 kb on + strandat 951.269 kb on - strandat 951.282 kb on + strandat 951.283 kb on - strandat 951.293 kb on - strandat 951.307 kb on + strandat 951.308 kb on - strandat 951.311 kb on + strandat 951.312 kb on - strandat 951.314 kb on - strandat 951.393 kb on + strandat 951.394 kb on - strandat 951.478 kb on + strandat 951.487 kb on + strandat 951.539 kb on - strandat 951.539 kb on - strandat 951.544 kb on + strandat 951.544 kb on + strandat 951.545 kb on - strandat 951.545 kb on - strandat 951.545 kb on - strandat 951.545 kb on - strandat 951.552 kb on + strandat 951.575 kb on + strandat 951.576 kb on - strandat 951.581 kb on + strandat 951.616 kb on + strandat 951.616 kb on + strandat 951.617 kb on - strandat 951.617 kb on - strandat 951.619 kb on + strandat 951.633 kb on + strandat 951.643 kb on + strandat 951.753 kb on - strand, within Echvi_0836at 951.757 kb on + strand, within Echvi_0836at 951.757 kb on + strand, within Echvi_0836at 951.757 kb on + strand, within Echvi_0836at 951.757 kb on + strand, within Echvi_0836at 951.757 kb on + strand, within Echvi_0836at 951.758 kb on - strand, within Echvi_0836at 951.758 kb on - strand, within Echvi_0836at 951.853 kb on + strand, within Echvi_0836at 951.859 kb on + strand, within Echvi_0836at 951.859 kb on + strand, within Echvi_0836at 951.859 kb on + strand, within Echvi_0836at 951.859 kb on + strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.860 kb on - strand, within Echvi_0836at 951.870 kb on + strand, within Echvi_0836at 951.871 kb on - strand, within Echvi_0836at 951.942 kb on + strand, within Echvi_0836at 951.942 kb on + strand, within Echvi_0836at 951.980 kb on - strand, within Echvi_0836at 952.003 kb on + strand, within Echvi_0836at 952.006 kb on + strand, within Echvi_0836at 952.007 kb on - strand, within Echvi_0836at 952.112 kb on + strand, within Echvi_0836at 952.113 kb on - strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.153 kb on + strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.154 kb on - strand, within Echvi_0836at 952.157 kb on + strand, within Echvi_0836at 952.157 kb on + strand, within Echvi_0836at 952.158 kb on - strand, within Echvi_0836at 952.170 kb on - strand, within Echvi_0836at 952.170 kb on - strand, within Echvi_0836at 952.170 kb on - strand, within Echvi_0836at 952.172 kb on + strand, within Echvi_0836at 952.173 kb on - strand, within Echvi_0836at 952.253 kb on - strand, within Echvi_0836at 952.253 kb on - strand, within Echvi_0836at 952.269 kb on - strand, within Echvi_0836at 952.271 kb on - strand, within Echvi_0836at 952.273 kb on + strand, within Echvi_0836at 952.274 kb on - strand, within Echvi_0836at 952.274 kb on - strand, within Echvi_0836at 952.274 kb on - strand, within Echvi_0836

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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949,032 + Echvi_0832 0.41 -0.6
949,032 + Echvi_0832 0.41 -1.5
949,033 - Echvi_0832 0.41 +0.1
949,033 - Echvi_0832 0.41 +0.5
949,034 + Echvi_0832 0.41 -0.1
949,034 + Echvi_0832 0.41 -0.2
949,034 + Echvi_0832 0.41 +0.3
949,035 - Echvi_0832 0.42 -1.5
949,035 - Echvi_0832 0.42 +0.3
949,042 - Echvi_0832 0.43 +0.8
949,042 - Echvi_0832 0.43 -0.6
949,042 - Echvi_0832 0.43 +0.0
949,068 - Echvi_0832 0.46 +0.4
949,068 - Echvi_0832 0.46 -0.1
949,076 + Echvi_0832 0.48 -0.2
949,077 - Echvi_0832 0.48 -0.0
949,087 - Echvi_0832 0.49 +0.8
949,108 - Echvi_0832 0.52 -0.3
949,145 - Echvi_0832 0.58 -0.3
949,192 - Echvi_0832 0.65 -1.8
949,247 + Echvi_0832 0.73 +0.8
949,250 + Echvi_0832 0.74 -0.9
949,250 + Echvi_0832 0.74 -0.5
949,250 + Echvi_0832 0.74 -0.3
949,251 - Echvi_0832 0.74 -0.6
949,251 - Echvi_0832 0.74 -0.5
949,282 - Echvi_0832 0.78 +0.2
949,323 - Echvi_0832 0.85 -0.1
949,323 - Echvi_0832 0.85 -0.4
949,323 - Echvi_0832 0.85 +0.2
949,338 + Echvi_0832 0.87 -0.9
949,428 + +0.6
949,429 - -0.3
949,489 - Echvi_0833 0.25 -0.7
949,519 - Echvi_0833 0.45 +0.1
949,519 - Echvi_0833 0.45 -0.1
949,523 - Echvi_0833 0.48 -0.5
949,523 - Echvi_0833 0.48 +0.4
949,525 + Echvi_0833 0.49 -0.1
949,526 - Echvi_0833 0.50 +0.5
949,526 - Echvi_0833 0.50 +0.3
949,566 + Echvi_0833 0.77 +0.1
949,566 + Echvi_0833 0.77 +0.2
949,578 - Echvi_0833 0.85 -0.5
949,657 - +0.0
949,657 - +1.0
949,785 + Echvi_0834 0.45 -0.9
949,785 + Echvi_0834 0.45 -1.5
949,786 - Echvi_0834 0.45 -0.3
949,816 + Echvi_0834 0.54 +0.9
949,852 + Echvi_0834 0.66 -0.8
949,853 - Echvi_0834 0.66 +0.1
949,853 - Echvi_0834 0.66 -0.4
949,853 - Echvi_0834 0.66 +0.1
949,872 + Echvi_0834 0.72 -0.2
949,873 - Echvi_0834 0.72 +0.8
949,874 + Echvi_0834 0.73 +0.0
949,946 + -1.8
949,960 + +0.3
950,037 + -0.3
950,049 - +0.2
950,101 + Echvi_0835 0.11 -0.8
950,174 + Echvi_0835 0.16 -1.0
950,174 + Echvi_0835 0.16 +0.2
950,174 + Echvi_0835 0.16 -0.2
950,174 + Echvi_0835 0.16 +0.5
950,174 + Echvi_0835 0.16 -0.0
950,175 - Echvi_0835 0.16 +0.2
950,175 - Echvi_0835 0.16 -1.1
950,175 - Echvi_0835 0.16 +1.2
950,270 + Echvi_0835 0.24 -0.9
950,276 - Echvi_0835 0.24 +0.0
950,276 - Echvi_0835 0.24 -0.9
950,276 - Echvi_0835 0.24 +0.1
950,327 + Echvi_0835 0.28 -1.2
950,327 + Echvi_0835 0.28 -1.1
950,327 + Echvi_0835 0.28 -0.9
950,328 - Echvi_0835 0.28 +0.4
950,330 + Echvi_0835 0.28 +0.0
950,330 + Echvi_0835 0.28 -0.1
950,331 - Echvi_0835 0.28 -0.5
950,331 - Echvi_0835 0.28 -2.2
950,331 - Echvi_0835 0.28 -0.5
950,361 + Echvi_0835 0.30 -0.8
950,362 - Echvi_0835 0.31 -0.5
950,366 + Echvi_0835 0.31 +0.4
950,366 + Echvi_0835 0.31 -1.2
950,383 - Echvi_0835 0.32 -1.0
950,402 + Echvi_0835 0.34 -1.6
950,403 - Echvi_0835 0.34 -3.6
950,427 - Echvi_0835 0.35 -0.2
950,463 + Echvi_0835 0.38 -1.0
950,463 + Echvi_0835 0.38 +2.3
950,464 - Echvi_0835 0.38 +1.0
950,670 + Echvi_0835 0.54 -0.2
950,804 - Echvi_0835 0.64 -0.3
950,865 - Echvi_0835 0.68 -1.3
950,877 - Echvi_0835 0.69 -0.7
950,892 + Echvi_0835 0.71 -0.0
951,019 + Echvi_0835 0.80 -0.8
951,020 - Echvi_0835 0.80 +0.8
951,021 + Echvi_0835 0.80 +1.8
951,021 + Echvi_0835 0.80 -0.1
951,022 - Echvi_0835 0.80 +1.4
951,022 - Echvi_0835 0.80 +0.4
951,088 + Echvi_0835 0.85 -0.4
951,090 + Echvi_0835 0.85 +0.1
951,090 + Echvi_0835 0.85 -0.5
951,091 - Echvi_0835 0.86 +0.1
951,091 - Echvi_0835 0.86 +0.5
951,139 + Echvi_0835 0.89 -2.8
951,237 - -1.0
951,237 - +0.2
951,237 - +0.1
951,268 + -0.6
951,269 - -1.2
951,282 + -0.3
951,283 - +0.2
951,293 - -0.6
951,307 + -0.3
951,308 - -1.3
951,311 + +0.2
951,312 - -0.1
951,314 - +0.1
951,393 + -1.3
951,394 - -0.8
951,478 + +1.2
951,487 + -1.6
951,539 - -3.0
951,539 - -1.0
951,544 + -0.2
951,544 + -0.5
951,545 - -0.4
951,545 - -0.8
951,545 - +0.3
951,545 - -1.7
951,552 + +0.4
951,575 + +1.3
951,576 - +0.5
951,581 + +0.1
951,616 + +0.8
951,616 + -0.3
951,617 - -1.0
951,617 - +0.8
951,619 + +0.1
951,633 + -0.6
951,643 + +0.5
951,753 - Echvi_0836 0.11 -1.0
951,757 + Echvi_0836 0.11 -0.9
951,757 + Echvi_0836 0.11 -0.3
951,757 + Echvi_0836 0.11 +1.3
951,757 + Echvi_0836 0.11 +0.6
951,757 + Echvi_0836 0.11 -0.5
951,758 - Echvi_0836 0.11 +0.1
951,758 - Echvi_0836 0.11 -0.0
951,853 + Echvi_0836 0.15 +0.1
951,859 + Echvi_0836 0.16 +0.2
951,859 + Echvi_0836 0.16 -0.4
951,859 + Echvi_0836 0.16 -0.0
951,859 + Echvi_0836 0.16 -0.9
951,860 - Echvi_0836 0.16 -0.7
951,860 - Echvi_0836 0.16 +0.2
951,860 - Echvi_0836 0.16 -1.2
951,860 - Echvi_0836 0.16 -0.7
951,860 - Echvi_0836 0.16 -1.1
951,860 - Echvi_0836 0.16 -0.9
951,860 - Echvi_0836 0.16 -0.0
951,870 + Echvi_0836 0.16 -0.2
951,871 - Echvi_0836 0.16 -0.2
951,942 + Echvi_0836 0.19 +0.2
951,942 + Echvi_0836 0.19 -0.3
951,980 - Echvi_0836 0.20 -1.6
952,003 + Echvi_0836 0.21 -0.9
952,006 + Echvi_0836 0.22 -0.0
952,007 - Echvi_0836 0.22 -0.1
952,112 + Echvi_0836 0.26 -0.2
952,113 - Echvi_0836 0.26 -0.2
952,153 + Echvi_0836 0.27 +0.2
952,153 + Echvi_0836 0.27 +1.3
952,153 + Echvi_0836 0.27 -0.5
952,153 + Echvi_0836 0.27 +0.8
952,153 + Echvi_0836 0.27 +0.1
952,153 + Echvi_0836 0.27 -0.0
952,153 + Echvi_0836 0.27 +0.2
952,153 + Echvi_0836 0.27 -0.6
952,153 + Echvi_0836 0.27 +0.5
952,154 - Echvi_0836 0.28 -2.8
952,154 - Echvi_0836 0.28 +0.5
952,154 - Echvi_0836 0.28 -0.3
952,154 - Echvi_0836 0.28 +0.2
952,154 - Echvi_0836 0.28 +0.8
952,154 - Echvi_0836 0.28 -2.0
952,154 - Echvi_0836 0.28 -0.5
952,154 - Echvi_0836 0.28 +1.2
952,154 - Echvi_0836 0.28 -0.2
952,157 + Echvi_0836 0.28 -1.2
952,157 + Echvi_0836 0.28 -0.6
952,158 - Echvi_0836 0.28 +0.2
952,170 - Echvi_0836 0.28 -0.2
952,170 - Echvi_0836 0.28 +2.1
952,170 - Echvi_0836 0.28 -1.7
952,172 + Echvi_0836 0.28 -0.2
952,173 - Echvi_0836 0.28 +0.7
952,253 - Echvi_0836 0.32 +0.6
952,253 - Echvi_0836 0.32 +0.1
952,269 - Echvi_0836 0.32 +0.4
952,271 - Echvi_0836 0.32 +0.6
952,273 + Echvi_0836 0.32 -2.2
952,274 - Echvi_0836 0.32 +0.1
952,274 - Echvi_0836 0.32 -0.4
952,274 - Echvi_0836 0.32 +1.2

Or see this region's nucleotide sequence