Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0376 and Echvi_0377 are separated by 63 nucleotides Echvi_0377 and Echvi_0378 are separated by 67 nucleotides Echvi_0378 and Echvi_0379 are separated by 166 nucleotides
Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862
_0376
Echvi_0377: Echvi_0377 - hypothetical protein, at 403,926 to 404,474
_0377
Echvi_0378: Echvi_0378 - hypothetical protein, at 404,542 to 404,688
_0378
Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087
_0379
Position (kb) 404
405 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 403.553 kb on - strand, within Echvi_0376 at 403.591 kb on + strand, within Echvi_0376 at 403.653 kb on + strand, within Echvi_0376 at 403.666 kb on + strand, within Echvi_0376 at 403.671 kb on - strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.674 kb on + strand, within Echvi_0376 at 403.675 kb on - strand at 403.676 kb on + strand, within Echvi_0376 at 403.676 kb on + strand, within Echvi_0376 at 403.679 kb on + strand, within Echvi_0376 at 403.757 kb on + strand, within Echvi_0376 at 403.786 kb on + strand, within Echvi_0376 at 403.786 kb on + strand, within Echvi_0376 at 403.787 kb on - strand, within Echvi_0376 at 403.823 kb on + strand at 403.824 kb on - strand at 403.862 kb on + strand at 403.862 kb on + strand at 403.882 kb on + strand at 403.883 kb on - strand at 403.883 kb on - strand at 403.944 kb on - strand at 404.000 kb on + strand, within Echvi_0377 at 404.001 kb on - strand, within Echvi_0377 at 404.001 kb on - strand, within Echvi_0377 at 404.004 kb on + strand, within Echvi_0377 at 404.004 kb on + strand, within Echvi_0377 at 404.004 kb on + strand, within Echvi_0377 at 404.005 kb on - strand, within Echvi_0377 at 404.069 kb on + strand, within Echvi_0377 at 404.069 kb on + strand, within Echvi_0377 at 404.079 kb on + strand, within Echvi_0377 at 404.080 kb on - strand, within Echvi_0377 at 404.105 kb on + strand, within Echvi_0377 at 404.127 kb on + strand, within Echvi_0377 at 404.127 kb on + strand, within Echvi_0377 at 404.189 kb on + strand, within Echvi_0377 at 404.190 kb on - strand, within Echvi_0377 at 404.209 kb on + strand, within Echvi_0377 at 404.210 kb on - strand, within Echvi_0377 at 404.348 kb on + strand, within Echvi_0377 at 404.348 kb on + strand, within Echvi_0377 at 404.360 kb on + strand, within Echvi_0377 at 404.360 kb on + strand, within Echvi_0377 at 404.381 kb on + strand, within Echvi_0377 at 404.381 kb on + strand, within Echvi_0377 at 404.381 kb on + strand, within Echvi_0377 at 404.426 kb on - strand at 404.429 kb on + strand at 404.433 kb on + strand at 404.433 kb on + strand at 404.487 kb on + strand at 404.493 kb on + strand at 404.493 kb on + strand at 404.523 kb on + strand at 404.618 kb on + strand, within Echvi_0378 at 404.619 kb on - strand, within Echvi_0378 at 404.619 kb on - strand, within Echvi_0378 at 404.621 kb on + strand, within Echvi_0378 at 404.622 kb on - strand, within Echvi_0378 at 404.622 kb on - strand, within Echvi_0378 at 404.674 kb on - strand at 404.674 kb on - strand at 404.676 kb on - strand at 404.676 kb on - strand at 404.679 kb on - strand at 404.687 kb on - strand at 404.704 kb on + strand at 404.750 kb on - strand at 404.803 kb on - strand at 404.803 kb on - strand at 404.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 403,553 - Echvi_0376 0.45 -0.8 403,591 + Echvi_0376 0.52 -1.0 403,653 + Echvi_0376 0.63 -0.9 403,666 + Echvi_0376 0.65 +1.2 403,671 - Echvi_0376 0.66 -0.5 403,674 + Echvi_0376 0.66 -1.4 403,674 + Echvi_0376 0.66 +0.8 403,674 + Echvi_0376 0.66 -0.1 403,674 + Echvi_0376 0.66 -1.8 403,674 + Echvi_0376 0.66 -0.4 403,675 - -0.2 403,676 + Echvi_0376 0.67 -0.1 403,676 + Echvi_0376 0.67 +0.2 403,679 + Echvi_0376 0.67 +1.2 403,757 + Echvi_0376 0.81 -0.8 403,786 + Echvi_0376 0.86 +1.5 403,786 + Echvi_0376 0.86 -1.4 403,787 - Echvi_0376 0.87 -1.4 403,823 + -0.2 403,824 - -0.8 403,862 + +0.3 403,862 + -0.4 403,882 + -0.2 403,883 - -0.6 403,883 - -1.6 403,944 - -0.9 404,000 + Echvi_0377 0.13 +0.2 404,001 - Echvi_0377 0.14 -0.8 404,001 - Echvi_0377 0.14 -0.9 404,004 + Echvi_0377 0.14 +0.7 404,004 + Echvi_0377 0.14 +0.1 404,004 + Echvi_0377 0.14 +0.7 404,005 - Echvi_0377 0.14 -0.6 404,069 + Echvi_0377 0.26 +0.5 404,069 + Echvi_0377 0.26 +0.4 404,079 + Echvi_0377 0.28 +0.4 404,080 - Echvi_0377 0.28 +0.2 404,105 + Echvi_0377 0.33 -1.3 404,127 + Echvi_0377 0.37 +0.2 404,127 + Echvi_0377 0.37 -0.6 404,189 + Echvi_0377 0.48 -0.2 404,190 - Echvi_0377 0.48 -0.8 404,209 + Echvi_0377 0.52 -1.5 404,210 - Echvi_0377 0.52 -1.9 404,348 + Echvi_0377 0.77 +0.1 404,348 + Echvi_0377 0.77 +0.7 404,360 + Echvi_0377 0.79 -0.7 404,360 + Echvi_0377 0.79 -0.4 404,381 + Echvi_0377 0.83 -1.5 404,381 + Echvi_0377 0.83 -0.2 404,381 + Echvi_0377 0.83 +0.3 404,426 - -0.2 404,429 + -0.6 404,433 + -0.3 404,433 + +0.5 404,487 + -0.2 404,493 + -0.4 404,493 + +0.5 404,523 + -0.2 404,618 + Echvi_0378 0.52 -0.5 404,619 - Echvi_0378 0.52 -0.2 404,619 - Echvi_0378 0.52 -1.5 404,621 + Echvi_0378 0.54 -0.3 404,622 - Echvi_0378 0.54 -1.1 404,622 - Echvi_0378 0.54 -2.2 404,674 - -1.9 404,674 - -1.5 404,676 - +2.8 404,676 - -2.2 404,679 - -2.3 404,687 - -1.8 404,704 + +0.7 404,750 - -1.2 404,803 - -0.0 404,803 - +0.8 404,807 - -0.9
Or see this region's nucleotide sequence