Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0600

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0598 and Echvi_0599 are separated by 5 nucleotidesEchvi_0599 and Echvi_0600 overlap by 12 nucleotidesEchvi_0600 and Echvi_0601 are separated by 153 nucleotides Echvi_0598: Echvi_0598 - K+-dependent Na+/Ca+ exchanger related-protein, at 675,311 to 676,240 _0598 Echvi_0599: Echvi_0599 - hypothetical protein, at 676,246 to 676,704 _0599 Echvi_0600: Echvi_0600 - L-serine dehydratase, iron-sulfur-dependent, alpha subunit, at 676,693 to 677,601 _0600 Echvi_0601: Echvi_0601 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 677,755 to 678,714 _0601 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 675.731 kb on + strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.817 kb on - strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.822 kb on - strand, within Echvi_0598at 675.823 kb on + strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 676.012 kb on - strand, within Echvi_0598at 676.019 kb on - strand, within Echvi_0598at 676.053 kb on + strand, within Echvi_0598at 676.063 kb on + strand, within Echvi_0598at 676.064 kb on - strand, within Echvi_0598at 676.089 kb on + strand, within Echvi_0598at 676.135 kb on + strand, within Echvi_0598at 676.141 kb on - strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.157 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.218 kb on + strandat 676.218 kb on + strandat 676.219 kb on - strandat 676.219 kb on - strandat 676.221 kb on - strandat 676.221 kb on - strandat 676.228 kb on - strandat 676.256 kb on - strandat 676.256 kb on - strandat 676.257 kb on + strandat 676.258 kb on - strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.280 kb on - strandat 676.333 kb on - strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.339 kb on - strand, within Echvi_0599at 676.356 kb on - strand, within Echvi_0599at 676.398 kb on + strand, within Echvi_0599at 676.568 kb on + strand, within Echvi_0599at 676.569 kb on - strand, within Echvi_0599at 676.642 kb on - strand, within Echvi_0599at 676.694 kb on + strandat 676.694 kb on + strandat 676.695 kb on - strandat 676.809 kb on + strand, within Echvi_0600at 676.847 kb on - strand, within Echvi_0600at 676.876 kb on - strand, within Echvi_0600at 676.949 kb on - strand, within Echvi_0600at 676.987 kb on + strand, within Echvi_0600at 676.988 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 677.034 kb on + strand, within Echvi_0600at 677.051 kb on + strand, within Echvi_0600at 677.215 kb on + strand, within Echvi_0600at 677.221 kb on - strand, within Echvi_0600at 677.223 kb on - strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.283 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.450 kb on - strand, within Echvi_0600at 677.454 kb on + strand, within Echvi_0600at 677.455 kb on - strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.534 kb on + strandat 677.594 kb on + strandat 677.614 kb on + strandat 677.615 kb on - strandat 677.615 kb on - strandat 677.616 kb on + strandat 677.617 kb on - strandat 677.622 kb on - strandat 677.770 kb on + strandat 677.770 kb on + strandat 677.797 kb on - strandat 677.806 kb on + strandat 677.834 kb on + strandat 677.874 kb on + strand, within Echvi_0601at 677.960 kb on + strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.964 kb on + strand, within Echvi_0601at 677.994 kb on + strand, within Echvi_0601at 677.997 kb on + strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.220 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.302 kb on + strand, within Echvi_0601at 678.314 kb on + strand, within Echvi_0601at 678.315 kb on - strand, within Echvi_0601at 678.369 kb on + strand, within Echvi_0601at 678.398 kb on + strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.402 kb on + strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.432 kb on + strand, within Echvi_0601at 678.433 kb on - strand, within Echvi_0601at 678.476 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.543 kb on - strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.591 kb on - strand, within Echvi_0601

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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675,731 + Echvi_0598 0.45 +0.7
675,732 - Echvi_0598 0.45 +0.8
675,732 - Echvi_0598 0.45 +0.4
675,817 - Echvi_0598 0.54 -0.1
675,821 + Echvi_0598 0.55 -0.2
675,821 + Echvi_0598 0.55 +1.3
675,822 - Echvi_0598 0.55 -0.4
675,823 + Echvi_0598 0.55 -0.1
675,826 - Echvi_0598 0.55 -0.3
675,826 - Echvi_0598 0.55 +0.8
676,012 - Echvi_0598 0.75 -1.5
676,019 - Echvi_0598 0.76 +1.4
676,053 + Echvi_0598 0.80 +0.1
676,063 + Echvi_0598 0.81 -0.6
676,064 - Echvi_0598 0.81 -1.3
676,089 + Echvi_0598 0.84 +0.6
676,135 + Echvi_0598 0.89 +1.4
676,141 - Echvi_0598 0.89 +1.4
676,143 + Echvi_0598 0.89 -0.0
676,143 + Echvi_0598 0.89 -0.5
676,143 + Echvi_0598 0.89 +0.4
676,143 + Echvi_0598 0.89 -0.2
676,157 - +0.4
676,201 - -0.9
676,201 - -0.2
676,201 - -1.7
676,218 + -0.4
676,218 + -1.1
676,219 - +1.2
676,219 - -1.1
676,221 - +1.8
676,221 - -0.2
676,228 - -0.7
676,256 - -0.5
676,256 - +3.4
676,257 + -0.5
676,258 - -0.0
676,279 + +1.8
676,279 + +0.6
676,279 + -0.7
676,279 + +0.6
676,280 - +0.0
676,333 - Echvi_0599 0.19 -1.8
676,336 + Echvi_0599 0.20 +0.4
676,336 + Echvi_0599 0.20 +0.3
676,339 - Echvi_0599 0.20 +0.1
676,356 - Echvi_0599 0.24 +1.6
676,398 + Echvi_0599 0.33 -0.4
676,568 + Echvi_0599 0.70 -1.4
676,569 - Echvi_0599 0.70 +1.2
676,642 - Echvi_0599 0.86 +0.0
676,694 + -0.7
676,694 + -1.6
676,695 - -1.2
676,809 + Echvi_0600 0.13 -1.2
676,847 - Echvi_0600 0.17 -1.1
676,876 - Echvi_0600 0.20 -2.1
676,949 - Echvi_0600 0.28 -1.0
676,987 + Echvi_0600 0.32 -0.9
676,988 - Echvi_0600 0.32 -0.9
676,993 - Echvi_0600 0.33 -1.5
676,993 - Echvi_0600 0.33 +0.2
676,993 - Echvi_0600 0.33 -0.8
676,993 - Echvi_0600 0.33 +0.8
677,034 + Echvi_0600 0.38 -0.7
677,051 + Echvi_0600 0.39 -0.8
677,215 + Echvi_0600 0.57 -0.4
677,221 - Echvi_0600 0.58 -1.7
677,223 - Echvi_0600 0.58 -0.6
677,269 + Echvi_0600 0.63 -0.4
677,269 + Echvi_0600 0.63 -0.0
677,283 + Echvi_0600 0.65 -0.4
677,366 + Echvi_0600 0.74 +0.5
677,366 + Echvi_0600 0.74 +1.8
677,366 + Echvi_0600 0.74 -2.0
677,367 - Echvi_0600 0.74 -2.1
677,367 - Echvi_0600 0.74 -0.9
677,450 - Echvi_0600 0.83 -2.1
677,454 + Echvi_0600 0.84 +2.8
677,455 - Echvi_0600 0.84 +0.2
677,456 + Echvi_0600 0.84 -0.1
677,456 + Echvi_0600 0.84 +0.0
677,534 + -1.0
677,594 + -0.2
677,614 + -0.1
677,615 - +0.1
677,615 - -0.0
677,616 + +1.2
677,617 - +0.8
677,622 - +1.3
677,770 + -0.8
677,770 + -0.0
677,797 - -0.2
677,806 + -2.1
677,834 + -0.1
677,874 + Echvi_0601 0.12 +1.1
677,960 + Echvi_0601 0.21 +1.2
677,961 - Echvi_0601 0.21 +0.3
677,961 - Echvi_0601 0.21 -0.5
677,961 - Echvi_0601 0.21 -0.2
677,961 - Echvi_0601 0.21 +1.2
677,964 + Echvi_0601 0.22 +1.4
677,994 + Echvi_0601 0.25 -0.6
677,997 + Echvi_0601 0.25 +0.3
678,120 - Echvi_0601 0.38 +0.5
678,120 - Echvi_0601 0.38 -2.3
678,220 + Echvi_0601 0.48 -0.1
678,278 + Echvi_0601 0.54 -0.6
678,278 + Echvi_0601 0.54 +2.2
678,302 + Echvi_0601 0.57 -1.4
678,314 + Echvi_0601 0.58 -0.0
678,315 - Echvi_0601 0.58 -0.8
678,369 + Echvi_0601 0.64 +1.2
678,398 + Echvi_0601 0.67 -0.0
678,399 - Echvi_0601 0.67 -1.8
678,399 - Echvi_0601 0.67 -0.3
678,402 + Echvi_0601 0.67 +0.0
678,403 - Echvi_0601 0.68 +0.5
678,403 - Echvi_0601 0.68 -0.4
678,403 - Echvi_0601 0.68 +0.4
678,403 - Echvi_0601 0.68 +0.2
678,432 + Echvi_0601 0.71 -0.6
678,433 - Echvi_0601 0.71 -0.4
678,476 + Echvi_0601 0.75 -0.4
678,539 + Echvi_0601 0.82 +1.5
678,539 + Echvi_0601 0.82 -1.1
678,542 + Echvi_0601 0.82 +0.2
678,542 + Echvi_0601 0.82 +0.4
678,542 + Echvi_0601 0.82 +0.5
678,543 - Echvi_0601 0.82 -0.3
678,590 + Echvi_0601 0.87 +0.7
678,590 + Echvi_0601 0.87 +2.6
678,591 - Echvi_0601 0.87 +0.0

Or see this region's nucleotide sequence