Strain Fitness in Escherichia coli BW25113 around b4332

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjiH and yjiI are separated by 249 nucleotidesyjiI and yjiJ are separated by 12 nucleotidesyjiJ and yjiK are separated by 67 nucleotides b4330: yjiH - orf, hypothetical protein (VIMSS), at 4,558,020 to 4,558,703 yjiH b4331: yjiI - orf, hypothetical protein (VIMSS), at 4,558,953 to 4,559,507 yjiI b4332: yjiJ - predicted inner membrane protein (NCBI), at 4,559,520 to 4,560,698 yjiJ b4333: yjiK - conserved protein (RefSeq), at 4,560,766 to 4,561,626 yjiK Position (kb) 4559 4560 4561Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4558.741 kb on - strandat 4558.880 kb on - strandat 4559.040 kb on + strand, within yjiIat 4559.040 kb on + strand, within yjiIat 4559.045 kb on - strand, within yjiIat 4559.050 kb on + strand, within yjiIat 4559.050 kb on + strand, within yjiIat 4559.082 kb on + strand, within yjiIat 4559.082 kb on + strand, within yjiIat 4559.113 kb on + strand, within yjiIat 4559.141 kb on - strand, within yjiIat 4559.183 kb on - strand, within yjiIat 4559.196 kb on + strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.204 kb on - strand, within yjiIat 4559.286 kb on - strand, within yjiIat 4559.286 kb on - strand, within yjiIat 4559.338 kb on - strand, within yjiIat 4559.340 kb on - strand, within yjiIat 4559.361 kb on - strand, within yjiIat 4559.482 kb on - strandat 4559.542 kb on - strandat 4559.557 kb on + strandat 4559.575 kb on + strandat 4559.575 kb on + strandat 4559.644 kb on - strand, within yjiJat 4559.649 kb on - strand, within yjiJat 4559.651 kb on - strand, within yjiJat 4559.690 kb on - strand, within yjiJat 4559.734 kb on - strand, within yjiJat 4559.734 kb on - strand, within yjiJat 4559.747 kb on + strand, within yjiJat 4559.788 kb on - strand, within yjiJat 4559.882 kb on - strand, within yjiJat 4559.927 kb on + strand, within yjiJat 4559.927 kb on + strand, within yjiJat 4559.978 kb on - strand, within yjiJat 4559.984 kb on - strand, within yjiJat 4560.037 kb on + strand, within yjiJat 4560.047 kb on + strand, within yjiJat 4560.047 kb on - strand, within yjiJat 4560.047 kb on - strand, within yjiJat 4560.068 kb on - strand, within yjiJat 4560.068 kb on - strand, within yjiJat 4560.148 kb on + strand, within yjiJat 4560.150 kb on - strand, within yjiJat 4560.220 kb on + strand, within yjiJat 4560.223 kb on - strand, within yjiJat 4560.294 kb on - strand, within yjiJat 4560.353 kb on - strand, within yjiJat 4560.355 kb on + strand, within yjiJat 4560.460 kb on + strand, within yjiJat 4560.499 kb on + strand, within yjiJat 4560.505 kb on + strand, within yjiJat 4560.513 kb on - strand, within yjiJat 4560.529 kb on + strand, within yjiJat 4560.587 kb on + strandat 4560.609 kb on + strandat 4560.677 kb on - strandat 4560.677 kb on - strandat 4560.708 kb on + strandat 4560.782 kb on - strandat 4560.859 kb on - strand, within yjiKat 4560.861 kb on + strand, within yjiKat 4560.874 kb on + strand, within yjiKat 4560.927 kb on - strand, within yjiKat 4560.937 kb on + strand, within yjiKat 4560.937 kb on + strand, within yjiKat 4560.945 kb on - strand, within yjiKat 4560.945 kb on - strand, within yjiKat 4560.954 kb on + strand, within yjiKat 4560.961 kb on + strand, within yjiKat 4560.962 kb on + strand, within yjiKat 4560.964 kb on - strand, within yjiKat 4560.964 kb on - strand, within yjiKat 4560.969 kb on - strand, within yjiKat 4560.972 kb on - strand, within yjiKat 4560.975 kb on - strand, within yjiKat 4561.062 kb on + strand, within yjiKat 4561.065 kb on - strand, within yjiKat 4561.070 kb on + strand, within yjiKat 4561.141 kb on - strand, within yjiKat 4561.141 kb on - strand, within yjiKat 4561.230 kb on + strand, within yjiKat 4561.276 kb on + strand, within yjiKat 4561.276 kb on + strand, within yjiKat 4561.341 kb on + strand, within yjiKat 4561.341 kb on + strand, within yjiKat 4561.372 kb on - strand, within yjiKat 4561.401 kb on - strand, within yjiKat 4561.425 kb on + strand, within yjiKat 4561.425 kb on + strand, within yjiKat 4561.436 kb on - strand, within yjiKat 4561.438 kb on - strand, within yjiKat 4561.438 kb on - strand, within yjiKat 4561.492 kb on - strand, within yjiKat 4561.500 kb on + strand, within yjiKat 4561.506 kb on - strand, within yjiKat 4561.506 kb on - strand, within yjiKat 4561.540 kb on - strand, within yjiKat 4561.540 kb on - strand, within yjiKat 4561.550 kb on + strandat 4561.552 kb on + strandat 4561.552 kb on + strandat 4561.552 kb on + strandat 4561.560 kb on + strandat 4561.560 kb on + strandat 4561.568 kb on + strandat 4561.596 kb on + strandat 4561.604 kb on - strandat 4561.643 kb on - strandat 4561.646 kb on + strandat 4561.646 kb on + strandat 4561.675 kb on - strandat 4561.677 kb on + strandat 4561.677 kb on + strandat 4561.677 kb on + strandat 4561.677 kb on + strandat 4561.677 kb on + strandat 4561.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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4,558,741 - -0.0
4,558,880 - -0.8
4,559,040 + yjiI b4331 0.16 +1.1
4,559,040 + yjiI b4331 0.16 +0.1
4,559,045 - yjiI b4331 0.17 +0.6
4,559,050 + yjiI b4331 0.17 +0.9
4,559,050 + yjiI b4331 0.17 -0.6
4,559,082 + yjiI b4331 0.23 +0.3
4,559,082 + yjiI b4331 0.23 +0.6
4,559,113 + yjiI b4331 0.29 +0.4
4,559,141 - yjiI b4331 0.34 +0.6
4,559,183 - yjiI b4331 0.41 -0.7
4,559,196 + yjiI b4331 0.44 +0.2
4,559,204 - yjiI b4331 0.45 -1.3
4,559,204 - yjiI b4331 0.45 +0.9
4,559,204 - yjiI b4331 0.45 +0.8
4,559,286 - yjiI b4331 0.60 -0.4
4,559,286 - yjiI b4331 0.60 -0.3
4,559,338 - yjiI b4331 0.69 -0.9
4,559,340 - yjiI b4331 0.70 +0.7
4,559,361 - yjiI b4331 0.74 +0.1
4,559,482 - -1.0
4,559,542 - +0.9
4,559,557 + +1.1
4,559,575 + -1.8
4,559,575 + +0.1
4,559,644 - yjiJ b4332 0.11 +0.7
4,559,649 - yjiJ b4332 0.11 +0.5
4,559,651 - yjiJ b4332 0.11 +1.3
4,559,690 - yjiJ b4332 0.14 +1.0
4,559,734 - yjiJ b4332 0.18 +2.6
4,559,734 - yjiJ b4332 0.18 -0.9
4,559,747 + yjiJ b4332 0.19 +1.0
4,559,788 - yjiJ b4332 0.23 +1.6
4,559,882 - yjiJ b4332 0.31 +1.0
4,559,927 + yjiJ b4332 0.35 -0.2
4,559,927 + yjiJ b4332 0.35 -0.4
4,559,978 - yjiJ b4332 0.39 -0.2
4,559,984 - yjiJ b4332 0.39 -1.6
4,560,037 + yjiJ b4332 0.44 -0.3
4,560,047 + yjiJ b4332 0.45 +1.4
4,560,047 - yjiJ b4332 0.45 -0.0
4,560,047 - yjiJ b4332 0.45 -0.0
4,560,068 - yjiJ b4332 0.46 +3.4
4,560,068 - yjiJ b4332 0.46 -0.3
4,560,148 + yjiJ b4332 0.53 +0.6
4,560,150 - yjiJ b4332 0.53 -1.0
4,560,220 + yjiJ b4332 0.59 +2.9
4,560,223 - yjiJ b4332 0.60 +0.6
4,560,294 - yjiJ b4332 0.66 +1.9
4,560,353 - yjiJ b4332 0.71 -0.4
4,560,355 + yjiJ b4332 0.71 -0.9
4,560,460 + yjiJ b4332 0.80 +2.3
4,560,499 + yjiJ b4332 0.83 +0.8
4,560,505 + yjiJ b4332 0.84 +0.8
4,560,513 - yjiJ b4332 0.84 -1.8
4,560,529 + yjiJ b4332 0.86 +0.0
4,560,587 + -0.4
4,560,609 + -1.0
4,560,677 - -1.8
4,560,677 - -1.0
4,560,708 + +1.6
4,560,782 - +0.6
4,560,859 - yjiK b4333 0.11 +1.2
4,560,861 + yjiK b4333 0.11 -1.0
4,560,874 + yjiK b4333 0.13 +0.2
4,560,927 - yjiK b4333 0.19 +0.0
4,560,937 + yjiK b4333 0.20 -1.8
4,560,937 + yjiK b4333 0.20 +0.6
4,560,945 - yjiK b4333 0.21 +1.1
4,560,945 - yjiK b4333 0.21 -0.8
4,560,954 + yjiK b4333 0.22 +0.6
4,560,961 + yjiK b4333 0.23 +1.0
4,560,962 + yjiK b4333 0.23 -0.3
4,560,964 - yjiK b4333 0.23 +1.6
4,560,964 - yjiK b4333 0.23 +0.6
4,560,969 - yjiK b4333 0.24 +0.6
4,560,972 - yjiK b4333 0.24 -0.4
4,560,975 - yjiK b4333 0.24 +0.4
4,561,062 + yjiK b4333 0.34 +0.8
4,561,065 - yjiK b4333 0.35 +0.1
4,561,070 + yjiK b4333 0.35 -1.4
4,561,141 - yjiK b4333 0.44 -0.9
4,561,141 - yjiK b4333 0.44 +1.6
4,561,230 + yjiK b4333 0.54 +0.8
4,561,276 + yjiK b4333 0.59 +2.1
4,561,276 + yjiK b4333 0.59 +0.6
4,561,341 + yjiK b4333 0.67 -0.2
4,561,341 + yjiK b4333 0.67 +0.3
4,561,372 - yjiK b4333 0.70 -0.8
4,561,401 - yjiK b4333 0.74 -0.0
4,561,425 + yjiK b4333 0.77 +2.1
4,561,425 + yjiK b4333 0.77 +0.6
4,561,436 - yjiK b4333 0.78 +1.1
4,561,438 - yjiK b4333 0.78 -0.4
4,561,438 - yjiK b4333 0.78 +2.1
4,561,492 - yjiK b4333 0.84 -0.7
4,561,500 + yjiK b4333 0.85 +2.3
4,561,506 - yjiK b4333 0.86 +0.6
4,561,506 - yjiK b4333 0.86 +1.6
4,561,540 - yjiK b4333 0.90 +1.0
4,561,540 - yjiK b4333 0.90 +1.9
4,561,550 + +0.2
4,561,552 + +0.2
4,561,552 + -1.3
4,561,552 + -1.4
4,561,560 + -2.3
4,561,560 + +0.1
4,561,568 + -0.1
4,561,596 + -2.3
4,561,604 - -1.0
4,561,643 - -0.4
4,561,646 + -1.4
4,561,646 + +1.3
4,561,675 - -0.3
4,561,677 + +0.6
4,561,677 + +0.6
4,561,677 + +0.8
4,561,677 + -0.4
4,561,677 + -1.8
4,561,685 - -0.1

Or see this region's nucleotide sequence