Strain Fitness in Escherichia coli BW25113 around b4212

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntytfG and ytfH are separated by 88 nucleotidesytfH and cpdB are separated by 128 nucleotides b4211: ytfG - NAD(P)H:quinone oxidoreductase (NCBI), at 4,431,187 to 4,432,047 ytfG b4212: ytfH - orf, hypothetical protein (VIMSS), at 4,432,136 to 4,432,516 ytfH b4213: cpdB - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI), at 4,432,645 to 4,434,588 cpdB Position (kb) 4432 4433Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4431.169 kb on - strandat 4431.219 kb on - strandat 4431.290 kb on - strand, within ytfGat 4431.332 kb on + strand, within ytfGat 4431.350 kb on - strand, within ytfGat 4431.350 kb on - strand, within ytfGat 4431.448 kb on - strand, within ytfGat 4431.458 kb on + strand, within ytfGat 4431.498 kb on + strand, within ytfGat 4431.498 kb on + strand, within ytfGat 4431.657 kb on - strand, within ytfGat 4431.749 kb on - strand, within ytfGat 4431.881 kb on - strand, within ytfGat 4431.954 kb on - strand, within ytfGat 4431.958 kb on + strand, within ytfGat 4432.182 kb on + strand, within ytfHat 4432.182 kb on + strand, within ytfHat 4432.247 kb on - strand, within ytfHat 4432.330 kb on + strand, within ytfHat 4432.330 kb on + strand, within ytfHat 4432.358 kb on + strand, within ytfHat 4432.377 kb on + strand, within ytfHat 4432.377 kb on + strand, within ytfHat 4432.402 kb on + strand, within ytfHat 4432.407 kb on + strand, within ytfHat 4432.441 kb on - strand, within ytfHat 4432.482 kb on + strandat 4432.498 kb on + strandat 4432.531 kb on + strandat 4432.572 kb on - strandat 4432.648 kb on - strandat 4432.659 kb on - strandat 4432.659 kb on - strandat 4432.717 kb on + strandat 4432.719 kb on - strandat 4432.719 kb on - strandat 4432.741 kb on + strandat 4432.847 kb on + strand, within cpdBat 4432.847 kb on + strand, within cpdBat 4432.855 kb on + strand, within cpdBat 4432.855 kb on + strand, within cpdBat 4432.874 kb on + strand, within cpdBat 4432.881 kb on - strand, within cpdBat 4432.881 kb on - strand, within cpdBat 4432.902 kb on + strand, within cpdBat 4432.913 kb on + strand, within cpdBat 4433.022 kb on + strand, within cpdBat 4433.051 kb on + strand, within cpdBat 4433.110 kb on + strand, within cpdBat 4433.110 kb on + strand, within cpdBat 4433.149 kb on + strand, within cpdBat 4433.149 kb on + strand, within cpdBat 4433.157 kb on - strand, within cpdBat 4433.157 kb on - strand, within cpdBat 4433.288 kb on + strand, within cpdBat 4433.365 kb on - strand, within cpdBat 4433.365 kb on - strand, within cpdBat 4433.410 kb on + strand, within cpdBat 4433.410 kb on + strand, within cpdBat 4433.410 kb on + strand, within cpdBat 4433.419 kb on - strand, within cpdBat 4433.419 kb on - strand, within cpdBat 4433.429 kb on + strand, within cpdBat 4433.429 kb on + strand, within cpdBat 4433.486 kb on - strand, within cpdBat 4433.499 kb on + strand, within cpdBat 4433.499 kb on + strand, within cpdBat 4433.502 kb on - strand, within cpdBat 4433.502 kb on - strand, within cpdBat 4433.502 kb on - strand, within cpdB

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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4,431,169 - -1.4
4,431,219 - +0.6
4,431,290 - ytfG b4211 0.12 -0.1
4,431,332 + ytfG b4211 0.17 +0.9
4,431,350 - ytfG b4211 0.19 +2.2
4,431,350 - ytfG b4211 0.19 +0.6
4,431,448 - ytfG b4211 0.30 -0.2
4,431,458 + ytfG b4211 0.31 -0.7
4,431,498 + ytfG b4211 0.36 -0.3
4,431,498 + ytfG b4211 0.36 +1.1
4,431,657 - ytfG b4211 0.55 +0.9
4,431,749 - ytfG b4211 0.65 +1.0
4,431,881 - ytfG b4211 0.81 -0.2
4,431,954 - ytfG b4211 0.89 -0.6
4,431,958 + ytfG b4211 0.90 +0.2
4,432,182 + ytfH b4212 0.12 -1.0
4,432,182 + ytfH b4212 0.12 -0.4
4,432,247 - ytfH b4212 0.29 -1.0
4,432,330 + ytfH b4212 0.51 -0.6
4,432,330 + ytfH b4212 0.51 -1.4
4,432,358 + ytfH b4212 0.58 -0.4
4,432,377 + ytfH b4212 0.63 -0.0
4,432,377 + ytfH b4212 0.63 -1.0
4,432,402 + ytfH b4212 0.70 -0.2
4,432,407 + ytfH b4212 0.71 +1.6
4,432,441 - ytfH b4212 0.80 -2.0
4,432,482 + +0.1
4,432,498 + -0.6
4,432,531 + -0.4
4,432,572 - +2.6
4,432,648 - +1.4
4,432,659 - -0.7
4,432,659 - -0.7
4,432,717 + +3.9
4,432,719 - +0.6
4,432,719 - -0.0
4,432,741 + -0.7
4,432,847 + cpdB b4213 0.10 -1.4
4,432,847 + cpdB b4213 0.10 +0.6
4,432,855 + cpdB b4213 0.11 +2.6
4,432,855 + cpdB b4213 0.11 -1.0
4,432,874 + cpdB b4213 0.12 -0.9
4,432,881 - cpdB b4213 0.12 -1.0
4,432,881 - cpdB b4213 0.12 -1.0
4,432,902 + cpdB b4213 0.13 -1.4
4,432,913 + cpdB b4213 0.14 -0.6
4,433,022 + cpdB b4213 0.19 -0.3
4,433,051 + cpdB b4213 0.21 -0.7
4,433,110 + cpdB b4213 0.24 -0.4
4,433,110 + cpdB b4213 0.24 +0.1
4,433,149 + cpdB b4213 0.26 +1.0
4,433,149 + cpdB b4213 0.26 +0.6
4,433,157 - cpdB b4213 0.26 +0.6
4,433,157 - cpdB b4213 0.26 +0.6
4,433,288 + cpdB b4213 0.33 +0.3
4,433,365 - cpdB b4213 0.37 +2.2
4,433,365 - cpdB b4213 0.37 -0.8
4,433,410 + cpdB b4213 0.39 +2.4
4,433,410 + cpdB b4213 0.39 +0.4
4,433,410 + cpdB b4213 0.39 +0.3
4,433,419 - cpdB b4213 0.40 -0.2
4,433,419 - cpdB b4213 0.40 +1.9
4,433,429 + cpdB b4213 0.40 -0.0
4,433,429 + cpdB b4213 0.40 +0.9
4,433,486 - cpdB b4213 0.43 -0.7
4,433,499 + cpdB b4213 0.44 -1.7
4,433,499 + cpdB b4213 0.44 -1.0
4,433,502 - cpdB b4213 0.44 -0.4
4,433,502 - cpdB b4213 0.44 +1.6
4,433,502 - cpdB b4213 0.44 +2.6

Or see this region's nucleotide sequence