Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0226

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0225 and Echvi_0226 are separated by 25 nucleotidesEchvi_0226 and Echvi_0227 are separated by 130 nucleotidesEchvi_0227 and Echvi_0228 are separated by 6 nucleotides Echvi_0225: Echvi_0225 - phosphopyruvate hydratase, at 242,162 to 243,439 _0225 Echvi_0226: Echvi_0226 - carbamoyl-phosphate synthase, small subunit, at 243,465 to 244,559 _0226 Echvi_0227: Echvi_0227 - ribosomal protein L17, at 244,690 to 245,313 _0227 Echvi_0228: Echvi_0228 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 245,320 to 246,309 _0228 Position (kb) 243 244 245Strain fitness (log2 ratio) -1 0 1 2at 243.457 kb on - strandat 243.457 kb on - strandat 243.457 kb on - strandat 243.457 kb on - strandat 243.467 kb on - strandat 243.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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243,457 - -0.1
243,457 - +2.0
243,457 - -1.0
243,457 - +1.4
243,467 - +0.5
243,471 - +0.9

Or see this region's nucleotide sequence