Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0161 and Echvi_0162 are separated by 46 nucleotides Echvi_0162 and Echvi_0163 are separated by 122 nucleotides Echvi_0163 and Echvi_0164 are separated by 78 nucleotides
Echvi_0161: Echvi_0161 - Exopolyphosphatase, at 164,514 to 165,479
_0161
Echvi_0162: Echvi_0162 - Malate/L-lactate dehydrogenases, at 165,526 to 166,602
_0162
Echvi_0163: Echvi_0163 - Predicted redox protein, regulator of disulfide bond formation, at 166,725 to 167,219
_0163
Echvi_0164: Echvi_0164 - Mannose-1-phosphate guanylyltransferase, at 167,298 to 168,368
_0164
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 164.569 kb on + strand at 164.575 kb on + strand at 164.746 kb on - strand, within Echvi_0161 at 164.797 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 165.027 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.371 kb on - strand, within Echvi_0161 at 165.516 kb on - strand at 165.517 kb on + strand at 166.622 kb on - strand at 166.654 kb on - strand at 166.654 kb on - strand at 166.719 kb on - strand at 166.719 kb on - strand at 166.794 kb on + strand, within Echvi_0163 at 166.795 kb on - strand, within Echvi_0163 at 166.919 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.972 kb on + strand, within Echvi_0163 at 166.973 kb on - strand, within Echvi_0163 at 166.973 kb on - strand, within Echvi_0163 at 166.976 kb on + strand, within Echvi_0163 at 166.977 kb on - strand, within Echvi_0163 at 166.986 kb on + strand, within Echvi_0163 at 167.059 kb on - strand, within Echvi_0163 at 167.130 kb on + strand, within Echvi_0163 at 167.130 kb on + strand, within Echvi_0163 at 167.208 kb on + strand at 167.209 kb on - strand at 167.209 kb on - strand at 167.209 kb on - strand at 167.275 kb on + strand at 167.275 kb on + strand at 167.276 kb on - strand at 167.412 kb on - strand, within Echvi_0164 at 167.456 kb on + strand, within Echvi_0164 at 167.456 kb on + strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.457 kb on - strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.458 kb on + strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.459 kb on - strand, within Echvi_0164 at 167.462 kb on + strand, within Echvi_0164 at 167.463 kb on - strand, within Echvi_0164 at 167.463 kb on - strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.468 kb on + strand, within Echvi_0164 at 167.469 kb on - strand, within Echvi_0164 at 167.472 kb on - strand, within Echvi_0164 at 167.476 kb on + strand, within Echvi_0164 at 167.504 kb on + strand, within Echvi_0164 at 167.505 kb on - strand, within Echvi_0164 at 167.506 kb on - strand, within Echvi_0164 at 167.537 kb on + strand, within Echvi_0164 at 167.538 kb on - strand, within Echvi_0164 at 167.587 kb on + strand, within Echvi_0164
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 164,569 + -1.6 164,575 + -0.1 164,746 - Echvi_0161 0.24 -0.3 164,797 + Echvi_0161 0.29 +0.2 164,868 + Echvi_0161 0.37 +0.7 164,868 + Echvi_0161 0.37 -0.4 165,027 + Echvi_0161 0.53 -1.3 165,088 + Echvi_0161 0.59 -1.6 165,088 + Echvi_0161 0.59 +0.1 165,110 + Echvi_0161 0.62 -1.2 165,110 + Echvi_0161 0.62 -0.3 165,174 + Echvi_0161 0.68 -1.3 165,174 + Echvi_0161 0.68 -2.0 165,174 + Echvi_0161 0.68 +0.5 165,175 - Echvi_0161 0.68 -1.9 165,175 - Echvi_0161 0.68 -1.6 165,175 - Echvi_0161 0.68 -1.6 165,177 + Echvi_0161 0.69 -0.5 165,177 + Echvi_0161 0.69 -0.7 165,178 - Echvi_0161 0.69 -2.2 165,178 - Echvi_0161 0.69 -0.9 165,370 + Echvi_0161 0.89 +0.1 165,370 + Echvi_0161 0.89 +0.2 165,371 - Echvi_0161 0.89 +0.0 165,516 - +3.3 165,517 + +0.2 166,622 - +0.1 166,654 - +0.1 166,654 - +0.2 166,719 - -0.7 166,719 - -0.5 166,794 + Echvi_0163 0.14 -0.1 166,795 - Echvi_0163 0.14 +0.3 166,919 + Echvi_0163 0.39 -0.1 166,972 + Echvi_0163 0.50 +1.1 166,972 + Echvi_0163 0.50 +0.9 166,972 + Echvi_0163 0.50 +0.1 166,973 - Echvi_0163 0.50 -0.8 166,973 - Echvi_0163 0.50 +0.6 166,976 + Echvi_0163 0.51 +0.2 166,977 - Echvi_0163 0.51 -0.4 166,986 + Echvi_0163 0.53 +0.9 167,059 - Echvi_0163 0.67 +0.7 167,130 + Echvi_0163 0.82 -0.3 167,130 + Echvi_0163 0.82 -0.6 167,208 + -0.2 167,209 - -0.9 167,209 - +0.1 167,209 - +0.3 167,275 + +1.7 167,275 + +0.1 167,276 - +0.1 167,412 - Echvi_0164 0.11 +1.4 167,456 + Echvi_0164 0.15 +0.0 167,456 + Echvi_0164 0.15 -0.6 167,457 - Echvi_0164 0.15 -0.9 167,457 - Echvi_0164 0.15 +2.3 167,457 - Echvi_0164 0.15 +0.4 167,458 + Echvi_0164 0.15 -1.1 167,458 + Echvi_0164 0.15 +1.4 167,458 + Echvi_0164 0.15 -0.3 167,458 + Echvi_0164 0.15 +0.2 167,459 - Echvi_0164 0.15 -0.9 167,459 - Echvi_0164 0.15 +0.7 167,459 - Echvi_0164 0.15 +0.6 167,459 - Echvi_0164 0.15 -0.0 167,462 + Echvi_0164 0.15 +1.4 167,463 - Echvi_0164 0.15 +0.3 167,463 - Echvi_0164 0.15 +1.7 167,468 + Echvi_0164 0.16 +1.0 167,468 + Echvi_0164 0.16 -1.6 167,468 + Echvi_0164 0.16 -0.0 167,469 - Echvi_0164 0.16 +0.1 167,472 - Echvi_0164 0.16 +0.2 167,476 + Echvi_0164 0.17 -0.2 167,504 + Echvi_0164 0.19 +0.9 167,505 - Echvi_0164 0.19 -0.1 167,506 - Echvi_0164 0.19 +0.7 167,537 + Echvi_0164 0.22 +1.0 167,538 - Echvi_0164 0.22 +0.7 167,587 + Echvi_0164 0.27 +1.0
Or see this region's nucleotide sequence