Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0420

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0418 and Echvi_0419 are separated by 25 nucleotidesEchvi_0419 and Echvi_0420 are separated by 74 nucleotidesEchvi_0420 and Echvi_0421 are separated by 28 nucleotides Echvi_0418: Echvi_0418 - Deoxycytidylate deaminase, at 458,064 to 459,644 _0418 Echvi_0419: Echvi_0419 - hypothetical protein, at 459,670 to 459,798 _0419 Echvi_0420: Echvi_0420 - hypothetical protein, at 459,873 to 460,217 _0420 Echvi_0421: Echvi_0421 - hypothetical protein, at 460,246 to 464,346 _0421 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 458.873 kb on - strand, within Echvi_0418at 458.876 kb on + strand, within Echvi_0418at 458.877 kb on - strand, within Echvi_0418at 458.905 kb on + strand, within Echvi_0418at 458.905 kb on + strand, within Echvi_0418at 458.905 kb on + strand, within Echvi_0418at 458.917 kb on + strand, within Echvi_0418at 458.918 kb on - strand, within Echvi_0418at 458.998 kb on - strand, within Echvi_0418at 458.998 kb on - strand, within Echvi_0418at 458.998 kb on - strand, within Echvi_0418at 458.999 kb on + strand, within Echvi_0418at 459.015 kb on - strand, within Echvi_0418at 459.023 kb on + strand, within Echvi_0418at 459.023 kb on + strand, within Echvi_0418at 459.023 kb on + strand, within Echvi_0418at 459.024 kb on - strand, within Echvi_0418at 459.024 kb on - strand, within Echvi_0418at 459.024 kb on - strand, within Echvi_0418at 459.051 kb on - strand, within Echvi_0418at 459.099 kb on - strand, within Echvi_0418at 459.113 kb on - strand, within Echvi_0418at 459.126 kb on - strand, within Echvi_0418at 459.242 kb on + strand, within Echvi_0418at 459.243 kb on - strand, within Echvi_0418at 459.245 kb on + strand, within Echvi_0418at 459.245 kb on + strand, within Echvi_0418at 459.248 kb on + strand, within Echvi_0418at 459.249 kb on - strand, within Echvi_0418at 459.278 kb on + strand, within Echvi_0418at 459.278 kb on + strand, within Echvi_0418at 459.279 kb on - strand, within Echvi_0418at 459.279 kb on - strand, within Echvi_0418at 459.282 kb on + strand, within Echvi_0418at 459.283 kb on - strand, within Echvi_0418at 459.309 kb on - strand, within Echvi_0418at 459.309 kb on - strand, within Echvi_0418at 459.312 kb on - strand, within Echvi_0418at 459.337 kb on - strand, within Echvi_0418at 459.337 kb on - strand, within Echvi_0418at 459.340 kb on - strand, within Echvi_0418at 459.351 kb on + strand, within Echvi_0418at 459.351 kb on + strand, within Echvi_0418at 459.351 kb on + strand, within Echvi_0418at 459.351 kb on + strand, within Echvi_0418at 459.351 kb on + strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.352 kb on - strand, within Echvi_0418at 459.431 kb on - strand, within Echvi_0418at 459.435 kb on + strand, within Echvi_0418at 459.435 kb on + strand, within Echvi_0418at 459.436 kb on - strand, within Echvi_0418at 459.436 kb on - strand, within Echvi_0418at 459.446 kb on - strand, within Echvi_0418at 459.536 kb on - strandat 459.568 kb on + strandat 459.568 kb on + strandat 459.569 kb on - strandat 459.598 kb on + strandat 459.598 kb on + strandat 459.801 kb on + strandat 459.805 kb on + strandat 459.853 kb on + strandat 459.854 kb on - strandat 459.854 kb on - strandat 459.854 kb on - strandat 459.914 kb on + strand, within Echvi_0420at 459.916 kb on + strand, within Echvi_0420at 459.916 kb on + strand, within Echvi_0420at 459.917 kb on - strand, within Echvi_0420at 459.960 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.966 kb on + strand, within Echvi_0420at 459.967 kb on - strand, within Echvi_0420at 459.967 kb on - strand, within Echvi_0420at 459.967 kb on - strand, within Echvi_0420at 459.967 kb on - strand, within Echvi_0420at 459.969 kb on + strand, within Echvi_0420at 459.985 kb on - strand, within Echvi_0420at 459.985 kb on - strand, within Echvi_0420at 460.028 kb on - strand, within Echvi_0420at 460.038 kb on + strand, within Echvi_0420at 460.039 kb on - strand, within Echvi_0420at 460.039 kb on - strand, within Echvi_0420at 460.039 kb on - strand, within Echvi_0420at 460.058 kb on + strand, within Echvi_0420at 460.059 kb on - strand, within Echvi_0420at 460.062 kb on - strand, within Echvi_0420at 460.089 kb on - strand, within Echvi_0420at 460.188 kb on - strandat 460.189 kb on + strandat 460.199 kb on + strandat 460.201 kb on + strandat 460.201 kb on + strandat 460.202 kb on - strandat 460.202 kb on - strandat 460.202 kb on - strandat 460.237 kb on - strandat 460.245 kb on - strandat 460.247 kb on + strandat 460.247 kb on + strandat 460.265 kb on + strandat 460.326 kb on - strandat 460.376 kb on + strandat 460.376 kb on + strandat 460.376 kb on + strandat 460.396 kb on + strandat 460.396 kb on + strandat 460.397 kb on - strandat 460.401 kb on + strandat 460.419 kb on - strandat 460.419 kb on - strandat 460.419 kb on - strandat 460.423 kb on + strandat 460.424 kb on - strandat 460.463 kb on + strandat 460.496 kb on + strandat 460.531 kb on + strandat 460.600 kb on + strandat 460.663 kb on - strand, within Echvi_0421at 460.696 kb on + strand, within Echvi_0421at 460.783 kb on + strand, within Echvi_0421at 460.783 kb on + strand, within Echvi_0421at 460.784 kb on - strand, within Echvi_0421at 460.784 kb on - strand, within Echvi_0421at 460.835 kb on + strand, within Echvi_0421at 460.835 kb on + strand, within Echvi_0421at 460.839 kb on + strand, within Echvi_0421at 460.839 kb on + strand, within Echvi_0421at 460.839 kb on + strand, within Echvi_0421at 460.839 kb on + strand, within Echvi_0421at 460.839 kb on + strand, within Echvi_0421at 460.840 kb on - strand, within Echvi_0421at 460.840 kb on - strand, within Echvi_0421at 460.840 kb on - strand, within Echvi_0421at 460.840 kb on - strand, within Echvi_0421at 460.895 kb on - strand, within Echvi_0421at 460.895 kb on - strand, within Echvi_0421at 460.945 kb on - strand, within Echvi_0421at 460.984 kb on + strand, within Echvi_0421at 460.989 kb on + strand, within Echvi_0421at 461.039 kb on + strand, within Echvi_0421at 461.039 kb on + strand, within Echvi_0421at 461.049 kb on + strand, within Echvi_0421at 461.075 kb on - strand, within Echvi_0421at 461.080 kb on + strand, within Echvi_0421at 461.126 kb on - strand, within Echvi_0421at 461.132 kb on - strand, within Echvi_0421at 461.178 kb on - strand, within Echvi_0421at 461.182 kb on + strand, within Echvi_0421at 461.182 kb on + strand, within Echvi_0421at 461.183 kb on - strand, within Echvi_0421at 461.183 kb on - strand, within Echvi_0421at 461.183 kb on - strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.184 kb on + strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.185 kb on - strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.186 kb on + strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.187 kb on - strand, within Echvi_0421at 461.188 kb on + strand, within Echvi_0421at 461.188 kb on + strand, within Echvi_0421at 461.188 kb on + strand, within Echvi_0421at 461.188 kb on + strand, within Echvi_0421at 461.189 kb on - strand, within Echvi_0421at 461.189 kb on - strand, within Echvi_0421at 461.189 kb on - strand, within Echvi_0421at 461.194 kb on + strand, within Echvi_0421at 461.205 kb on - strand, within Echvi_0421at 461.208 kb on + strand, within Echvi_0421at 461.210 kb on + strand, within Echvi_0421at 461.210 kb on + strand, within Echvi_0421at 461.211 kb on - strand, within Echvi_0421at 461.217 kb on + strand, within Echvi_0421

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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458,873 - Echvi_0418 0.51 -0.2
458,876 + Echvi_0418 0.51 -0.9
458,877 - Echvi_0418 0.51 -0.8
458,905 + Echvi_0418 0.53 +0.4
458,905 + Echvi_0418 0.53 +0.3
458,905 + Echvi_0418 0.53 +1.0
458,917 + Echvi_0418 0.54 -0.0
458,918 - Echvi_0418 0.54 -1.7
458,998 - Echvi_0418 0.59 -0.2
458,998 - Echvi_0418 0.59 +0.5
458,998 - Echvi_0418 0.59 -0.8
458,999 + Echvi_0418 0.59 -0.8
459,015 - Echvi_0418 0.60 -1.8
459,023 + Echvi_0418 0.61 -0.4
459,023 + Echvi_0418 0.61 -0.2
459,023 + Echvi_0418 0.61 -0.8
459,024 - Echvi_0418 0.61 -0.7
459,024 - Echvi_0418 0.61 -0.6
459,024 - Echvi_0418 0.61 +1.2
459,051 - Echvi_0418 0.62 +2.0
459,099 - Echvi_0418 0.65 +1.6
459,113 - Echvi_0418 0.66 +0.0
459,126 - Echvi_0418 0.67 +1.8
459,242 + Echvi_0418 0.75 +0.5
459,243 - Echvi_0418 0.75 -0.8
459,245 + Echvi_0418 0.75 -0.2
459,245 + Echvi_0418 0.75 +0.8
459,248 + Echvi_0418 0.75 -0.3
459,249 - Echvi_0418 0.75 -0.9
459,278 + Echvi_0418 0.77 +0.2
459,278 + Echvi_0418 0.77 -1.4
459,279 - Echvi_0418 0.77 +0.3
459,279 - Echvi_0418 0.77 +2.3
459,282 + Echvi_0418 0.77 -0.3
459,283 - Echvi_0418 0.77 -0.0
459,309 - Echvi_0418 0.79 +0.5
459,309 - Echvi_0418 0.79 +0.6
459,312 - Echvi_0418 0.79 -0.6
459,337 - Echvi_0418 0.81 -0.8
459,337 - Echvi_0418 0.81 -0.0
459,340 - Echvi_0418 0.81 +0.9
459,351 + Echvi_0418 0.81 -1.1
459,351 + Echvi_0418 0.81 +0.1
459,351 + Echvi_0418 0.81 -0.5
459,351 + Echvi_0418 0.81 +2.4
459,351 + Echvi_0418 0.81 +0.9
459,352 - Echvi_0418 0.81 +0.2
459,352 - Echvi_0418 0.81 +0.2
459,352 - Echvi_0418 0.81 +1.0
459,352 - Echvi_0418 0.81 -0.7
459,352 - Echvi_0418 0.81 -0.6
459,352 - Echvi_0418 0.81 +0.0
459,431 - Echvi_0418 0.86 +1.0
459,435 + Echvi_0418 0.87 -0.5
459,435 + Echvi_0418 0.87 -0.4
459,436 - Echvi_0418 0.87 +0.8
459,436 - Echvi_0418 0.87 +0.2
459,446 - Echvi_0418 0.87 +0.2
459,536 - +0.1
459,568 + +0.3
459,568 + +0.2
459,569 - -1.1
459,598 + -0.2
459,598 + +0.3
459,801 + -0.6
459,805 + +0.0
459,853 + -0.5
459,854 - -0.8
459,854 - -0.9
459,854 - +0.0
459,914 + Echvi_0420 0.12 -0.5
459,916 + Echvi_0420 0.12 -0.1
459,916 + Echvi_0420 0.12 -1.0
459,917 - Echvi_0420 0.13 -0.5
459,960 + Echvi_0420 0.25 -0.1
459,966 + Echvi_0420 0.27 -1.0
459,966 + Echvi_0420 0.27 -0.2
459,966 + Echvi_0420 0.27 +0.5
459,966 + Echvi_0420 0.27 -0.2
459,966 + Echvi_0420 0.27 +0.2
459,966 + Echvi_0420 0.27 -0.8
459,967 - Echvi_0420 0.27 -0.8
459,967 - Echvi_0420 0.27 -1.4
459,967 - Echvi_0420 0.27 -1.2
459,967 - Echvi_0420 0.27 -0.5
459,969 + Echvi_0420 0.28 -0.6
459,985 - Echvi_0420 0.32 -0.1
459,985 - Echvi_0420 0.32 -0.5
460,028 - Echvi_0420 0.45 -0.7
460,038 + Echvi_0420 0.48 +0.9
460,039 - Echvi_0420 0.48 +0.1
460,039 - Echvi_0420 0.48 -0.5
460,039 - Echvi_0420 0.48 -0.3
460,058 + Echvi_0420 0.54 -1.0
460,059 - Echvi_0420 0.54 -0.4
460,062 - Echvi_0420 0.55 -0.2
460,089 - Echvi_0420 0.63 -1.4
460,188 - -2.3
460,189 + -0.0
460,199 + -0.0
460,201 + -0.0
460,201 + +0.0
460,202 - -1.8
460,202 - -0.8
460,202 - -0.8
460,237 - -0.7
460,245 - -1.6
460,247 + -1.9
460,247 + -0.8
460,265 + -1.1
460,326 - -0.7
460,376 + -1.0
460,376 + +2.0
460,376 + -0.3
460,396 + -0.3
460,396 + -0.2
460,397 - -0.7
460,401 + -0.2
460,419 - -1.4
460,419 - -1.3
460,419 - -0.1
460,423 + -0.7
460,424 - -0.9
460,463 + +0.2
460,496 + -0.3
460,531 + -0.2
460,600 + +0.1
460,663 - Echvi_0421 0.10 -1.6
460,696 + Echvi_0421 0.11 -0.2
460,783 + Echvi_0421 0.13 +0.2
460,783 + Echvi_0421 0.13 +0.8
460,784 - Echvi_0421 0.13 -0.9
460,784 - Echvi_0421 0.13 -0.7
460,835 + Echvi_0421 0.14 -1.0
460,835 + Echvi_0421 0.14 -0.1
460,839 + Echvi_0421 0.14 +1.3
460,839 + Echvi_0421 0.14 -0.8
460,839 + Echvi_0421 0.14 -0.2
460,839 + Echvi_0421 0.14 -0.4
460,839 + Echvi_0421 0.14 -0.5
460,840 - Echvi_0421 0.14 +0.2
460,840 - Echvi_0421 0.14 -0.3
460,840 - Echvi_0421 0.14 -0.8
460,840 - Echvi_0421 0.14 +0.4
460,895 - Echvi_0421 0.16 -0.2
460,895 - Echvi_0421 0.16 +1.4
460,945 - Echvi_0421 0.17 +0.2
460,984 + Echvi_0421 0.18 -0.7
460,989 + Echvi_0421 0.18 -0.2
461,039 + Echvi_0421 0.19 +1.1
461,039 + Echvi_0421 0.19 +0.3
461,049 + Echvi_0421 0.20 +0.1
461,075 - Echvi_0421 0.20 +0.6
461,080 + Echvi_0421 0.20 +0.4
461,126 - Echvi_0421 0.21 +0.2
461,132 - Echvi_0421 0.22 -0.0
461,178 - Echvi_0421 0.23 +0.2
461,182 + Echvi_0421 0.23 -0.7
461,182 + Echvi_0421 0.23 -0.5
461,183 - Echvi_0421 0.23 -3.0
461,183 - Echvi_0421 0.23 +1.5
461,183 - Echvi_0421 0.23 -0.1
461,184 + Echvi_0421 0.23 -0.7
461,184 + Echvi_0421 0.23 -0.1
461,184 + Echvi_0421 0.23 -0.4
461,184 + Echvi_0421 0.23 +0.6
461,184 + Echvi_0421 0.23 +1.2
461,184 + Echvi_0421 0.23 -0.0
461,184 + Echvi_0421 0.23 -0.4
461,184 + Echvi_0421 0.23 +0.1
461,184 + Echvi_0421 0.23 +0.1
461,184 + Echvi_0421 0.23 +0.4
461,184 + Echvi_0421 0.23 -0.3
461,185 - Echvi_0421 0.23 -0.5
461,185 - Echvi_0421 0.23 -2.1
461,185 - Echvi_0421 0.23 +1.8
461,185 - Echvi_0421 0.23 +0.2
461,185 - Echvi_0421 0.23 -0.6
461,185 - Echvi_0421 0.23 +0.2
461,185 - Echvi_0421 0.23 -0.1
461,185 - Echvi_0421 0.23 +0.8
461,185 - Echvi_0421 0.23 -0.7
461,186 + Echvi_0421 0.23 -0.4
461,186 + Echvi_0421 0.23 -0.6
461,186 + Echvi_0421 0.23 -0.0
461,186 + Echvi_0421 0.23 -0.7
461,186 + Echvi_0421 0.23 +0.4
461,186 + Echvi_0421 0.23 +1.1
461,186 + Echvi_0421 0.23 -0.4
461,186 + Echvi_0421 0.23 +0.9
461,187 - Echvi_0421 0.23 +1.2
461,187 - Echvi_0421 0.23 -0.7
461,187 - Echvi_0421 0.23 -1.0
461,187 - Echvi_0421 0.23 +0.8
461,187 - Echvi_0421 0.23 -0.2
461,187 - Echvi_0421 0.23 +0.1
461,187 - Echvi_0421 0.23 +0.1
461,188 + Echvi_0421 0.23 +0.8
461,188 + Echvi_0421 0.23 -0.5
461,188 + Echvi_0421 0.23 +0.7
461,188 + Echvi_0421 0.23 +0.4
461,189 - Echvi_0421 0.23 +0.0
461,189 - Echvi_0421 0.23 -1.2
461,189 - Echvi_0421 0.23 -0.9
461,194 + Echvi_0421 0.23 -0.7
461,205 - Echvi_0421 0.23 -0.2
461,208 + Echvi_0421 0.23 +1.3
461,210 + Echvi_0421 0.24 -0.3
461,210 + Echvi_0421 0.24 +0.7
461,211 - Echvi_0421 0.24 +0.8
461,217 + Echvi_0421 0.24 -0.0

Or see this region's nucleotide sequence