Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfG and ytfH are separated by 88 nucleotides ytfH and cpdB are separated by 128 nucleotides
b4211: ytfG - NAD(P)H:quinone oxidoreductase (NCBI), at 4,431,187 to 4,432,047
ytfG
b4212: ytfH - orf, hypothetical protein (VIMSS), at 4,432,136 to 4,432,516
ytfH
b4213: cpdB - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI), at 4,432,645 to 4,434,588
cpdB
Position (kb)
4432
4433 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4431.169 kb on - strand at 4431.219 kb on - strand at 4431.290 kb on - strand, within ytfG at 4431.332 kb on + strand, within ytfG at 4431.350 kb on - strand, within ytfG at 4431.350 kb on - strand, within ytfG at 4431.448 kb on - strand, within ytfG at 4431.458 kb on + strand, within ytfG at 4431.498 kb on + strand, within ytfG at 4431.498 kb on + strand, within ytfG at 4431.657 kb on - strand, within ytfG at 4431.749 kb on - strand, within ytfG at 4431.881 kb on - strand, within ytfG at 4431.954 kb on - strand, within ytfG at 4431.958 kb on + strand, within ytfG at 4432.182 kb on + strand, within ytfH at 4432.182 kb on + strand, within ytfH at 4432.247 kb on - strand, within ytfH at 4432.330 kb on + strand, within ytfH at 4432.330 kb on + strand, within ytfH at 4432.358 kb on + strand, within ytfH at 4432.377 kb on + strand, within ytfH at 4432.377 kb on + strand, within ytfH at 4432.402 kb on + strand, within ytfH at 4432.407 kb on + strand, within ytfH at 4432.441 kb on - strand, within ytfH at 4432.482 kb on + strand at 4432.498 kb on + strand at 4432.531 kb on + strand at 4432.572 kb on - strand at 4432.648 kb on - strand at 4432.659 kb on - strand at 4432.659 kb on - strand at 4432.717 kb on + strand at 4432.719 kb on - strand at 4432.719 kb on - strand at 4432.741 kb on + strand at 4432.847 kb on + strand, within cpdB at 4432.847 kb on + strand, within cpdB at 4432.855 kb on + strand, within cpdB at 4432.855 kb on + strand, within cpdB at 4432.874 kb on + strand, within cpdB at 4432.881 kb on - strand, within cpdB at 4432.881 kb on - strand, within cpdB at 4432.902 kb on + strand, within cpdB at 4432.913 kb on + strand, within cpdB at 4433.022 kb on + strand, within cpdB at 4433.051 kb on + strand, within cpdB at 4433.110 kb on + strand, within cpdB at 4433.110 kb on + strand, within cpdB at 4433.149 kb on + strand, within cpdB at 4433.149 kb on + strand, within cpdB at 4433.157 kb on - strand, within cpdB at 4433.157 kb on - strand, within cpdB at 4433.288 kb on + strand, within cpdB at 4433.365 kb on - strand, within cpdB at 4433.365 kb on - strand, within cpdB at 4433.410 kb on + strand, within cpdB at 4433.410 kb on + strand, within cpdB at 4433.410 kb on + strand, within cpdB at 4433.419 kb on - strand, within cpdB at 4433.419 kb on - strand, within cpdB at 4433.429 kb on + strand, within cpdB at 4433.429 kb on + strand, within cpdB at 4433.486 kb on - strand, within cpdB at 4433.499 kb on + strand, within cpdB at 4433.499 kb on + strand, within cpdB at 4433.502 kb on - strand, within cpdB at 4433.502 kb on - strand, within cpdB at 4433.502 kb on - strand, within cpdB
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 4,431,169 - -1.4 4,431,219 - +0.6 4,431,290 - ytfG b4211 0.12 -0.1 4,431,332 + ytfG b4211 0.17 +0.9 4,431,350 - ytfG b4211 0.19 +2.2 4,431,350 - ytfG b4211 0.19 +0.6 4,431,448 - ytfG b4211 0.30 -0.2 4,431,458 + ytfG b4211 0.31 -0.7 4,431,498 + ytfG b4211 0.36 -0.3 4,431,498 + ytfG b4211 0.36 +1.1 4,431,657 - ytfG b4211 0.55 +0.9 4,431,749 - ytfG b4211 0.65 +1.0 4,431,881 - ytfG b4211 0.81 -0.2 4,431,954 - ytfG b4211 0.89 -0.6 4,431,958 + ytfG b4211 0.90 +0.2 4,432,182 + ytfH b4212 0.12 -1.0 4,432,182 + ytfH b4212 0.12 -0.4 4,432,247 - ytfH b4212 0.29 -1.0 4,432,330 + ytfH b4212 0.51 -0.6 4,432,330 + ytfH b4212 0.51 -1.4 4,432,358 + ytfH b4212 0.58 -0.4 4,432,377 + ytfH b4212 0.63 -0.0 4,432,377 + ytfH b4212 0.63 -1.0 4,432,402 + ytfH b4212 0.70 -0.2 4,432,407 + ytfH b4212 0.71 +1.6 4,432,441 - ytfH b4212 0.80 -2.0 4,432,482 + +0.1 4,432,498 + -0.6 4,432,531 + -0.4 4,432,572 - +2.6 4,432,648 - +1.4 4,432,659 - -0.7 4,432,659 - -0.7 4,432,717 + +3.9 4,432,719 - +0.6 4,432,719 - -0.0 4,432,741 + -0.7 4,432,847 + cpdB b4213 0.10 -1.4 4,432,847 + cpdB b4213 0.10 +0.6 4,432,855 + cpdB b4213 0.11 +2.6 4,432,855 + cpdB b4213 0.11 -1.0 4,432,874 + cpdB b4213 0.12 -0.9 4,432,881 - cpdB b4213 0.12 -1.0 4,432,881 - cpdB b4213 0.12 -1.0 4,432,902 + cpdB b4213 0.13 -1.4 4,432,913 + cpdB b4213 0.14 -0.6 4,433,022 + cpdB b4213 0.19 -0.3 4,433,051 + cpdB b4213 0.21 -0.7 4,433,110 + cpdB b4213 0.24 -0.4 4,433,110 + cpdB b4213 0.24 +0.1 4,433,149 + cpdB b4213 0.26 +1.0 4,433,149 + cpdB b4213 0.26 +0.6 4,433,157 - cpdB b4213 0.26 +0.6 4,433,157 - cpdB b4213 0.26 +0.6 4,433,288 + cpdB b4213 0.33 +0.3 4,433,365 - cpdB b4213 0.37 +2.2 4,433,365 - cpdB b4213 0.37 -0.8 4,433,410 + cpdB b4213 0.39 +2.4 4,433,410 + cpdB b4213 0.39 +0.4 4,433,410 + cpdB b4213 0.39 +0.3 4,433,419 - cpdB b4213 0.40 -0.2 4,433,419 - cpdB b4213 0.40 +1.9 4,433,429 + cpdB b4213 0.40 -0.0 4,433,429 + cpdB b4213 0.40 +0.9 4,433,486 - cpdB b4213 0.43 -0.7 4,433,499 + cpdB b4213 0.44 -1.7 4,433,499 + cpdB b4213 0.44 -1.0 4,433,502 - cpdB b4213 0.44 -0.4 4,433,502 - cpdB b4213 0.44 +1.6 4,433,502 - cpdB b4213 0.44 +2.6
Or see this region's nucleotide sequence