Strain Fitness in Escherichia coli BW25113 around b4287

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjhV and fecE are separated by 556 nucleotidesfecE and fecD are separated by 0 nucleotidesfecD and fecC overlap by 4 nucleotides b4286: yjhV - KpLE2 phage-like element; predicted protein (RefSeq), at 4,507,827 to 4,508,156 yjhV b4287: fecE - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,508,713 to 4,509,480 fecE b4288: fecD - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,509,481 to 4,510,437 fecD b4289: fecC - KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI), at 4,510,434 to 4,511,432 fecC Position (kb) 4508 4509 4510Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4507.722 kb on - strandat 4507.730 kb on - strandat 4507.730 kb on - strandat 4507.738 kb on - strandat 4507.738 kb on - strandat 4507.833 kb on + strandat 4507.882 kb on + strand, within yjhVat 4507.890 kb on - strand, within yjhVat 4507.890 kb on - strand, within yjhVat 4507.890 kb on - strand, within yjhVat 4507.895 kb on - strand, within yjhVat 4507.895 kb on - strand, within yjhVat 4507.907 kb on + strand, within yjhVat 4507.907 kb on + strand, within yjhVat 4507.907 kb on + strand, within yjhVat 4507.907 kb on + strand, within yjhVat 4507.978 kb on - strand, within yjhVat 4507.978 kb on - strand, within yjhVat 4507.980 kb on - strand, within yjhVat 4507.985 kb on + strand, within yjhVat 4507.985 kb on + strand, within yjhVat 4508.005 kb on - strand, within yjhVat 4508.008 kb on + strand, within yjhVat 4508.151 kb on + strandat 4508.360 kb on - strandat 4508.478 kb on + strandat 4508.478 kb on + strandat 4508.503 kb on - strandat 4508.503 kb on - strandat 4508.544 kb on - strandat 4508.546 kb on + strandat 4508.549 kb on - strandat 4508.549 kb on - strandat 4508.561 kb on + strandat 4508.562 kb on + strandat 4508.591 kb on + strandat 4508.591 kb on + strandat 4508.603 kb on + strandat 4508.640 kb on - strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.714 kb on - strandat 4508.714 kb on - strandat 4508.714 kb on - strandat 4508.801 kb on - strand, within fecEat 4508.835 kb on - strand, within fecEat 4508.835 kb on - strand, within fecEat 4508.837 kb on - strand, within fecEat 4508.891 kb on - strand, within fecEat 4508.893 kb on + strand, within fecEat 4508.923 kb on + strand, within fecEat 4508.923 kb on + strand, within fecEat 4508.953 kb on + strand, within fecEat 4508.953 kb on + strand, within fecEat 4508.966 kb on - strand, within fecEat 4509.005 kb on - strand, within fecEat 4509.016 kb on - strand, within fecEat 4509.016 kb on - strand, within fecEat 4509.021 kb on - strand, within fecEat 4509.021 kb on - strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.103 kb on + strand, within fecEat 4509.154 kb on + strand, within fecEat 4509.162 kb on - strand, within fecEat 4509.162 kb on - strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.196 kb on + strand, within fecEat 4509.202 kb on - strand, within fecEat 4509.221 kb on + strand, within fecEat 4509.239 kb on - strand, within fecEat 4509.239 kb on - strand, within fecEat 4509.321 kb on - strand, within fecEat 4509.369 kb on + strand, within fecEat 4509.376 kb on + strand, within fecEat 4509.376 kb on + strand, within fecEat 4509.379 kb on + strand, within fecEat 4509.392 kb on - strand, within fecEat 4509.412 kb on + strandat 4509.429 kb on - strandat 4509.429 kb on - strandat 4509.441 kb on + strandat 4509.498 kb on - strandat 4509.619 kb on - strand, within fecDat 4509.635 kb on + strand, within fecDat 4509.654 kb on + strand, within fecDat 4509.671 kb on + strand, within fecDat 4509.671 kb on + strand, within fecDat 4509.672 kb on - strand, within fecDat 4509.673 kb on + strand, within fecDat 4509.673 kb on + strand, within fecDat 4509.685 kb on - strand, within fecDat 4509.685 kb on - strand, within fecDat 4509.690 kb on + strand, within fecDat 4509.698 kb on - strand, within fecDat 4509.698 kb on - strand, within fecDat 4509.821 kb on - strand, within fecDat 4509.909 kb on + strand, within fecDat 4509.926 kb on + strand, within fecDat 4510.001 kb on + strand, within fecDat 4510.028 kb on - strand, within fecDat 4510.102 kb on + strand, within fecDat 4510.118 kb on + strand, within fecDat 4510.118 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.143 kb on + strand, within fecDat 4510.170 kb on + strand, within fecDat 4510.170 kb on + strand, within fecDat 4510.178 kb on - strand, within fecDat 4510.203 kb on - strand, within fecDat 4510.203 kb on - strand, within fecDat 4510.212 kb on - strand, within fecDat 4510.255 kb on + strand, within fecDat 4510.285 kb on - strand, within fecDat 4510.285 kb on - strand, within fecDat 4510.302 kb on - strand, within fecDat 4510.302 kb on - strand, within fecDat 4510.353 kb on + strandat 4510.376 kb on + strandat 4510.376 kb on + strandat 4510.381 kb on + strandat 4510.384 kb on - strandat 4510.401 kb on + strandat 4510.401 kb on - strandat 4510.410 kb on - strandat 4510.410 kb on - strandat 4510.471 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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4,507,722 - +0.2
4,507,730 - +2.1
4,507,730 - +0.1
4,507,738 - +0.1
4,507,738 - -0.4
4,507,833 + -0.7
4,507,882 + yjhV b4286 0.17 -0.0
4,507,890 - yjhV b4286 0.19 +0.1
4,507,890 - yjhV b4286 0.19 -2.3
4,507,890 - yjhV b4286 0.19 -1.4
4,507,895 - yjhV b4286 0.21 +0.1
4,507,895 - yjhV b4286 0.21 +0.6
4,507,907 + yjhV b4286 0.24 -1.0
4,507,907 + yjhV b4286 0.24 +1.6
4,507,907 + yjhV b4286 0.24 +0.2
4,507,907 + yjhV b4286 0.24 -0.9
4,507,978 - yjhV b4286 0.46 +1.6
4,507,978 - yjhV b4286 0.46 -1.0
4,507,980 - yjhV b4286 0.46 +0.3
4,507,985 + yjhV b4286 0.48 -1.0
4,507,985 + yjhV b4286 0.48 -0.4
4,508,005 - yjhV b4286 0.54 -2.3
4,508,008 + yjhV b4286 0.55 -0.4
4,508,151 + -0.0
4,508,360 - +0.6
4,508,478 + +1.2
4,508,478 + +0.6
4,508,503 - -0.8
4,508,503 - +2.4
4,508,544 - -0.0
4,508,546 + +0.6
4,508,549 - -0.4
4,508,549 - +0.6
4,508,561 + +0.6
4,508,562 + +1.1
4,508,591 + -1.0
4,508,591 + -0.4
4,508,603 + -0.8
4,508,640 - +2.1
4,508,701 + -0.2
4,508,701 + -0.1
4,508,714 - -0.4
4,508,714 - +0.6
4,508,714 - +1.4
4,508,801 - fecE b4287 0.11 +1.6
4,508,835 - fecE b4287 0.16 +2.1
4,508,835 - fecE b4287 0.16 +1.8
4,508,837 - fecE b4287 0.16 +1.4
4,508,891 - fecE b4287 0.23 +1.0
4,508,893 + fecE b4287 0.23 +0.6
4,508,923 + fecE b4287 0.27 +0.6
4,508,923 + fecE b4287 0.27 +0.6
4,508,953 + fecE b4287 0.31 -0.0
4,508,953 + fecE b4287 0.31 -0.4
4,508,966 - fecE b4287 0.33 +1.8
4,509,005 - fecE b4287 0.38 +2.7
4,509,016 - fecE b4287 0.39 +1.8
4,509,016 - fecE b4287 0.39 -1.4
4,509,021 - fecE b4287 0.40 +2.6
4,509,021 - fecE b4287 0.40 -0.4
4,509,103 + fecE b4287 0.51 +1.2
4,509,103 + fecE b4287 0.51 +2.2
4,509,103 + fecE b4287 0.51 +3.4
4,509,154 + fecE b4287 0.57 +1.3
4,509,162 - fecE b4287 0.58 +1.8
4,509,162 - fecE b4287 0.58 +1.8
4,509,196 + fecE b4287 0.63 +3.6
4,509,196 + fecE b4287 0.63 +0.8
4,509,196 + fecE b4287 0.63 +1.3
4,509,202 - fecE b4287 0.64 +1.8
4,509,221 + fecE b4287 0.66 +2.3
4,509,239 - fecE b4287 0.68 +1.3
4,509,239 - fecE b4287 0.68 +1.4
4,509,321 - fecE b4287 0.79 +1.3
4,509,369 + fecE b4287 0.85 +5.1
4,509,376 + fecE b4287 0.86 +1.3
4,509,376 + fecE b4287 0.86 +0.8
4,509,379 + fecE b4287 0.87 +1.3
4,509,392 - fecE b4287 0.88 +2.7
4,509,412 + +1.4
4,509,429 - +2.1
4,509,429 - +2.3
4,509,441 + +2.0
4,509,498 - +2.1
4,509,619 - fecD b4288 0.14 +1.1
4,509,635 + fecD b4288 0.16 -0.4
4,509,654 + fecD b4288 0.18 +1.6
4,509,671 + fecD b4288 0.20 +1.7
4,509,671 + fecD b4288 0.20 +1.1
4,509,672 - fecD b4288 0.20 +2.9
4,509,673 + fecD b4288 0.20 -0.4
4,509,673 + fecD b4288 0.20 +1.0
4,509,685 - fecD b4288 0.21 +1.3
4,509,685 - fecD b4288 0.21 +2.9
4,509,690 + fecD b4288 0.22 +0.7
4,509,698 - fecD b4288 0.23 -0.4
4,509,698 - fecD b4288 0.23 +3.8
4,509,821 - fecD b4288 0.36 +1.9
4,509,909 + fecD b4288 0.45 +0.9
4,509,926 + fecD b4288 0.46 +2.1
4,510,001 + fecD b4288 0.54 -1.4
4,510,028 - fecD b4288 0.57 +0.8
4,510,102 + fecD b4288 0.65 +2.1
4,510,118 + fecD b4288 0.67 +2.6
4,510,118 + fecD b4288 0.67 -0.4
4,510,143 + fecD b4288 0.69 +1.5
4,510,143 + fecD b4288 0.69 +2.6
4,510,143 + fecD b4288 0.69 +3.9
4,510,170 + fecD b4288 0.72 +2.6
4,510,170 + fecD b4288 0.72 +1.1
4,510,178 - fecD b4288 0.73 +2.0
4,510,203 - fecD b4288 0.75 +0.4
4,510,203 - fecD b4288 0.75 +1.7
4,510,212 - fecD b4288 0.76 +1.4
4,510,255 + fecD b4288 0.81 +1.6
4,510,285 - fecD b4288 0.84 +0.5
4,510,285 - fecD b4288 0.84 +1.6
4,510,302 - fecD b4288 0.86 +2.3
4,510,302 - fecD b4288 0.86 +1.1
4,510,353 + +0.6
4,510,376 + +0.8
4,510,376 + +3.4
4,510,381 + +1.3
4,510,384 - +1.1
4,510,401 + +1.7
4,510,401 - +1.1
4,510,410 - +0.8
4,510,410 - +1.9
4,510,471 + +2.3

Or see this region's nucleotide sequence