Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0722 and Echvi_0723 are separated by 59 nucleotides Echvi_0723 and Echvi_0724 are separated by 30 nucleotides Echvi_0724 and Echvi_0725 overlap by 4 nucleotides Echvi_0725 and Echvi_0726 overlap by 4 nucleotides Echvi_0726 and Echvi_0727 are separated by 11 nucleotides
Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201
_0722
Echvi_0723: Echvi_0723 - hypothetical protein, at 814,261 to 814,734
_0723
Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304
_0724
Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741
_0725
Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226
_0726
Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489
_0727
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 813.788 kb on + strand, within Echvi_0722 at 813.871 kb on - strand, within Echvi_0722 at 813.874 kb on + strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.941 kb on - strand, within Echvi_0722 at 813.950 kb on - strand, within Echvi_0722 at 813.981 kb on + strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 814.108 kb on - strand at 814.121 kb on + strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.126 kb on + strand at 814.126 kb on + strand at 814.126 kb on + strand at 814.320 kb on + strand, within Echvi_0723 at 814.321 kb on - strand, within Echvi_0723 at 814.388 kb on + strand, within Echvi_0723 at 814.389 kb on - strand, within Echvi_0723 at 814.436 kb on + strand, within Echvi_0723 at 814.437 kb on - strand, within Echvi_0723 at 814.509 kb on + strand, within Echvi_0723 at 814.652 kb on + strand, within Echvi_0723 at 814.663 kb on + strand, within Echvi_0723 at 814.672 kb on - strand, within Echvi_0723 at 814.715 kb on - strand at 814.735 kb on - strand at 814.755 kb on - strand at 814.755 kb on - strand at 814.771 kb on - strand at 814.771 kb on - strand at 814.890 kb on + strand, within Echvi_0724 at 814.992 kb on - strand, within Echvi_0724 at 814.992 kb on - strand, within Echvi_0724 at 814.998 kb on + strand, within Echvi_0724 at 815.027 kb on + strand, within Echvi_0724 at 815.183 kb on + strand, within Echvi_0724 at 815.183 kb on + strand, within Echvi_0724 at 815.184 kb on - strand, within Echvi_0724 at 815.184 kb on - strand, within Echvi_0724 at 815.285 kb on - strand at 815.333 kb on + strand at 815.334 kb on - strand at 815.406 kb on - strand, within Echvi_0725 at 815.701 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.705 kb on - strand at 815.792 kb on - strand, within Echvi_0726 at 815.824 kb on + strand, within Echvi_0726 at 815.825 kb on - strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 816.166 kb on - strand, within Echvi_0726 at 816.202 kb on + strand at 816.202 kb on + strand at 816.203 kb on - strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.229 kb on - strand at 816.233 kb on - strand at 816.236 kb on + strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.246 kb on - strand at 816.250 kb on - strand at 816.253 kb on - strand at 816.276 kb on + strand, within Echvi_0727
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 813,788 + Echvi_0722 0.70 -0.9 813,871 - Echvi_0722 0.76 -2.2 813,874 + Echvi_0722 0.76 -1.1 813,875 - Echvi_0722 0.76 -0.6 813,875 - Echvi_0722 0.76 +1.2 813,875 - Echvi_0722 0.76 -0.6 813,941 - Echvi_0722 0.81 -0.8 813,950 - Echvi_0722 0.82 -0.9 813,981 + Echvi_0722 0.84 -0.9 813,982 - Echvi_0722 0.84 +1.4 813,982 - Echvi_0722 0.84 +0.4 813,982 - Echvi_0722 0.84 -0.3 814,108 - -0.1 814,121 + -0.5 814,122 - +0.5 814,122 - +0.3 814,122 - -1.9 814,122 - -1.3 814,126 + +0.6 814,126 + -1.0 814,126 + -0.2 814,320 + Echvi_0723 0.12 +0.4 814,321 - Echvi_0723 0.13 -0.6 814,388 + Echvi_0723 0.27 +2.8 814,389 - Echvi_0723 0.27 +0.3 814,436 + Echvi_0723 0.37 +0.6 814,437 - Echvi_0723 0.37 -1.4 814,509 + Echvi_0723 0.52 -0.1 814,652 + Echvi_0723 0.82 -0.6 814,663 + Echvi_0723 0.85 -1.0 814,672 - Echvi_0723 0.87 +0.0 814,715 - +0.8 814,735 - -1.1 814,755 - -1.6 814,755 - +0.0 814,771 - -1.2 814,771 - +0.8 814,890 + Echvi_0724 0.23 -1.6 814,992 - Echvi_0724 0.42 +0.2 814,992 - Echvi_0724 0.42 -1.0 814,998 + Echvi_0724 0.43 +0.2 815,027 + Echvi_0724 0.49 -1.5 815,183 + Echvi_0724 0.77 -1.8 815,183 + Echvi_0724 0.77 -0.6 815,184 - Echvi_0724 0.78 +1.8 815,184 - Echvi_0724 0.78 +1.8 815,285 - +0.5 815,333 + +1.4 815,334 - -0.7 815,406 - Echvi_0725 0.24 -1.5 815,701 + -1.9 815,704 + +0.2 815,704 + -0.6 815,704 + +1.2 815,705 - +2.1 815,792 - Echvi_0726 0.11 +0.4 815,824 + Echvi_0726 0.18 -0.2 815,825 - Echvi_0726 0.18 +0.0 815,826 + Echvi_0726 0.18 +0.2 815,826 + Echvi_0726 0.18 +0.4 815,827 - Echvi_0726 0.18 +0.0 815,827 - Echvi_0726 0.18 +2.2 815,827 - Echvi_0726 0.18 +0.8 815,827 - Echvi_0726 0.18 -0.2 815,914 + Echvi_0726 0.36 -1.9 815,914 + Echvi_0726 0.36 -0.6 815,914 + Echvi_0726 0.36 +0.0 815,914 + Echvi_0726 0.36 -0.0 815,990 + Echvi_0726 0.52 +0.7 815,990 + Echvi_0726 0.52 +0.5 815,990 + Echvi_0726 0.52 -1.5 816,166 - Echvi_0726 0.88 -0.7 816,202 + +0.2 816,202 + +0.2 816,203 - -0.2 816,204 + -0.7 816,204 + -0.4 816,204 + +0.4 816,204 + -1.1 816,204 + -0.1 816,205 - +0.2 816,205 - -0.2 816,205 - +0.5 816,205 - -0.1 816,205 - -1.0 816,205 - +0.8 816,205 - +0.5 816,229 - -0.6 816,233 - +1.7 816,236 + -0.4 816,237 - -0.1 816,237 - -1.9 816,237 - -0.1 816,246 - +2.0 816,250 - +0.4 816,253 - -0.6 816,276 + Echvi_0727 0.15 -0.5
Or see this region's nucleotide sequence