Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0709 and Echvi_0710 are separated by 194 nucleotides Echvi_0710 and Echvi_0711 are separated by 9 nucleotides Echvi_0711 and Echvi_0712 are separated by 22 nucleotides
Echvi_0709: Echvi_0709 - translation initiation factor IF-2, at 799,849 to 802,848
_0709
Echvi_0710: Echvi_0710 - hypothetical protein, at 803,043 to 803,372
_0710
Echvi_0711: Echvi_0711 - hypothetical protein, at 803,382 to 803,615
_0711
Echvi_0712: Echvi_0712 - hypothetical protein, at 803,638 to 804,831
_0712
Position (kb) 803
804 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 802.886 kb on - strand at 802.891 kb on - strand at 802.975 kb on + strand at 803.125 kb on + strand, within Echvi_0710 at 803.125 kb on + strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.143 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.156 kb on + strand, within Echvi_0710 at 803.168 kb on + strand, within Echvi_0710 at 803.195 kb on - strand, within Echvi_0710 at 803.343 kb on + strand at 803.350 kb on + strand at 803.351 kb on - strand at 803.363 kb on - strand at 803.363 kb on - strand at 803.370 kb on + strand at 803.410 kb on - strand, within Echvi_0711 at 803.410 kb on - strand, within Echvi_0711 at 803.418 kb on - strand, within Echvi_0711 at 803.522 kb on - strand, within Echvi_0711 at 803.522 kb on - strand, within Echvi_0711 at 803.539 kb on + strand, within Echvi_0711 at 803.621 kb on + strand at 803.628 kb on + strand at 803.657 kb on + strand at 803.657 kb on + strand at 803.671 kb on - strand at 803.685 kb on + strand at 803.694 kb on + strand at 803.700 kb on - strand at 803.895 kb on - strand, within Echvi_0712 at 803.930 kb on + strand, within Echvi_0712 at 803.950 kb on - strand, within Echvi_0712 at 804.137 kb on - strand, within Echvi_0712 at 804.201 kb on + strand, within Echvi_0712 at 804.201 kb on + strand, within Echvi_0712 at 804.202 kb on - strand, within Echvi_0712 at 804.205 kb on - strand, within Echvi_0712 at 804.235 kb on - strand, within Echvi_0712 at 804.344 kb on + strand, within Echvi_0712 at 804.345 kb on - strand, within Echvi_0712 at 804.345 kb on - strand, within Echvi_0712 at 804.345 kb on - strand, within Echvi_0712 at 804.360 kb on + strand, within Echvi_0712 at 804.361 kb on - strand, within Echvi_0712 at 804.372 kb on + strand, within Echvi_0712 at 804.372 kb on + strand, within Echvi_0712 at 804.373 kb on - strand, within Echvi_0712 at 804.373 kb on - strand, within Echvi_0712 at 804.377 kb on - strand, within Echvi_0712 at 804.385 kb on - strand, within Echvi_0712 at 804.451 kb on - strand, within Echvi_0712 at 804.451 kb on - strand, within Echvi_0712 at 804.451 kb on - strand, within Echvi_0712 at 804.451 kb on - strand, within Echvi_0712 at 804.516 kb on - strand, within Echvi_0712 at 804.518 kb on + strand, within Echvi_0712 at 804.526 kb on + strand, within Echvi_0712 at 804.526 kb on + strand, within Echvi_0712 at 804.527 kb on - strand, within Echvi_0712
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 802,886 - -1.8 802,891 - -0.8 802,975 + -1.4 803,125 + Echvi_0710 0.25 +0.0 803,125 + Echvi_0710 0.25 +0.5 803,126 - Echvi_0710 0.25 -2.2 803,126 - Echvi_0710 0.25 +0.2 803,126 - Echvi_0710 0.25 +1.0 803,127 + Echvi_0710 0.25 +0.3 803,127 + Echvi_0710 0.25 -0.3 803,127 + Echvi_0710 0.25 -2.3 803,143 + Echvi_0710 0.30 -0.1 803,152 + Echvi_0710 0.33 -0.2 803,152 + Echvi_0710 0.33 -0.1 803,152 + Echvi_0710 0.33 -0.0 803,156 + Echvi_0710 0.34 +1.1 803,168 + Echvi_0710 0.38 +0.3 803,195 - Echvi_0710 0.46 +0.6 803,343 + -2.7 803,350 + +0.3 803,351 - -0.5 803,363 - -0.6 803,363 - -0.5 803,370 + -0.5 803,410 - Echvi_0711 0.12 -0.6 803,410 - Echvi_0711 0.12 -0.6 803,418 - Echvi_0711 0.15 -0.4 803,522 - Echvi_0711 0.60 +0.2 803,522 - Echvi_0711 0.60 +0.4 803,539 + Echvi_0711 0.67 -0.9 803,621 + -0.2 803,628 + -0.8 803,657 + +0.5 803,657 + -0.0 803,671 - -1.8 803,685 + +0.4 803,694 + -0.1 803,700 - +0.5 803,895 - Echvi_0712 0.22 -0.2 803,930 + Echvi_0712 0.24 +3.8 803,950 - Echvi_0712 0.26 +0.4 804,137 - Echvi_0712 0.42 +0.0 804,201 + Echvi_0712 0.47 +0.5 804,201 + Echvi_0712 0.47 -0.3 804,202 - Echvi_0712 0.47 +0.2 804,205 - Echvi_0712 0.47 -1.2 804,235 - Echvi_0712 0.50 -2.0 804,344 + Echvi_0712 0.59 -2.9 804,345 - Echvi_0712 0.59 +1.0 804,345 - Echvi_0712 0.59 -1.0 804,345 - Echvi_0712 0.59 +0.7 804,360 + Echvi_0712 0.60 -1.0 804,361 - Echvi_0712 0.61 -1.4 804,372 + Echvi_0712 0.61 +0.2 804,372 + Echvi_0712 0.61 +1.0 804,373 - Echvi_0712 0.62 +1.8 804,373 - Echvi_0712 0.62 +0.2 804,377 - Echvi_0712 0.62 -0.6 804,385 - Echvi_0712 0.63 +0.1 804,451 - Echvi_0712 0.68 -1.5 804,451 - Echvi_0712 0.68 -0.8 804,451 - Echvi_0712 0.68 +0.1 804,451 - Echvi_0712 0.68 -1.1 804,516 - Echvi_0712 0.74 +0.6 804,518 + Echvi_0712 0.74 -1.1 804,526 + Echvi_0712 0.74 -0.5 804,526 + Echvi_0712 0.74 -0.5 804,527 - Echvi_0712 0.74 -1.2
Or see this region's nucleotide sequence