Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0168

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0167 and Echvi_0168 are separated by 60 nucleotidesEchvi_0168 and Echvi_0169 overlap by 11 nucleotidesEchvi_0169 and Echvi_0170 are separated by 1 nucleotides Echvi_0167: Echvi_0167 - phosphoribosylamine--glycine ligase, at 171,641 to 172,933 _0167 Echvi_0168: Echvi_0168 - Uncharacterized homolog of PSP1, at 172,994 to 174,391 _0168 Echvi_0169: Echvi_0169 - hypothetical protein, at 174,381 to 174,863 _0169 Echvi_0170: Echvi_0170 - hypothetical protein, at 174,865 to 178,857 _0170 Position (kb) 172 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 172.932 kb on - strandat 172.961 kb on + strandat 172.981 kb on + strandat 172.981 kb on + strandat 172.984 kb on + strandat 172.984 kb on + strandat 172.984 kb on + strandat 172.985 kb on - strandat 172.986 kb on + strandat 172.986 kb on + strandat 172.986 kb on + strandat 173.005 kb on + strandat 173.005 kb on + strandat 173.256 kb on - strand, within Echvi_0168at 173.281 kb on - strand, within Echvi_0168at 173.321 kb on - strand, within Echvi_0168at 173.651 kb on - strand, within Echvi_0168at 174.404 kb on - strandat 174.461 kb on + strand, within Echvi_0169at 174.461 kb on + strand, within Echvi_0169at 174.461 kb on + strand, within Echvi_0169at 174.461 kb on + strand, within Echvi_0169at 174.462 kb on - strand, within Echvi_0169at 174.462 kb on - strand, within Echvi_0169at 174.462 kb on - strand, within Echvi_0169at 174.462 kb on - strand, within Echvi_0169at 174.462 kb on - strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.463 kb on + strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.464 kb on - strand, within Echvi_0169at 174.465 kb on + strand, within Echvi_0169at 174.465 kb on + strand, within Echvi_0169at 174.465 kb on + strand, within Echvi_0169at 174.465 kb on + strand, within Echvi_0169at 174.466 kb on - strand, within Echvi_0169at 174.474 kb on + strand, within Echvi_0169at 174.474 kb on + strand, within Echvi_0169at 174.475 kb on - strand, within Echvi_0169at 174.504 kb on - strand, within Echvi_0169at 174.540 kb on + strand, within Echvi_0169at 174.540 kb on + strand, within Echvi_0169at 174.541 kb on - strand, within Echvi_0169at 174.556 kb on + strand, within Echvi_0169at 174.594 kb on + strand, within Echvi_0169at 174.597 kb on + strand, within Echvi_0169at 174.597 kb on + strand, within Echvi_0169at 174.597 kb on + strand, within Echvi_0169at 174.597 kb on + strand, within Echvi_0169at 174.597 kb on + strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.598 kb on - strand, within Echvi_0169at 174.599 kb on + strand, within Echvi_0169at 174.599 kb on + strand, within Echvi_0169at 174.599 kb on + strand, within Echvi_0169at 174.599 kb on + strand, within Echvi_0169at 174.599 kb on + strand, within Echvi_0169at 174.606 kb on + strand, within Echvi_0169at 174.607 kb on - strand, within Echvi_0169at 174.610 kb on + strand, within Echvi_0169at 174.610 kb on + strand, within Echvi_0169at 174.611 kb on - strand, within Echvi_0169at 174.615 kb on + strand, within Echvi_0169at 174.616 kb on - strand, within Echvi_0169at 174.616 kb on - strand, within Echvi_0169at 174.669 kb on - strand, within Echvi_0169at 174.673 kb on + strand, within Echvi_0169at 174.673 kb on + strand, within Echvi_0169at 174.673 kb on + strand, within Echvi_0169at 174.719 kb on + strand, within Echvi_0169at 174.719 kb on + strand, within Echvi_0169at 174.720 kb on - strand, within Echvi_0169at 174.720 kb on - strand, within Echvi_0169at 174.795 kb on + strand, within Echvi_0169at 174.796 kb on - strand, within Echvi_0169at 174.803 kb on + strand, within Echvi_0169at 174.803 kb on + strand, within Echvi_0169at 174.804 kb on - strand, within Echvi_0169at 174.833 kb on - strandat 174.862 kb on - strandat 174.862 kb on - strandat 174.894 kb on + strandat 174.941 kb on - strandat 174.948 kb on + strandat 174.949 kb on - strandat 174.949 kb on - strandat 174.986 kb on + strandat 174.986 kb on + strandat 174.988 kb on + strandat 174.988 kb on + strandat 174.988 kb on + strandat 175.055 kb on + strandat 175.066 kb on + strandat 175.067 kb on - strandat 175.067 kb on - strandat 175.067 kb on - strandat 175.086 kb on + strandat 175.086 kb on + strandat 175.105 kb on - strandat 175.127 kb on + strandat 175.239 kb on - strandat 175.268 kb on + strand, within Echvi_0170at 175.268 kb on + strand, within Echvi_0170at 175.305 kb on + strand, within Echvi_0170at 175.318 kb on + strand, within Echvi_0170at 175.318 kb on + strand, within Echvi_0170at 175.318 kb on + strand, within Echvi_0170at 175.318 kb on + strand, within Echvi_0170at 175.319 kb on - strand, within Echvi_0170at 175.319 kb on - strand, within Echvi_0170at 175.351 kb on + strand, within Echvi_0170at 175.360 kb on + strand, within Echvi_0170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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172,932 - +0.7
172,961 + +0.3
172,981 + +0.3
172,981 + +0.2
172,984 + -0.6
172,984 + -0.4
172,984 + +0.4
172,985 - -1.8
172,986 + -1.6
172,986 + -2.1
172,986 + -2.0
173,005 + -0.1
173,005 + +0.1
173,256 - Echvi_0168 0.19 +0.3
173,281 - Echvi_0168 0.21 -2.8
173,321 - Echvi_0168 0.23 -1.4
173,651 - Echvi_0168 0.47 +0.4
174,404 - +0.1
174,461 + Echvi_0169 0.17 +0.5
174,461 + Echvi_0169 0.17 +0.9
174,461 + Echvi_0169 0.17 +1.3
174,461 + Echvi_0169 0.17 +0.5
174,462 - Echvi_0169 0.17 +0.7
174,462 - Echvi_0169 0.17 +1.9
174,462 - Echvi_0169 0.17 +0.5
174,462 - Echvi_0169 0.17 +0.7
174,462 - Echvi_0169 0.17 +1.1
174,463 + Echvi_0169 0.17 +0.4
174,463 + Echvi_0169 0.17 +0.6
174,463 + Echvi_0169 0.17 +0.4
174,463 + Echvi_0169 0.17 +0.3
174,463 + Echvi_0169 0.17 +1.5
174,463 + Echvi_0169 0.17 +1.0
174,463 + Echvi_0169 0.17 +1.0
174,464 - Echvi_0169 0.17 +0.4
174,464 - Echvi_0169 0.17 +0.9
174,464 - Echvi_0169 0.17 +0.7
174,464 - Echvi_0169 0.17 +0.8
174,464 - Echvi_0169 0.17 +1.0
174,464 - Echvi_0169 0.17 +0.7
174,464 - Echvi_0169 0.17 +0.9
174,464 - Echvi_0169 0.17 +0.6
174,464 - Echvi_0169 0.17 +0.7
174,465 + Echvi_0169 0.17 +0.9
174,465 + Echvi_0169 0.17 +0.6
174,465 + Echvi_0169 0.17 +1.2
174,465 + Echvi_0169 0.17 +0.9
174,466 - Echvi_0169 0.18 +1.2
174,474 + Echvi_0169 0.19 +1.2
174,474 + Echvi_0169 0.19 +0.6
174,475 - Echvi_0169 0.19 +0.8
174,504 - Echvi_0169 0.25 +0.8
174,540 + Echvi_0169 0.33 +0.7
174,540 + Echvi_0169 0.33 +0.4
174,541 - Echvi_0169 0.33 +0.1
174,556 + Echvi_0169 0.36 +1.5
174,594 + Echvi_0169 0.44 +0.0
174,597 + Echvi_0169 0.45 +0.2
174,597 + Echvi_0169 0.45 +0.5
174,597 + Echvi_0169 0.45 +0.8
174,597 + Echvi_0169 0.45 +0.1
174,597 + Echvi_0169 0.45 +0.3
174,598 - Echvi_0169 0.45 +1.0
174,598 - Echvi_0169 0.45 +1.1
174,598 - Echvi_0169 0.45 +1.1
174,598 - Echvi_0169 0.45 +1.0
174,598 - Echvi_0169 0.45 +1.5
174,598 - Echvi_0169 0.45 +1.3
174,598 - Echvi_0169 0.45 +1.3
174,598 - Echvi_0169 0.45 +0.6
174,599 + Echvi_0169 0.45 -0.9
174,599 + Echvi_0169 0.45 +2.1
174,599 + Echvi_0169 0.45 +0.9
174,599 + Echvi_0169 0.45 +0.8
174,599 + Echvi_0169 0.45 +0.5
174,606 + Echvi_0169 0.47 +2.0
174,607 - Echvi_0169 0.47 -1.9
174,610 + Echvi_0169 0.47 +0.6
174,610 + Echvi_0169 0.47 -0.3
174,611 - Echvi_0169 0.48 +1.4
174,615 + Echvi_0169 0.48 +0.2
174,616 - Echvi_0169 0.49 +0.9
174,616 - Echvi_0169 0.49 +0.9
174,669 - Echvi_0169 0.60 +0.9
174,673 + Echvi_0169 0.60 +1.4
174,673 + Echvi_0169 0.60 +2.1
174,673 + Echvi_0169 0.60 +0.9
174,719 + Echvi_0169 0.70 +0.6
174,719 + Echvi_0169 0.70 +0.0
174,720 - Echvi_0169 0.70 +1.7
174,720 - Echvi_0169 0.70 +1.0
174,795 + Echvi_0169 0.86 +0.7
174,796 - Echvi_0169 0.86 +1.0
174,803 + Echvi_0169 0.87 +0.2
174,803 + Echvi_0169 0.87 +0.9
174,804 - Echvi_0169 0.88 +0.7
174,833 - +1.0
174,862 - -0.2
174,862 - +1.0
174,894 + -0.5
174,941 - -0.5
174,948 + +0.1
174,949 - +1.8
174,949 - +0.7
174,986 + +1.0
174,986 + +0.7
174,988 + +0.8
174,988 + -0.2
174,988 + -0.1
175,055 + +0.0
175,066 + -0.4
175,067 - -0.5
175,067 - +0.5
175,067 - -0.3
175,086 + +1.7
175,086 + +0.8
175,105 - -1.5
175,127 + -0.2
175,239 - +0.6
175,268 + Echvi_0170 0.10 +2.1
175,268 + Echvi_0170 0.10 +0.1
175,305 + Echvi_0170 0.11 -1.5
175,318 + Echvi_0170 0.11 -0.7
175,318 + Echvi_0170 0.11 +0.4
175,318 + Echvi_0170 0.11 -0.3
175,318 + Echvi_0170 0.11 +1.4
175,319 - Echvi_0170 0.11 +1.1
175,319 - Echvi_0170 0.11 +0.1
175,351 + Echvi_0170 0.12 -0.8
175,360 + Echvi_0170 0.12 +0.8

Or see this region's nucleotide sequence