Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiH and yjiI are separated by 249 nucleotides yjiI and yjiJ are separated by 12 nucleotides yjiJ and yjiK are separated by 67 nucleotides
b4330: yjiH - orf, hypothetical protein (VIMSS), at 4,558,020 to 4,558,703
yjiH
b4331: yjiI - orf, hypothetical protein (VIMSS), at 4,558,953 to 4,559,507
yjiI
b4332: yjiJ - predicted inner membrane protein (NCBI), at 4,559,520 to 4,560,698
yjiJ
b4333: yjiK - conserved protein (RefSeq), at 4,560,766 to 4,561,626
yjiK
Position (kb)
4559
4560
4561 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4558.741 kb on - strand at 4558.880 kb on - strand at 4559.040 kb on + strand, within yjiI at 4559.040 kb on + strand, within yjiI at 4559.045 kb on - strand, within yjiI at 4559.050 kb on + strand, within yjiI at 4559.050 kb on + strand, within yjiI at 4559.082 kb on + strand, within yjiI at 4559.082 kb on + strand, within yjiI at 4559.113 kb on + strand, within yjiI at 4559.141 kb on - strand, within yjiI at 4559.183 kb on - strand, within yjiI at 4559.196 kb on + strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.204 kb on - strand, within yjiI at 4559.286 kb on - strand, within yjiI at 4559.286 kb on - strand, within yjiI at 4559.338 kb on - strand, within yjiI at 4559.340 kb on - strand, within yjiI at 4559.361 kb on - strand, within yjiI at 4559.482 kb on - strand at 4559.542 kb on - strand at 4559.557 kb on + strand at 4559.575 kb on + strand at 4559.575 kb on + strand at 4559.644 kb on - strand, within yjiJ at 4559.649 kb on - strand, within yjiJ at 4559.651 kb on - strand, within yjiJ at 4559.690 kb on - strand, within yjiJ at 4559.734 kb on - strand, within yjiJ at 4559.734 kb on - strand, within yjiJ at 4559.747 kb on + strand, within yjiJ at 4559.788 kb on - strand, within yjiJ at 4559.882 kb on - strand, within yjiJ at 4559.927 kb on + strand, within yjiJ at 4559.927 kb on + strand, within yjiJ at 4559.978 kb on - strand, within yjiJ at 4559.984 kb on - strand, within yjiJ at 4560.037 kb on + strand, within yjiJ at 4560.047 kb on + strand, within yjiJ at 4560.047 kb on - strand, within yjiJ at 4560.047 kb on - strand, within yjiJ at 4560.068 kb on - strand, within yjiJ at 4560.068 kb on - strand, within yjiJ at 4560.148 kb on + strand, within yjiJ at 4560.150 kb on - strand, within yjiJ at 4560.220 kb on + strand, within yjiJ at 4560.223 kb on - strand, within yjiJ at 4560.294 kb on - strand, within yjiJ at 4560.353 kb on - strand, within yjiJ at 4560.355 kb on + strand, within yjiJ at 4560.460 kb on + strand, within yjiJ at 4560.499 kb on + strand, within yjiJ at 4560.505 kb on + strand, within yjiJ at 4560.513 kb on - strand, within yjiJ at 4560.529 kb on + strand, within yjiJ at 4560.587 kb on + strand at 4560.609 kb on + strand at 4560.677 kb on - strand at 4560.677 kb on - strand at 4560.708 kb on + strand at 4560.782 kb on - strand at 4560.859 kb on - strand, within yjiK at 4560.861 kb on + strand, within yjiK at 4560.874 kb on + strand, within yjiK at 4560.927 kb on - strand, within yjiK at 4560.937 kb on + strand, within yjiK at 4560.937 kb on + strand, within yjiK at 4560.945 kb on - strand, within yjiK at 4560.945 kb on - strand, within yjiK at 4560.954 kb on + strand, within yjiK at 4560.961 kb on + strand, within yjiK at 4560.962 kb on + strand, within yjiK at 4560.964 kb on - strand, within yjiK at 4560.964 kb on - strand, within yjiK at 4560.969 kb on - strand, within yjiK at 4560.972 kb on - strand, within yjiK at 4560.975 kb on - strand, within yjiK at 4561.062 kb on + strand, within yjiK at 4561.065 kb on - strand, within yjiK at 4561.070 kb on + strand, within yjiK at 4561.141 kb on - strand, within yjiK at 4561.141 kb on - strand, within yjiK at 4561.230 kb on + strand, within yjiK at 4561.276 kb on + strand, within yjiK at 4561.276 kb on + strand, within yjiK at 4561.341 kb on + strand, within yjiK at 4561.341 kb on + strand, within yjiK at 4561.372 kb on - strand, within yjiK at 4561.401 kb on - strand, within yjiK at 4561.425 kb on + strand, within yjiK at 4561.425 kb on + strand, within yjiK at 4561.436 kb on - strand, within yjiK at 4561.438 kb on - strand, within yjiK at 4561.438 kb on - strand, within yjiK at 4561.492 kb on - strand, within yjiK at 4561.500 kb on + strand, within yjiK at 4561.506 kb on - strand, within yjiK at 4561.506 kb on - strand, within yjiK at 4561.540 kb on - strand, within yjiK at 4561.540 kb on - strand, within yjiK at 4561.550 kb on + strand at 4561.552 kb on + strand at 4561.552 kb on + strand at 4561.552 kb on + strand at 4561.560 kb on + strand at 4561.560 kb on + strand at 4561.568 kb on + strand at 4561.596 kb on + strand at 4561.604 kb on - strand at 4561.643 kb on - strand at 4561.646 kb on + strand at 4561.646 kb on + strand at 4561.675 kb on - strand at 4561.677 kb on + strand at 4561.677 kb on + strand at 4561.677 kb on + strand at 4561.677 kb on + strand at 4561.677 kb on + strand at 4561.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 4,558,741 - -0.0 4,558,880 - -0.8 4,559,040 + yjiI b4331 0.16 +1.1 4,559,040 + yjiI b4331 0.16 +0.1 4,559,045 - yjiI b4331 0.17 +0.6 4,559,050 + yjiI b4331 0.17 +0.9 4,559,050 + yjiI b4331 0.17 -0.6 4,559,082 + yjiI b4331 0.23 +0.3 4,559,082 + yjiI b4331 0.23 +0.6 4,559,113 + yjiI b4331 0.29 +0.4 4,559,141 - yjiI b4331 0.34 +0.6 4,559,183 - yjiI b4331 0.41 -0.7 4,559,196 + yjiI b4331 0.44 +0.2 4,559,204 - yjiI b4331 0.45 -1.3 4,559,204 - yjiI b4331 0.45 +0.9 4,559,204 - yjiI b4331 0.45 +0.8 4,559,286 - yjiI b4331 0.60 -0.4 4,559,286 - yjiI b4331 0.60 -0.3 4,559,338 - yjiI b4331 0.69 -0.9 4,559,340 - yjiI b4331 0.70 +0.7 4,559,361 - yjiI b4331 0.74 +0.1 4,559,482 - -1.0 4,559,542 - +0.9 4,559,557 + +1.1 4,559,575 + -1.8 4,559,575 + +0.1 4,559,644 - yjiJ b4332 0.11 +0.7 4,559,649 - yjiJ b4332 0.11 +0.5 4,559,651 - yjiJ b4332 0.11 +1.3 4,559,690 - yjiJ b4332 0.14 +1.0 4,559,734 - yjiJ b4332 0.18 +2.6 4,559,734 - yjiJ b4332 0.18 -0.9 4,559,747 + yjiJ b4332 0.19 +1.0 4,559,788 - yjiJ b4332 0.23 +1.6 4,559,882 - yjiJ b4332 0.31 +1.0 4,559,927 + yjiJ b4332 0.35 -0.2 4,559,927 + yjiJ b4332 0.35 -0.4 4,559,978 - yjiJ b4332 0.39 -0.2 4,559,984 - yjiJ b4332 0.39 -1.6 4,560,037 + yjiJ b4332 0.44 -0.3 4,560,047 + yjiJ b4332 0.45 +1.4 4,560,047 - yjiJ b4332 0.45 -0.0 4,560,047 - yjiJ b4332 0.45 -0.0 4,560,068 - yjiJ b4332 0.46 +3.4 4,560,068 - yjiJ b4332 0.46 -0.3 4,560,148 + yjiJ b4332 0.53 +0.6 4,560,150 - yjiJ b4332 0.53 -1.0 4,560,220 + yjiJ b4332 0.59 +2.9 4,560,223 - yjiJ b4332 0.60 +0.6 4,560,294 - yjiJ b4332 0.66 +1.9 4,560,353 - yjiJ b4332 0.71 -0.4 4,560,355 + yjiJ b4332 0.71 -0.9 4,560,460 + yjiJ b4332 0.80 +2.3 4,560,499 + yjiJ b4332 0.83 +0.8 4,560,505 + yjiJ b4332 0.84 +0.8 4,560,513 - yjiJ b4332 0.84 -1.8 4,560,529 + yjiJ b4332 0.86 +0.0 4,560,587 + -0.4 4,560,609 + -1.0 4,560,677 - -1.8 4,560,677 - -1.0 4,560,708 + +1.6 4,560,782 - +0.6 4,560,859 - yjiK b4333 0.11 +1.2 4,560,861 + yjiK b4333 0.11 -1.0 4,560,874 + yjiK b4333 0.13 +0.2 4,560,927 - yjiK b4333 0.19 +0.0 4,560,937 + yjiK b4333 0.20 -1.8 4,560,937 + yjiK b4333 0.20 +0.6 4,560,945 - yjiK b4333 0.21 +1.1 4,560,945 - yjiK b4333 0.21 -0.8 4,560,954 + yjiK b4333 0.22 +0.6 4,560,961 + yjiK b4333 0.23 +1.0 4,560,962 + yjiK b4333 0.23 -0.3 4,560,964 - yjiK b4333 0.23 +1.6 4,560,964 - yjiK b4333 0.23 +0.6 4,560,969 - yjiK b4333 0.24 +0.6 4,560,972 - yjiK b4333 0.24 -0.4 4,560,975 - yjiK b4333 0.24 +0.4 4,561,062 + yjiK b4333 0.34 +0.8 4,561,065 - yjiK b4333 0.35 +0.1 4,561,070 + yjiK b4333 0.35 -1.4 4,561,141 - yjiK b4333 0.44 -0.9 4,561,141 - yjiK b4333 0.44 +1.6 4,561,230 + yjiK b4333 0.54 +0.8 4,561,276 + yjiK b4333 0.59 +2.1 4,561,276 + yjiK b4333 0.59 +0.6 4,561,341 + yjiK b4333 0.67 -0.2 4,561,341 + yjiK b4333 0.67 +0.3 4,561,372 - yjiK b4333 0.70 -0.8 4,561,401 - yjiK b4333 0.74 -0.0 4,561,425 + yjiK b4333 0.77 +2.1 4,561,425 + yjiK b4333 0.77 +0.6 4,561,436 - yjiK b4333 0.78 +1.1 4,561,438 - yjiK b4333 0.78 -0.4 4,561,438 - yjiK b4333 0.78 +2.1 4,561,492 - yjiK b4333 0.84 -0.7 4,561,500 + yjiK b4333 0.85 +2.3 4,561,506 - yjiK b4333 0.86 +0.6 4,561,506 - yjiK b4333 0.86 +1.6 4,561,540 - yjiK b4333 0.90 +1.0 4,561,540 - yjiK b4333 0.90 +1.9 4,561,550 + +0.2 4,561,552 + +0.2 4,561,552 + -1.3 4,561,552 + -1.4 4,561,560 + -2.3 4,561,560 + +0.1 4,561,568 + -0.1 4,561,596 + -2.3 4,561,604 - -1.0 4,561,643 - -0.4 4,561,646 + -1.4 4,561,646 + +1.3 4,561,675 - -0.3 4,561,677 + +0.6 4,561,677 + +0.6 4,561,677 + +0.8 4,561,677 + -0.4 4,561,677 + -1.8 4,561,685 - -0.1
Or see this region's nucleotide sequence