Strain Fitness in Escherichia coli BW25113 around b4290
Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chlorite 1.25 mM |
---|---|---|---|---|---|
remove | |||||
4,510,471 | + | +2.3 | |||
4,510,507 | + | +1.5 | |||
4,510,546 | - | fecC | b4289 | 0.11 | +2.1 |
4,510,546 | - | fecC | b4289 | 0.11 | +1.9 |
4,510,578 | + | fecC | b4289 | 0.14 | +0.8 |
4,510,580 | - | fecC | b4289 | 0.15 | +1.1 |
4,510,581 | - | fecC | b4289 | 0.15 | +1.7 |
4,510,617 | - | fecC | b4289 | 0.18 | +2.4 |
4,510,642 | - | fecC | b4289 | 0.21 | +1.8 |
4,510,642 | - | fecC | b4289 | 0.21 | +1.8 |
4,510,685 | - | fecC | b4289 | 0.25 | +0.6 |
4,510,687 | - | fecC | b4289 | 0.25 | +1.6 |
4,510,692 | - | fecC | b4289 | 0.26 | +0.8 |
4,510,702 | - | fecC | b4289 | 0.27 | +2.3 |
4,510,702 | - | fecC | b4289 | 0.27 | +2.3 |
4,510,707 | - | fecC | b4289 | 0.27 | +2.7 |
4,510,711 | + | fecC | b4289 | 0.28 | +1.8 |
4,510,729 | - | fecC | b4289 | 0.30 | -0.4 |
4,510,743 | - | fecC | b4289 | 0.31 | +1.6 |
4,510,745 | + | fecC | b4289 | 0.31 | +0.4 |
4,510,745 | + | fecC | b4289 | 0.31 | +2.0 |
4,510,748 | + | fecC | b4289 | 0.31 | +2.1 |
4,510,748 | + | fecC | b4289 | 0.31 | +2.7 |
4,510,750 | - | fecC | b4289 | 0.32 | +1.6 |
4,510,750 | - | fecC | b4289 | 0.32 | +1.9 |
4,510,783 | - | fecC | b4289 | 0.35 | +1.4 |
4,510,800 | + | fecC | b4289 | 0.37 | +2.1 |
4,510,805 | - | fecC | b4289 | 0.37 | -0.4 |
4,510,819 | - | fecC | b4289 | 0.39 | +1.7 |
4,510,821 | - | fecC | b4289 | 0.39 | +2.9 |
4,510,836 | + | fecC | b4289 | 0.40 | +2.0 |
4,510,836 | - | fecC | b4289 | 0.40 | +2.0 |
4,510,836 | - | fecC | b4289 | 0.40 | +0.6 |
4,510,852 | - | fecC | b4289 | 0.42 | -0.0 |
4,510,868 | + | fecC | b4289 | 0.43 | -0.8 |
4,510,979 | + | fecC | b4289 | 0.55 | +1.8 |
4,510,979 | + | fecC | b4289 | 0.55 | +1.8 |
4,511,022 | + | fecC | b4289 | 0.59 | +1.8 |
4,511,022 | + | fecC | b4289 | 0.59 | +3.4 |
4,511,080 | - | fecC | b4289 | 0.65 | +0.6 |
4,511,080 | - | fecC | b4289 | 0.65 | +2.9 |
4,511,081 | - | fecC | b4289 | 0.65 | +0.8 |
4,511,090 | + | fecC | b4289 | 0.66 | +0.6 |
4,511,121 | + | fecC | b4289 | 0.69 | +1.1 |
4,511,121 | + | fecC | b4289 | 0.69 | +2.0 |
4,511,153 | + | fecC | b4289 | 0.72 | +2.1 |
4,511,153 | + | fecC | b4289 | 0.72 | +2.4 |
4,511,153 | + | fecC | b4289 | 0.72 | +2.7 |
4,511,161 | - | fecC | b4289 | 0.73 | +1.1 |
4,511,192 | - | fecC | b4289 | 0.76 | +2.0 |
4,511,248 | - | fecC | b4289 | 0.81 | +2.4 |
4,511,270 | + | fecC | b4289 | 0.84 | -1.0 |
4,511,270 | + | fecC | b4289 | 0.84 | +1.0 |
4,511,290 | - | fecC | b4289 | 0.86 | +1.9 |
4,511,290 | - | fecC | b4289 | 0.86 | +2.3 |
4,511,293 | + | fecC | b4289 | 0.86 | +0.9 |
4,511,293 | + | fecC | b4289 | 0.86 | +2.0 |
4,511,339 | + | +2.0 | |||
4,511,403 | - | +1.1 | |||
4,511,405 | + | +2.5 | |||
4,511,406 | - | -1.4 | |||
4,511,460 | - | +1.4 | |||
4,511,523 | + | fecB | b4290 | 0.10 | +2.7 |
4,511,523 | + | fecB | b4290 | 0.10 | +2.0 |
4,511,526 | - | fecB | b4290 | 0.11 | +2.1 |
4,511,565 | + | fecB | b4290 | 0.15 | +1.6 |
4,511,570 | - | fecB | b4290 | 0.16 | +3.5 |
4,511,572 | - | fecB | b4290 | 0.16 | +2.1 |
4,511,595 | - | fecB | b4290 | 0.18 | +2.6 |
4,511,595 | - | fecB | b4290 | 0.18 | +1.7 |
4,511,604 | + | fecB | b4290 | 0.19 | +2.0 |
4,511,604 | + | fecB | b4290 | 0.19 | +2.1 |
4,511,604 | + | fecB | b4290 | 0.19 | +0.6 |
4,511,607 | - | fecB | b4290 | 0.20 | +1.4 |
4,511,607 | - | fecB | b4290 | 0.20 | +2.6 |
4,511,616 | + | fecB | b4290 | 0.21 | +1.3 |
4,511,622 | - | fecB | b4290 | 0.21 | +1.6 |
4,511,638 | - | fecB | b4290 | 0.23 | +1.1 |
4,511,638 | - | fecB | b4290 | 0.23 | -1.8 |
4,511,639 | - | fecB | b4290 | 0.23 | +1.1 |
4,511,639 | - | fecB | b4290 | 0.23 | +0.2 |
4,511,683 | + | fecB | b4290 | 0.28 | +2.0 |
4,511,683 | + | fecB | b4290 | 0.28 | +1.0 |
4,511,727 | - | fecB | b4290 | 0.33 | +2.2 |
4,511,727 | - | fecB | b4290 | 0.33 | +2.1 |
4,511,745 | + | +0.6 | |||
4,511,745 | + | fecB | b4290 | 0.35 | +2.6 |
4,511,811 | + | fecB | b4290 | 0.42 | -0.4 |
4,511,811 | + | fecB | b4290 | 0.42 | +2.6 |
4,511,824 | + | fecB | b4290 | 0.44 | -0.2 |
4,511,846 | - | fecB | b4290 | 0.46 | +2.5 |
4,511,988 | + | fecB | b4290 | 0.62 | +1.0 |
4,511,988 | + | fecB | b4290 | 0.62 | +1.9 |
4,512,019 | - | fecB | b4290 | 0.65 | +1.9 |
4,512,061 | - | fecB | b4290 | 0.70 | +1.6 |
4,512,095 | + | fecB | b4290 | 0.74 | +1.2 |
4,512,095 | + | fecB | b4290 | 0.74 | +1.8 |
4,512,096 | - | fecB | b4290 | 0.74 | +2.0 |
4,512,096 | - | fecB | b4290 | 0.74 | +2.1 |
4,512,119 | - | fecB | b4290 | 0.76 | +1.6 |
4,512,127 | + | fecB | b4290 | 0.77 | +1.4 |
4,512,127 | + | fecB | b4290 | 0.77 | +2.0 |
4,512,129 | - | fecB | b4290 | 0.78 | +2.1 |
4,512,145 | + | fecB | b4290 | 0.79 | +1.6 |
4,512,235 | + | fecB | b4290 | 0.89 | +2.4 |
4,512,235 | + | fecB | b4290 | 0.89 | +3.3 |
4,512,235 | + | fecB | b4290 | 0.89 | +2.4 |
4,512,235 | + | fecB | b4290 | 0.89 | +1.0 |
4,512,262 | - | -0.3 | |||
4,512,262 | - | -1.0 | |||
4,512,262 | - | +1.0 | |||
4,512,262 | - | +0.3 | |||
4,512,341 | - | +0.6 | |||
4,512,372 | - | -2.1 | |||
4,512,372 | - | -1.0 | |||
4,512,417 | + | +1.6 | |||
4,512,417 | + | +2.6 | |||
4,512,422 | + | -0.9 | |||
4,512,452 | - | +0.9 | |||
4,512,460 | - | +1.7 | |||
4,512,499 | - | +0.9 | |||
4,512,527 | + | +1.8 | |||
4,512,527 | + | +3.0 | |||
4,512,581 | - | +1.5 | |||
4,512,586 | - | +1.9 | |||
4,512,673 | + | fecA | b4291 | 0.13 | +1.8 |
4,512,735 | - | fecA | b4291 | 0.15 | +3.1 |
4,512,735 | - | fecA | b4291 | 0.15 | -0.4 |
4,512,771 | - | fecA | b4291 | 0.17 | +2.6 |
4,512,812 | + | fecA | b4291 | 0.19 | +1.9 |
4,512,820 | - | fecA | b4291 | 0.19 | +1.7 |
4,512,830 | - | fecA | b4291 | 0.20 | +1.7 |
4,512,835 | - | fecA | b4291 | 0.20 | +0.7 |
4,512,835 | - | fecA | b4291 | 0.20 | +3.6 |
4,512,881 | + | fecA | b4291 | 0.22 | +0.8 |
4,512,902 | - | fecA | b4291 | 0.23 | +0.8 |
4,512,902 | - | fecA | b4291 | 0.23 | +2.0 |
4,512,962 | + | fecA | b4291 | 0.25 | +0.1 |
4,512,962 | + | fecA | b4291 | 0.25 | -1.3 |
4,512,967 | - | fecA | b4291 | 0.25 | +0.6 |
4,512,986 | - | fecA | b4291 | 0.26 | +1.9 |
4,513,025 | + | fecA | b4291 | 0.28 | +2.5 |
4,513,025 | + | fecA | b4291 | 0.28 | +1.4 |
4,513,037 | - | fecA | b4291 | 0.28 | +1.8 |
4,513,042 | + | fecA | b4291 | 0.29 | +1.6 |
4,513,045 | + | fecA | b4291 | 0.29 | +0.4 |
4,513,045 | + | fecA | b4291 | 0.29 | +1.4 |
4,513,050 | - | fecA | b4291 | 0.29 | +0.6 |
4,513,050 | - | fecA | b4291 | 0.29 | +2.6 |
4,513,050 | - | fecA | b4291 | 0.29 | -0.4 |
4,513,050 | - | fecA | b4291 | 0.29 | +1.9 |
4,513,050 | - | fecA | b4291 | 0.29 | +0.7 |
4,513,052 | - | fecA | b4291 | 0.29 | +1.6 |
4,513,134 | + | fecA | b4291 | 0.33 | +2.6 |
4,513,174 | + | fecA | b4291 | 0.34 | +1.6 |
4,513,182 | - | fecA | b4291 | 0.35 | +1.2 |
4,513,271 | + | fecA | b4291 | 0.38 | +1.8 |
Or see this region's nucleotide sequence