Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0004 and Echvi_0005 are separated by 178 nucleotides Echvi_0005 and Echvi_0006 are separated by 15 nucleotides Echvi_0006 and Echvi_0007 overlap by 20 nucleotides Echvi_0007 and Echvi_0008 are separated by 13 nucleotides
Echvi_0004: Echvi_0004 - hypothetical protein, at 3,549 to 3,956
_0004
Echvi_0005: Echvi_0005 - Predicted membrane protein, at 4,135 to 4,671
_0005
Echvi_0006: Echvi_0006 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 4,687 to 5,355
_0006
Echvi_0007: Echvi_0007 - Cytochrome c, mono- and diheme variants, at 5,336 to 5,800
_0007
Echvi_0008: Echvi_0008 - hypothetical protein, at 5,814 to 6,212
_0008
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.695 kb on - strand, within Echvi_0004 at 3.695 kb on - strand, within Echvi_0004 at 3.704 kb on + strand, within Echvi_0004 at 3.705 kb on - strand, within Echvi_0004 at 3.719 kb on + strand, within Echvi_0004 at 3.785 kb on - strand, within Echvi_0004 at 3.795 kb on - strand, within Echvi_0004 at 3.876 kb on - strand, within Echvi_0004 at 3.876 kb on - strand, within Echvi_0004 at 3.925 kb on - strand at 3.931 kb on + strand at 3.931 kb on + strand at 3.931 kb on + strand at 3.932 kb on - strand at 3.935 kb on - strand at 3.936 kb on + strand at 4.013 kb on + strand at 4.014 kb on - strand at 4.017 kb on - strand at 4.049 kb on + strand at 4.677 kb on + strand at 4.709 kb on + strand at 4.709 kb on + strand at 4.709 kb on + strand at 4.709 kb on + strand at 4.710 kb on - strand at 4.713 kb on + strand at 4.891 kb on - strand, within Echvi_0006 at 4.922 kb on + strand, within Echvi_0006 at 4.922 kb on + strand, within Echvi_0006 at 4.922 kb on + strand, within Echvi_0006 at 4.923 kb on - strand, within Echvi_0006 at 4.924 kb on + strand, within Echvi_0006 at 4.925 kb on - strand, within Echvi_0006 at 4.945 kb on - strand, within Echvi_0006 at 4.996 kb on + strand, within Echvi_0006 at 5.033 kb on + strand, within Echvi_0006 at 5.061 kb on + strand, within Echvi_0006 at 5.076 kb on - strand, within Echvi_0006 at 5.259 kb on + strand at 5.260 kb on - strand, within Echvi_0006 at 5.273 kb on - strand, within Echvi_0006 at 5.434 kb on + strand, within Echvi_0007 at 5.475 kb on - strand, within Echvi_0007 at 5.496 kb on + strand, within Echvi_0007 at 5.496 kb on + strand, within Echvi_0007 at 5.496 kb on + strand, within Echvi_0007 at 5.496 kb on + strand, within Echvi_0007 at 5.497 kb on - strand, within Echvi_0007 at 5.497 kb on - strand, within Echvi_0007 at 5.508 kb on - strand, within Echvi_0007 at 5.508 kb on - strand, within Echvi_0007 at 5.661 kb on - strand, within Echvi_0007 at 5.706 kb on + strand, within Echvi_0007 at 5.724 kb on - strand, within Echvi_0007 at 5.724 kb on - strand, within Echvi_0007 at 5.730 kb on - strand, within Echvi_0007 at 5.799 kb on - strand at 5.802 kb on + strand at 5.818 kb on + strand at 5.818 kb on + strand at 5.894 kb on - strand, within Echvi_0008 at 5.936 kb on + strand, within Echvi_0008 at 5.937 kb on - strand, within Echvi_0008 at 5.937 kb on - strand, within Echvi_0008 at 5.938 kb on + strand, within Echvi_0008 at 6.014 kb on + strand, within Echvi_0008 at 6.087 kb on + strand, within Echvi_0008 at 6.242 kb on + strand at 6.242 kb on + strand at 6.242 kb on + strand at 6.243 kb on - strand at 6.243 kb on - strand at 6.243 kb on - strand at 6.243 kb on - strand at 6.244 kb on + strand at 6.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 3,695 - Echvi_0004 0.36 +0.5 3,695 - Echvi_0004 0.36 +0.3 3,704 + Echvi_0004 0.38 -1.4 3,705 - Echvi_0004 0.38 +0.5 3,719 + Echvi_0004 0.42 +0.1 3,785 - Echvi_0004 0.58 +0.7 3,795 - Echvi_0004 0.60 -0.1 3,876 - Echvi_0004 0.80 +0.6 3,876 - Echvi_0004 0.80 +0.7 3,925 - -0.2 3,931 + +1.1 3,931 + -0.1 3,931 + +0.5 3,932 - -0.0 3,935 - +0.2 3,936 + +0.3 4,013 + -0.1 4,014 - -0.4 4,017 - +1.2 4,049 + -1.1 4,677 + -0.5 4,709 + -0.2 4,709 + -0.6 4,709 + -0.7 4,709 + -1.8 4,710 - -0.7 4,713 + -0.6 4,891 - Echvi_0006 0.30 -0.6 4,922 + Echvi_0006 0.35 -0.0 4,922 + Echvi_0006 0.35 -0.1 4,922 + Echvi_0006 0.35 -1.7 4,923 - Echvi_0006 0.35 +0.1 4,924 + Echvi_0006 0.35 -0.1 4,925 - Echvi_0006 0.36 +1.7 4,945 - Echvi_0006 0.39 -1.5 4,996 + Echvi_0006 0.46 -0.3 5,033 + Echvi_0006 0.52 -0.2 5,061 + Echvi_0006 0.56 +0.1 5,076 - Echvi_0006 0.58 -0.9 5,259 + +1.7 5,260 - Echvi_0006 0.86 -1.5 5,273 - Echvi_0006 0.88 -2.3 5,434 + Echvi_0007 0.21 -1.2 5,475 - Echvi_0007 0.30 -1.2 5,496 + Echvi_0007 0.34 -2.0 5,496 + Echvi_0007 0.34 -0.6 5,496 + Echvi_0007 0.34 -0.8 5,496 + Echvi_0007 0.34 -0.0 5,497 - Echvi_0007 0.35 -0.4 5,497 - Echvi_0007 0.35 +1.3 5,508 - Echvi_0007 0.37 +0.7 5,508 - Echvi_0007 0.37 -0.3 5,661 - Echvi_0007 0.70 -0.0 5,706 + Echvi_0007 0.80 -2.8 5,724 - Echvi_0007 0.83 +0.9 5,724 - Echvi_0007 0.83 -1.8 5,730 - Echvi_0007 0.85 -2.4 5,799 - +1.1 5,802 + +0.2 5,818 + -0.8 5,818 + +0.1 5,894 - Echvi_0008 0.20 -0.2 5,936 + Echvi_0008 0.31 -0.6 5,937 - Echvi_0008 0.31 +0.4 5,937 - Echvi_0008 0.31 -0.5 5,938 + Echvi_0008 0.31 -0.6 6,014 + Echvi_0008 0.50 +0.6 6,087 + Echvi_0008 0.68 -1.8 6,242 + -0.2 6,242 + +0.1 6,242 + -0.3 6,243 - -0.3 6,243 - +2.7 6,243 - -0.8 6,243 - -0.1 6,244 + -0.5 6,245 - +0.0
Or see this region's nucleotide sequence