Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusA and yjbO are separated by 133 nucleotides yjbO and qor are separated by 165 nucleotides
b4049: dusA - tRNA-dihydrouridine synthase A (RefSeq), at 4,259,737 to 4,260,729
dusA
b4050: yjbO - orf, hypothetical protein (VIMSS), at 4,260,863 to 4,261,105
yjbO
b4051: qor - quinone oxidoreductase, NADPH-dependent (NCBI), at 4,261,271 to 4,262,254
qor
Position (kb)
4260
4261
4262 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4259.868 kb on + strand, within dusA at 4259.878 kb on - strand, within dusA at 4259.878 kb on - strand, within dusA at 4259.936 kb on + strand, within dusA at 4259.978 kb on + strand, within dusA at 4260.002 kb on + strand, within dusA at 4260.015 kb on - strand, within dusA at 4260.017 kb on + strand, within dusA at 4260.054 kb on - strand, within dusA at 4260.078 kb on + strand, within dusA at 4260.078 kb on + strand, within dusA at 4260.102 kb on - strand, within dusA at 4260.132 kb on - strand, within dusA at 4260.182 kb on + strand, within dusA at 4260.383 kb on + strand, within dusA at 4260.412 kb on + strand, within dusA at 4260.412 kb on + strand, within dusA at 4260.540 kb on + strand, within dusA at 4260.540 kb on + strand, within dusA at 4260.548 kb on - strand, within dusA at 4260.548 kb on - strand, within dusA at 4260.606 kb on - strand, within dusA at 4260.610 kb on + strand, within dusA at 4260.610 kb on + strand, within dusA at 4260.955 kb on - strand, within yjbO at 4260.955 kb on - strand, within yjbO at 4261.001 kb on - strand, within yjbO at 4261.009 kb on + strand, within yjbO at 4261.014 kb on - strand, within yjbO at 4261.014 kb on - strand, within yjbO at 4261.024 kb on - strand, within yjbO at 4261.103 kb on - strand at 4261.206 kb on + strand at 4261.211 kb on + strand at 4261.212 kb on - strand at 4261.226 kb on + strand at 4261.226 kb on + strand at 4261.255 kb on - strand at 4261.346 kb on - strand at 4261.346 kb on - strand at 4261.358 kb on - strand at 4261.358 kb on - strand at 4261.382 kb on - strand, within qor at 4261.382 kb on - strand, within qor at 4261.394 kb on - strand, within qor at 4261.406 kb on - strand, within qor at 4261.406 kb on - strand, within qor at 4261.478 kb on - strand, within qor at 4261.587 kb on + strand, within qor at 4261.593 kb on - strand, within qor at 4261.610 kb on + strand, within qor at 4261.698 kb on - strand, within qor at 4261.698 kb on - strand, within qor at 4261.955 kb on + strand, within qor at 4261.955 kb on - strand, within qor at 4261.977 kb on + strand, within qor at 4261.984 kb on - strand, within qor at 4261.991 kb on + strand, within qor at 4262.007 kb on - strand, within qor at 4262.007 kb on - strand, within qor at 4262.007 kb on - strand, within qor at 4262.042 kb on - strand, within qor at 4262.079 kb on - strand, within qor
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 4,259,868 + dusA b4049 0.13 +0.4 4,259,878 - dusA b4049 0.14 +0.3 4,259,878 - dusA b4049 0.14 -1.0 4,259,936 + dusA b4049 0.20 +0.4 4,259,978 + dusA b4049 0.24 +0.0 4,260,002 + dusA b4049 0.27 -0.6 4,260,015 - dusA b4049 0.28 -1.0 4,260,017 + dusA b4049 0.28 +1.0 4,260,054 - dusA b4049 0.32 -2.0 4,260,078 + dusA b4049 0.34 +0.0 4,260,078 + dusA b4049 0.34 +0.0 4,260,102 - dusA b4049 0.37 -1.5 4,260,132 - dusA b4049 0.40 +0.3 4,260,182 + dusA b4049 0.45 -0.7 4,260,383 + dusA b4049 0.65 -1.2 4,260,412 + dusA b4049 0.68 -0.4 4,260,412 + dusA b4049 0.68 +0.6 4,260,540 + dusA b4049 0.81 -3.0 4,260,540 + dusA b4049 0.81 +0.0 4,260,548 - dusA b4049 0.82 -1.8 4,260,548 - dusA b4049 0.82 +0.3 4,260,606 - dusA b4049 0.88 +1.4 4,260,610 + dusA b4049 0.88 +0.7 4,260,610 + dusA b4049 0.88 +0.3 4,260,955 - yjbO b4050 0.38 +0.9 4,260,955 - yjbO b4050 0.38 +1.6 4,261,001 - yjbO b4050 0.57 +1.1 4,261,009 + yjbO b4050 0.60 +0.6 4,261,014 - yjbO b4050 0.62 +1.9 4,261,014 - yjbO b4050 0.62 +0.6 4,261,024 - yjbO b4050 0.66 +0.9 4,261,103 - +0.6 4,261,206 + -1.5 4,261,211 + +1.0 4,261,212 - +0.8 4,261,226 + -0.0 4,261,226 + -0.4 4,261,255 - +0.0 4,261,346 - -1.0 4,261,346 - +0.1 4,261,358 - -1.0 4,261,358 - -0.4 4,261,382 - qor b4051 0.11 +1.6 4,261,382 - qor b4051 0.11 -0.8 4,261,394 - qor b4051 0.12 +0.6 4,261,406 - qor b4051 0.14 +1.4 4,261,406 - qor b4051 0.14 +0.2 4,261,478 - qor b4051 0.21 -1.0 4,261,587 + qor b4051 0.32 +0.4 4,261,593 - qor b4051 0.33 +1.4 4,261,610 + qor b4051 0.34 -0.4 4,261,698 - qor b4051 0.43 -0.7 4,261,698 - qor b4051 0.43 -0.5 4,261,955 + qor b4051 0.70 +0.6 4,261,955 - qor b4051 0.70 +2.0 4,261,977 + qor b4051 0.72 +0.9 4,261,984 - qor b4051 0.72 -0.0 4,261,991 + qor b4051 0.73 +0.3 4,262,007 - qor b4051 0.75 +0.2 4,262,007 - qor b4051 0.75 -1.0 4,262,007 - qor b4051 0.75 -0.3 4,262,042 - qor b4051 0.78 +0.6 4,262,079 - qor b4051 0.82 +0.2
Or see this region's nucleotide sequence