Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0332

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0331 and Echvi_0332 are separated by 386 nucleotidesEchvi_0332 and Echvi_0333 are separated by 12 nucleotides Echvi_0331: Echvi_0331 - Uncharacterized conserved protein, at 347,371 to 348,957 _0331 Echvi_0332: Echvi_0332 - Zn-dependent protease with chaperone function, at 349,344 to 350,576 _0332 Echvi_0333: Echvi_0333 - Bacteroidetes-specific putative membrane protein, at 350,589 to 351,638 _0333 Position (kb) 349 350 351Strain fitness (log2 ratio) -1 0 1 2at 348.568 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.740 kb on + strand, within Echvi_0331at 348.741 kb on - strand, within Echvi_0331at 348.882 kb on + strandat 348.882 kb on + strandat 348.883 kb on - strandat 348.888 kb on + strandat 348.934 kb on + strandat 348.935 kb on - strandat 348.938 kb on - strandat 348.953 kb on - strandat 348.958 kb on - strandat 348.976 kb on + strandat 348.976 kb on + strandat 348.984 kb on + strandat 349.038 kb on + strandat 349.084 kb on - strandat 349.134 kb on + strandat 349.135 kb on - strandat 349.140 kb on - strandat 349.231 kb on + strandat 349.231 kb on + strandat 349.237 kb on + strandat 349.238 kb on - strandat 349.273 kb on + strandat 349.274 kb on - strandat 349.306 kb on + strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.345 kb on + strandat 349.346 kb on - strandat 349.483 kb on + strand, within Echvi_0332at 349.499 kb on - strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.722 kb on - strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.800 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.921 kb on + strand, within Echvi_0332at 349.971 kb on - strand, within Echvi_0332at 350.021 kb on + strand, within Echvi_0332at 350.131 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.207 kb on + strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.208 kb on - strand, within Echvi_0332at 350.413 kb on + strand, within Echvi_0332at 350.414 kb on - strand, within Echvi_0332at 350.513 kb on + strandat 350.555 kb on - strandat 350.587 kb on + strandat 350.615 kb on + strandat 350.615 kb on + strandat 350.616 kb on - strandat 350.716 kb on + strand, within Echvi_0333at 350.716 kb on + strand, within Echvi_0333at 350.717 kb on - strand, within Echvi_0333at 350.812 kb on + strand, within Echvi_0333at 350.812 kb on + strand, within Echvi_0333at 350.813 kb on - strand, within Echvi_0333at 350.857 kb on + strand, within Echvi_0333at 350.857 kb on + strand, within Echvi_0333at 350.858 kb on - strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.863 kb on + strand, within Echvi_0333at 350.864 kb on - strand, within Echvi_0333at 350.864 kb on - strand, within Echvi_0333at 350.903 kb on + strand, within Echvi_0333at 350.903 kb on + strand, within Echvi_0333at 350.905 kb on + strand, within Echvi_0333at 350.905 kb on + strand, within Echvi_0333at 350.939 kb on - strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.942 kb on + strand, within Echvi_0333at 350.943 kb on - strand, within Echvi_0333at 350.943 kb on - strand, within Echvi_0333at 350.977 kb on - strand, within Echvi_0333at 351.061 kb on - strand, within Echvi_0333at 351.062 kb on + strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.165 kb on - strand, within Echvi_0333at 351.236 kb on - strand, within Echvi_0333at 351.236 kb on - strand, within Echvi_0333at 351.256 kb on + strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.257 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.261 kb on - strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.310 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strandat 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.316 kb on + strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.317 kb on - strand, within Echvi_0333at 351.360 kb on + strand, within Echvi_0333at 351.360 kb on + strand, within Echvi_0333at 351.361 kb on - strand, within Echvi_0333at 351.361 kb on - strand, within Echvi_0333at 351.395 kb on + strand, within Echvi_0333at 351.396 kb on - strand, within Echvi_0333at 351.398 kb on - strand, within Echvi_0333at 351.414 kb on - strand, within Echvi_0333at 351.435 kb on - strand, within Echvi_0333at 351.435 kb on - strand, within Echvi_0333at 351.439 kb on + strand, within Echvi_0333at 351.440 kb on - strand, within Echvi_0333at 351.440 kb on - strand, within Echvi_0333at 351.468 kb on - strand, within Echvi_0333at 351.484 kb on - strand, within Echvi_0333at 351.495 kb on + strand, within Echvi_0333at 351.496 kb on - strand, within Echvi_0333at 351.544 kb on + strandat 351.544 kb on + strandat 351.545 kb on - strandat 351.545 kb on - strandat 351.545 kb on - strandat 351.553 kb on + strandat 351.553 kb on + strandat 351.576 kb on - strandat 351.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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348,568 - Echvi_0331 0.75 +0.4
348,588 - Echvi_0331 0.77 -0.8
348,588 - Echvi_0331 0.77 -0.4
348,687 + Echvi_0331 0.83 -0.5
348,687 + Echvi_0331 0.83 -0.1
348,688 - Echvi_0331 0.83 -0.6
348,688 - Echvi_0331 0.83 +0.2
348,688 - Echvi_0331 0.83 -0.3
348,740 + Echvi_0331 0.86 +0.3
348,741 - Echvi_0331 0.86 -1.6
348,882 + -0.3
348,882 + +1.1
348,883 - +0.4
348,888 + -1.4
348,934 + -0.5
348,935 - +0.3
348,938 - +1.1
348,953 - +0.9
348,958 - -0.4
348,976 + -1.0
348,976 + +0.6
348,984 + -0.6
349,038 + +0.4
349,084 - +0.1
349,134 + -0.3
349,135 - -1.1
349,140 - -0.2
349,231 + -0.6
349,231 + +1.7
349,237 + +0.4
349,238 - +0.9
349,273 + +0.0
349,274 - +1.2
349,306 + -0.4
349,307 - +0.1
349,307 - -0.3
349,307 - -1.7
349,345 + +0.3
349,346 - +0.5
349,483 + Echvi_0332 0.11 -0.4
349,499 - Echvi_0332 0.13 +0.9
349,581 + Echvi_0332 0.19 -1.2
349,581 + Echvi_0332 0.19 -1.0
349,582 - Echvi_0332 0.19 +1.7
349,582 - Echvi_0332 0.19 +2.3
349,722 - Echvi_0332 0.31 -0.0
349,733 + Echvi_0332 0.32 -1.7
349,733 + Echvi_0332 0.32 +0.7
349,734 - Echvi_0332 0.32 -1.0
349,734 - Echvi_0332 0.32 -0.8
349,734 - Echvi_0332 0.32 -0.1
349,734 - Echvi_0332 0.32 +0.4
349,734 - Echvi_0332 0.32 -0.1
349,736 - Echvi_0332 0.32 +1.0
349,736 - Echvi_0332 0.32 -0.5
349,781 + Echvi_0332 0.35 -0.4
349,781 + Echvi_0332 0.35 -0.2
349,781 + Echvi_0332 0.35 +0.3
349,782 - Echvi_0332 0.36 +0.3
349,782 - Echvi_0332 0.36 +0.0
349,782 - Echvi_0332 0.36 +0.9
349,782 - Echvi_0332 0.36 +1.0
349,782 - Echvi_0332 0.36 +0.0
349,800 - Echvi_0332 0.37 -0.9
349,805 - Echvi_0332 0.37 +0.4
349,805 - Echvi_0332 0.37 -0.7
349,921 + Echvi_0332 0.47 -0.0
349,971 - Echvi_0332 0.51 -1.7
350,021 + Echvi_0332 0.55 +0.5
350,131 + Echvi_0332 0.64 -0.3
350,207 + Echvi_0332 0.70 +0.1
350,207 + Echvi_0332 0.70 -0.4
350,207 + Echvi_0332 0.70 +0.6
350,208 - Echvi_0332 0.70 +0.1
350,208 - Echvi_0332 0.70 +0.5
350,208 - Echvi_0332 0.70 +0.1
350,208 - Echvi_0332 0.70 -0.6
350,413 + Echvi_0332 0.87 -0.6
350,414 - Echvi_0332 0.87 +1.4
350,513 + +0.5
350,555 - -0.3
350,587 + -0.0
350,615 + +0.6
350,615 + +0.8
350,616 - +0.1
350,716 + Echvi_0333 0.12 +0.3
350,716 + Echvi_0333 0.12 +0.9
350,717 - Echvi_0333 0.12 +0.2
350,812 + Echvi_0333 0.21 +1.3
350,812 + Echvi_0333 0.21 +0.8
350,813 - Echvi_0333 0.21 +0.8
350,857 + Echvi_0333 0.26 -0.1
350,857 + Echvi_0333 0.26 +0.2
350,858 - Echvi_0333 0.26 -0.1
350,863 + Echvi_0333 0.26 +0.2
350,863 + Echvi_0333 0.26 +0.6
350,863 + Echvi_0333 0.26 +0.6
350,863 + Echvi_0333 0.26 -0.3
350,864 - Echvi_0333 0.26 +0.2
350,864 - Echvi_0333 0.26 +1.2
350,903 + Echvi_0333 0.30 +0.8
350,903 + Echvi_0333 0.30 -0.1
350,905 + Echvi_0333 0.30 +0.4
350,905 + Echvi_0333 0.30 +0.6
350,939 - Echvi_0333 0.33 +0.8
350,942 + Echvi_0333 0.34 +0.7
350,942 + Echvi_0333 0.34 +0.8
350,942 + Echvi_0333 0.34 +0.2
350,942 + Echvi_0333 0.34 +1.1
350,943 - Echvi_0333 0.34 +0.2
350,943 - Echvi_0333 0.34 +1.0
350,977 - Echvi_0333 0.37 +0.9
351,061 - Echvi_0333 0.45 +0.3
351,062 + Echvi_0333 0.45 -0.0
351,165 - Echvi_0333 0.55 +1.0
351,165 - Echvi_0333 0.55 +0.7
351,165 - Echvi_0333 0.55 +0.5
351,236 - Echvi_0333 0.62 -0.0
351,236 - Echvi_0333 0.62 +0.5
351,256 + Echvi_0333 0.64 +1.0
351,257 - Echvi_0333 0.64 +0.9
351,257 - Echvi_0333 0.64 +1.3
351,257 - Echvi_0333 0.64 +0.1
351,261 - Echvi_0333 0.64 +1.0
351,261 - Echvi_0333 0.64 +0.1
351,261 - Echvi_0333 0.64 +1.2
351,261 - Echvi_0333 0.64 -0.3
351,310 + Echvi_0333 0.69 -0.1
351,310 + Echvi_0333 0.69 +0.4
351,310 + Echvi_0333 0.69 +0.9
351,316 + Echvi_0333 0.69 +0.4
351,316 + Echvi_0333 0.69 +0.8
351,316 + Echvi_0333 0.69 +0.9
351,316 + Echvi_0333 0.69 +2.3
351,316 + Echvi_0333 0.69 -0.0
351,316 + Echvi_0333 0.69 +0.6
351,316 + Echvi_0333 0.69 +0.8
351,316 + Echvi_0333 0.69 -0.4
351,316 + +1.7
351,316 + Echvi_0333 0.69 +0.7
351,316 + Echvi_0333 0.69 -0.2
351,316 + Echvi_0333 0.69 +0.6
351,316 + Echvi_0333 0.69 -0.5
351,316 + Echvi_0333 0.69 +0.8
351,316 + Echvi_0333 0.69 +0.6
351,316 + Echvi_0333 0.69 +0.4
351,317 - Echvi_0333 0.69 +1.7
351,317 - Echvi_0333 0.69 +0.3
351,317 - Echvi_0333 0.69 +0.8
351,317 - Echvi_0333 0.69 +0.6
351,317 - Echvi_0333 0.69 +0.3
351,317 - Echvi_0333 0.69 +0.5
351,317 - Echvi_0333 0.69 -1.4
351,317 - Echvi_0333 0.69 +1.3
351,317 - Echvi_0333 0.69 +0.3
351,317 - Echvi_0333 0.69 +0.6
351,317 - Echvi_0333 0.69 +0.8
351,317 - Echvi_0333 0.69 +0.4
351,317 - Echvi_0333 0.69 +1.6
351,360 + Echvi_0333 0.73 +0.3
351,360 + Echvi_0333 0.73 +0.8
351,361 - Echvi_0333 0.74 +0.5
351,361 - Echvi_0333 0.74 +1.0
351,395 + Echvi_0333 0.77 +0.2
351,396 - Echvi_0333 0.77 +0.6
351,398 - Echvi_0333 0.77 -0.1
351,414 - Echvi_0333 0.79 +2.3
351,435 - Echvi_0333 0.81 -0.1
351,435 - Echvi_0333 0.81 +0.6
351,439 + Echvi_0333 0.81 +0.9
351,440 - Echvi_0333 0.81 +0.7
351,440 - Echvi_0333 0.81 +0.9
351,468 - Echvi_0333 0.84 +0.8
351,484 - Echvi_0333 0.85 +1.2
351,495 + Echvi_0333 0.86 +0.8
351,496 - Echvi_0333 0.86 +0.3
351,544 + +1.3
351,544 + +1.2
351,545 - +1.1
351,545 - +0.5
351,545 - +0.4
351,553 + +1.7
351,553 + +0.2
351,576 - +1.1
351,576 - +0.4

Or see this region's nucleotide sequence