Strain Fitness in Escherichia coli BW25113 around b4288

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfecE and fecD are separated by 0 nucleotidesfecD and fecC overlap by 4 nucleotidesfecC and fecB overlap by 4 nucleotides b4287: fecE - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,508,713 to 4,509,480 fecE b4288: fecD - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,509,481 to 4,510,437 fecD b4289: fecC - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,510,434 to 4,511,432 fecC b4290: fecB - citrate-dependent iron transport, periplasmic protein (VIMSS), at 4,511,429 to 4,512,331 fecB Position (kb) 4509 4510 4511Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4508.503 kb on - strandat 4508.503 kb on - strandat 4508.544 kb on - strandat 4508.546 kb on + strandat 4508.549 kb on - strandat 4508.549 kb on - strandat 4508.561 kb on + strandat 4508.562 kb on + strandat 4508.591 kb on + strandat 4508.591 kb on + strandat 4508.603 kb on + strandat 4508.640 kb on - strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.714 kb on - strandat 4508.714 kb on - strandat 4508.714 kb on - strandat 4508.801 kb on - strand, within fecEat 4508.835 kb on - strand, within fecEat 4508.835 kb on - strand, within fecEat 4508.837 kb on - strand, within fecEat 4508.891 kb on - strand, within fecEat 4508.893 kb on + strand, within fecEat 4508.923 kb on + strand, within fecEat 4508.923 kb on + strand, within fecEat 4508.953 kb on + strand, within fecEat 4508.953 kb on + strand, within fecEat 4508.966 kb on - strand, within fecEat 4509.005 kb on - strand, within fecEat 4509.016 kb on - strand, within fecEat 4509.016 kb on - strand, within fecEat 4509.021 kb on - strand, within fecEat 4509.021 kb on - strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.154 kb on + strand, within fecEat 4509.162 kb on - strand, within fecEat 4509.162 kb on - strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.202 kb on - strand, within fecEat 4509.221 kb on + strand, within fecEat 4509.239 kb on - strand, within fecEat 4509.239 kb on - strand, within fecEat 4509.321 kb on - strand, within fecEat 4509.369 kb on + strand, within fecEat 4509.376 kb on + strand, within fecEat 4509.376 kb on + strand, within fecEat 4509.379 kb on + strand, within fecEat 4509.392 kb on - strand, within fecEat 4509.412 kb on + strandat 4509.429 kb on - strandat 4509.429 kb on - strandat 4509.441 kb on + strandat 4509.498 kb on - strandat 4509.619 kb on - strand, within fecDat 4509.635 kb on + strand, within fecDat 4509.654 kb on + strand, within fecDat 4509.671 kb on + strand, within fecDat 4509.671 kb on + strand, within fecDat 4509.672 kb on - strand, within fecDat 4509.673 kb on + strand, within fecDat 4509.673 kb on + strand, within fecDat 4509.685 kb on - strand, within fecDat 4509.685 kb on - strand, within fecDat 4509.690 kb on + strand, within fecDat 4509.698 kb on - strand, within fecDat 4509.698 kb on - strand, within fecDat 4509.821 kb on - strand, within fecDat 4509.909 kb on + strand, within fecDat 4509.926 kb on + strand, within fecDat 4510.001 kb on + strand, within fecDat 4510.028 kb on - strand, within fecDat 4510.102 kb on + strand, within fecDat 4510.118 kb on + strand, within fecDat 4510.118 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.170 kb on + strand, within fecDat 4510.170 kb on + strand, within fecDat 4510.178 kb on - strand, within fecDat 4510.203 kb on - strand, within fecDat 4510.203 kb on - strand, within fecDat 4510.212 kb on - strand, within fecDat 4510.255 kb on + strand, within fecDat 4510.285 kb on - strand, within fecDat 4510.285 kb on - strand, within fecDat 4510.302 kb on - strand, within fecDat 4510.302 kb on - strand, within fecDat 4510.353 kb on + strandat 4510.376 kb on + strandat 4510.376 kb on + strandat 4510.381 kb on + strandat 4510.384 kb on - strandat 4510.401 kb on + strandat 4510.401 kb on - strandat 4510.410 kb on - strandat 4510.410 kb on - strandat 4510.471 kb on + strandat 4510.507 kb on + strandat 4510.546 kb on - strand, within fecCat 4510.546 kb on - strand, within fecCat 4510.578 kb on + strand, within fecCat 4510.580 kb on - strand, within fecCat 4510.581 kb on - strand, within fecCat 4510.617 kb on - strand, within fecCat 4510.642 kb on - strand, within fecCat 4510.642 kb on - strand, within fecCat 4510.685 kb on - strand, within fecCat 4510.687 kb on - strand, within fecCat 4510.692 kb on - strand, within fecCat 4510.702 kb on - strand, within fecCat 4510.702 kb on - strand, within fecCat 4510.707 kb on - strand, within fecCat 4510.711 kb on + strand, within fecCat 4510.729 kb on - strand, within fecCat 4510.743 kb on - strand, within fecCat 4510.745 kb on + strand, within fecCat 4510.745 kb on + strand, within fecCat 4510.748 kb on + strand, within fecCat 4510.748 kb on + strand, within fecCat 4510.750 kb on - strand, within fecCat 4510.750 kb on - strand, within fecCat 4510.783 kb on - strand, within fecCat 4510.800 kb on + strand, within fecCat 4510.805 kb on - strand, within fecCat 4510.819 kb on - strand, within fecCat 4510.821 kb on - strand, within fecCat 4510.836 kb on + strand, within fecCat 4510.836 kb on - strand, within fecCat 4510.836 kb on - strand, within fecCat 4510.852 kb on - strand, within fecCat 4510.868 kb on + strand, within fecCat 4510.979 kb on + strand, within fecCat 4510.979 kb on + strand, within fecCat 4511.022 kb on + strand, within fecCat 4511.022 kb on + strand, within fecCat 4511.080 kb on - strand, within fecCat 4511.080 kb on - strand, within fecCat 4511.081 kb on - strand, within fecCat 4511.090 kb on + strand, within fecCat 4511.121 kb on + strand, within fecCat 4511.121 kb on + strand, within fecCat 4511.153 kb on + strand, within fecCat 4511.153 kb on + strand, within fecCat 4511.153 kb on + strand, within fecCat 4511.161 kb on - strand, within fecCat 4511.192 kb on - strand, within fecCat 4511.248 kb on - strand, within fecCat 4511.270 kb on + strand, within fecCat 4511.270 kb on + strand, within fecCat 4511.290 kb on - strand, within fecCat 4511.290 kb on - strand, within fecCat 4511.293 kb on + strand, within fecCat 4511.293 kb on + strand, within fecCat 4511.339 kb on + strandat 4511.403 kb on - strandat 4511.405 kb on + strandat 4511.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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4,508,503 - -0.8
4,508,503 - +2.4
4,508,544 - -0.0
4,508,546 + +0.6
4,508,549 - -0.4
4,508,549 - +0.6
4,508,561 + +0.6
4,508,562 + +1.1
4,508,591 + -1.0
4,508,591 + -0.4
4,508,603 + -0.8
4,508,640 - +2.1
4,508,701 + -0.2
4,508,701 + -0.1
4,508,714 - -0.4
4,508,714 - +0.6
4,508,714 - +1.4
4,508,801 - fecE b4287 0.11 +1.6
4,508,835 - fecE b4287 0.16 +2.1
4,508,835 - fecE b4287 0.16 +1.8
4,508,837 - fecE b4287 0.16 +1.4
4,508,891 - fecE b4287 0.23 +1.0
4,508,893 + fecE b4287 0.23 +0.6
4,508,923 + fecE b4287 0.27 +0.6
4,508,923 + fecE b4287 0.27 +0.6
4,508,953 + fecE b4287 0.31 -0.0
4,508,953 + fecE b4287 0.31 -0.4
4,508,966 - fecE b4287 0.33 +1.8
4,509,005 - fecE b4287 0.38 +2.7
4,509,016 - fecE b4287 0.39 +1.8
4,509,016 - fecE b4287 0.39 -1.4
4,509,021 - fecE b4287 0.40 +2.6
4,509,021 - fecE b4287 0.40 -0.4
4,509,103 + fecE b4287 0.51 +1.2
4,509,103 + fecE b4287 0.51 +2.2
4,509,103 + fecE b4287 0.51 +3.4
4,509,154 + fecE b4287 0.57 +1.3
4,509,162 - fecE b4287 0.58 +1.8
4,509,162 - fecE b4287 0.58 +1.8
4,509,196 + fecE b4287 0.63 +3.6
4,509,196 + fecE b4287 0.63 +0.8
4,509,196 + fecE b4287 0.63 +1.3
4,509,202 - fecE b4287 0.64 +1.8
4,509,221 + fecE b4287 0.66 +2.3
4,509,239 - fecE b4287 0.68 +1.3
4,509,239 - fecE b4287 0.68 +1.4
4,509,321 - fecE b4287 0.79 +1.3
4,509,369 + fecE b4287 0.85 +5.1
4,509,376 + fecE b4287 0.86 +1.3
4,509,376 + fecE b4287 0.86 +0.8
4,509,379 + fecE b4287 0.87 +1.3
4,509,392 - fecE b4287 0.88 +2.7
4,509,412 + +1.4
4,509,429 - +2.1
4,509,429 - +2.3
4,509,441 + +2.0
4,509,498 - +2.1
4,509,619 - fecD b4288 0.14 +1.1
4,509,635 + fecD b4288 0.16 -0.4
4,509,654 + fecD b4288 0.18 +1.6
4,509,671 + fecD b4288 0.20 +1.7
4,509,671 + fecD b4288 0.20 +1.1
4,509,672 - fecD b4288 0.20 +2.9
4,509,673 + fecD b4288 0.20 -0.4
4,509,673 + fecD b4288 0.20 +1.0
4,509,685 - fecD b4288 0.21 +1.3
4,509,685 - fecD b4288 0.21 +2.9
4,509,690 + fecD b4288 0.22 +0.7
4,509,698 - fecD b4288 0.23 -0.4
4,509,698 - fecD b4288 0.23 +3.8
4,509,821 - fecD b4288 0.36 +1.9
4,509,909 + fecD b4288 0.45 +0.9
4,509,926 + fecD b4288 0.46 +2.1
4,510,001 + fecD b4288 0.54 -1.4
4,510,028 - fecD b4288 0.57 +0.8
4,510,102 + fecD b4288 0.65 +2.1
4,510,118 + fecD b4288 0.67 +2.6
4,510,118 + fecD b4288 0.67 -0.4
4,510,143 + fecD b4288 0.69 +1.5
4,510,143 + fecD b4288 0.69 +2.6
4,510,143 + fecD b4288 0.69 +3.9
4,510,170 + fecD b4288 0.72 +2.6
4,510,170 + fecD b4288 0.72 +1.1
4,510,178 - fecD b4288 0.73 +2.0
4,510,203 - fecD b4288 0.75 +0.4
4,510,203 - fecD b4288 0.75 +1.7
4,510,212 - fecD b4288 0.76 +1.4
4,510,255 + fecD b4288 0.81 +1.6
4,510,285 - fecD b4288 0.84 +0.5
4,510,285 - fecD b4288 0.84 +1.6
4,510,302 - fecD b4288 0.86 +2.3
4,510,302 - fecD b4288 0.86 +1.1
4,510,353 + +0.6
4,510,376 + +0.8
4,510,376 + +3.4
4,510,381 + +1.3
4,510,384 - +1.1
4,510,401 + +1.7
4,510,401 - +1.1
4,510,410 - +0.8
4,510,410 - +1.9
4,510,471 + +2.3
4,510,507 + +1.5
4,510,546 - fecC b4289 0.11 +2.1
4,510,546 - fecC b4289 0.11 +1.9
4,510,578 + fecC b4289 0.14 +0.8
4,510,580 - fecC b4289 0.15 +1.1
4,510,581 - fecC b4289 0.15 +1.7
4,510,617 - fecC b4289 0.18 +2.4
4,510,642 - fecC b4289 0.21 +1.8
4,510,642 - fecC b4289 0.21 +1.8
4,510,685 - fecC b4289 0.25 +0.6
4,510,687 - fecC b4289 0.25 +1.6
4,510,692 - fecC b4289 0.26 +0.8
4,510,702 - fecC b4289 0.27 +2.3
4,510,702 - fecC b4289 0.27 +2.3
4,510,707 - fecC b4289 0.27 +2.7
4,510,711 + fecC b4289 0.28 +1.8
4,510,729 - fecC b4289 0.30 -0.4
4,510,743 - fecC b4289 0.31 +1.6
4,510,745 + fecC b4289 0.31 +0.4
4,510,745 + fecC b4289 0.31 +2.0
4,510,748 + fecC b4289 0.31 +2.1
4,510,748 + fecC b4289 0.31 +2.7
4,510,750 - fecC b4289 0.32 +1.6
4,510,750 - fecC b4289 0.32 +1.9
4,510,783 - fecC b4289 0.35 +1.4
4,510,800 + fecC b4289 0.37 +2.1
4,510,805 - fecC b4289 0.37 -0.4
4,510,819 - fecC b4289 0.39 +1.7
4,510,821 - fecC b4289 0.39 +2.9
4,510,836 + fecC b4289 0.40 +2.0
4,510,836 - fecC b4289 0.40 +2.0
4,510,836 - fecC b4289 0.40 +0.6
4,510,852 - fecC b4289 0.42 -0.0
4,510,868 + fecC b4289 0.43 -0.8
4,510,979 + fecC b4289 0.55 +1.8
4,510,979 + fecC b4289 0.55 +1.8
4,511,022 + fecC b4289 0.59 +1.8
4,511,022 + fecC b4289 0.59 +3.4
4,511,080 - fecC b4289 0.65 +0.6
4,511,080 - fecC b4289 0.65 +2.9
4,511,081 - fecC b4289 0.65 +0.8
4,511,090 + fecC b4289 0.66 +0.6
4,511,121 + fecC b4289 0.69 +1.1
4,511,121 + fecC b4289 0.69 +2.0
4,511,153 + fecC b4289 0.72 +2.1
4,511,153 + fecC b4289 0.72 +2.4
4,511,153 + fecC b4289 0.72 +2.7
4,511,161 - fecC b4289 0.73 +1.1
4,511,192 - fecC b4289 0.76 +2.0
4,511,248 - fecC b4289 0.81 +2.4
4,511,270 + fecC b4289 0.84 -1.0
4,511,270 + fecC b4289 0.84 +1.0
4,511,290 - fecC b4289 0.86 +1.9
4,511,290 - fecC b4289 0.86 +2.3
4,511,293 + fecC b4289 0.86 +0.9
4,511,293 + fecC b4289 0.86 +2.0
4,511,339 + +2.0
4,511,403 - +1.1
4,511,405 + +2.5
4,511,406 - -1.4

Or see this region's nucleotide sequence