Strain Fitness in Escherichia coli BW25113 around b3519
Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chlorite 1.25 mM |
---|---|---|---|---|---|
remove | |||||
3,666,625 | + | yhjA | b3518 | 0.58 | -2.2 |
3,666,625 | + | yhjA | b3518 | 0.58 | +0.4 |
3,666,625 | + | yhjA | b3518 | 0.58 | -0.6 |
3,666,625 | - | yhjA | b3518 | 0.58 | +0.6 |
3,666,625 | - | yhjA | b3518 | 0.58 | +1.0 |
3,666,633 | - | yhjA | b3518 | 0.59 | +1.0 |
3,666,633 | - | yhjA | b3518 | 0.59 | -1.0 |
3,666,633 | - | yhjA | b3518 | 0.59 | +0.0 |
3,666,633 | - | yhjA | b3518 | 0.59 | +0.2 |
3,666,633 | - | yhjA | b3518 | 0.59 | -0.8 |
3,666,633 | - | yhjA | b3518 | 0.59 | -0.2 |
3,666,633 | - | yhjA | b3518 | 0.59 | +2.4 |
3,666,633 | - | yhjA | b3518 | 0.59 | -0.6 |
3,666,633 | - | yhjA | b3518 | 0.59 | +0.8 |
3,666,633 | - | yhjA | b3518 | 0.59 | -0.4 |
3,666,695 | - | yhjA | b3518 | 0.63 | +1.9 |
3,666,695 | - | yhjA | b3518 | 0.63 | -0.8 |
3,666,695 | - | yhjA | b3518 | 0.63 | +0.0 |
3,666,710 | + | yhjA | b3518 | 0.64 | -0.7 |
3,666,710 | + | yhjA | b3518 | 0.64 | -1.0 |
3,666,715 | + | yhjA | b3518 | 0.64 | +0.1 |
3,666,718 | - | yhjA | b3518 | 0.65 | +0.8 |
3,666,721 | + | yhjA | b3518 | 0.65 | -0.0 |
3,666,791 | - | yhjA | b3518 | 0.70 | -0.4 |
3,666,791 | - | yhjA | b3518 | 0.70 | -1.2 |
3,666,795 | + | yhjA | b3518 | 0.70 | +0.6 |
3,666,795 | + | yhjA | b3518 | 0.70 | -0.1 |
3,666,800 | + | yhjA | b3518 | 0.71 | -2.4 |
3,666,805 | + | yhjA | b3518 | 0.71 | +0.6 |
3,666,805 | + | yhjA | b3518 | 0.71 | +0.9 |
3,666,805 | + | yhjA | b3518 | 0.71 | -0.4 |
3,666,805 | + | yhjA | b3518 | 0.71 | -0.7 |
3,666,810 | + | yhjA | b3518 | 0.71 | +1.6 |
3,666,810 | + | yhjA | b3518 | 0.71 | +1.0 |
3,666,810 | + | yhjA | b3518 | 0.71 | +0.9 |
3,666,810 | + | yhjA | b3518 | 0.71 | +1.4 |
3,666,810 | + | yhjA | b3518 | 0.71 | -0.4 |
3,666,810 | + | yhjA | b3518 | 0.71 | -0.5 |
3,666,810 | + | yhjA | b3518 | 0.71 | +0.6 |
3,666,810 | + | yhjA | b3518 | 0.71 | -1.0 |
3,666,810 | + | yhjA | b3518 | 0.71 | +0.1 |
3,666,810 | + | yhjA | b3518 | 0.71 | -0.8 |
3,666,810 | + | yhjA | b3518 | 0.71 | +0.6 |
3,666,810 | + | yhjA | b3518 | 0.71 | -1.0 |
3,666,810 | + | yhjA | b3518 | 0.71 | -0.5 |
3,666,810 | + | yhjA | b3518 | 0.71 | -0.1 |
3,666,810 | + | yhjA | b3518 | 0.71 | +0.0 |
3,666,810 | + | yhjA | b3518 | 0.71 | -1.4 |
3,666,813 | - | yhjA | b3518 | 0.71 | +0.6 |
3,666,818 | - | yhjA | b3518 | 0.72 | -0.4 |
3,666,818 | - | yhjA | b3518 | 0.72 | +0.4 |
3,666,818 | - | yhjA | b3518 | 0.72 | +1.5 |
3,666,818 | - | yhjA | b3518 | 0.72 | +2.1 |
3,666,818 | - | yhjA | b3518 | 0.72 | +0.3 |
3,666,818 | - | yhjA | b3518 | 0.72 | -0.6 |
3,666,818 | - | yhjA | b3518 | 0.72 | +0.1 |
3,666,820 | + | yhjA | b3518 | 0.72 | +1.1 |
3,666,825 | - | yhjA | b3518 | 0.72 | -2.4 |
3,666,828 | - | yhjA | b3518 | 0.73 | -0.7 |
3,666,833 | + | yhjA | b3518 | 0.73 | +0.9 |
3,666,841 | + | yhjA | b3518 | 0.73 | +1.0 |
3,666,841 | + | yhjA | b3518 | 0.73 | -0.7 |
3,666,841 | + | yhjA | b3518 | 0.73 | -0.8 |
3,666,898 | + | yhjA | b3518 | 0.78 | +0.8 |
3,666,903 | + | yhjA | b3518 | 0.78 | -1.4 |
3,666,908 | + | yhjA | b3518 | 0.78 | -1.7 |
3,666,908 | + | yhjA | b3518 | 0.78 | +1.1 |
3,666,908 | - | yhjA | b3518 | 0.78 | -0.7 |
3,666,908 | - | yhjA | b3518 | 0.78 | +1.6 |
3,666,909 | - | yhjA | b3518 | 0.78 | +0.1 |
3,666,910 | + | yhjA | b3518 | 0.78 | -0.0 |
3,666,920 | - | yhjA | b3518 | 0.79 | +0.3 |
3,666,922 | + | yhjA | b3518 | 0.79 | -0.5 |
3,666,926 | - | yhjA | b3518 | 0.80 | +0.1 |
3,666,930 | - | yhjA | b3518 | 0.80 | -0.4 |
3,666,950 | + | yhjA | b3518 | 0.81 | -0.5 |
3,666,950 | + | yhjA | b3518 | 0.81 | +2.2 |
3,666,957 | + | yhjA | b3518 | 0.82 | -0.8 |
3,666,997 | - | yhjA | b3518 | 0.85 | +1.1 |
3,667,007 | + | yhjA | b3518 | 0.85 | -1.0 |
3,667,010 | - | yhjA | b3518 | 0.86 | +0.6 |
3,667,030 | - | yhjA | b3518 | 0.87 | +0.0 |
3,667,030 | - | yhjA | b3518 | 0.87 | -1.2 |
3,667,032 | - | yhjA | b3518 | 0.87 | +0.8 |
3,667,033 | - | yhjA | b3518 | 0.87 | +1.6 |
3,667,089 | + | +1.5 | |||
3,667,096 | + | +0.2 | |||
3,667,099 | - | +0.0 | |||
3,667,115 | + | +0.0 | |||
3,667,123 | + | -0.2 | |||
3,667,123 | + | +0.6 | |||
3,667,126 | + | +2.3 | |||
3,667,126 | + | -1.4 | |||
3,667,134 | + | +0.9 | |||
3,667,134 | + | -1.3 | |||
3,667,134 | + | +0.7 | |||
3,667,134 | + | +0.6 | |||
3,667,136 | - | -0.1 | |||
3,667,141 | - | -1.1 | |||
3,667,141 | - | -0.4 | |||
3,667,141 | - | +0.1 | |||
3,667,142 | - | -0.9 | |||
3,667,146 | - | +1.0 | |||
3,667,156 | - | -0.5 | |||
3,667,181 | - | +0.0 | |||
3,667,182 | + | +0.6 | |||
3,667,195 | + | +0.9 | |||
3,667,197 | - | +1.8 | |||
3,667,234 | + | -2.7 | |||
3,667,240 | - | +1.6 | |||
3,667,242 | - | +1.6 | |||
3,667,330 | + | -0.4 | |||
3,667,360 | + | -1.2 | |||
3,667,360 | + | +1.5 | |||
3,667,372 | + | -2.0 | |||
3,667,372 | + | +0.1 | |||
3,667,374 | + | +0.9 | |||
3,667,374 | + | +1.1 | |||
3,667,384 | + | -0.4 | |||
3,667,390 | + | +0.0 | |||
3,667,397 | - | +0.6 | |||
3,667,403 | + | +1.4 | |||
3,667,415 | + | -1.5 | |||
3,667,422 | + | -0.4 | |||
3,667,451 | - | -0.1 | |||
3,667,551 | + | +1.3 | |||
3,667,551 | + | -1.4 | |||
3,667,562 | - | -0.5 | |||
3,667,562 | - | -0.2 | |||
3,667,564 | + | +0.0 | |||
3,667,564 | + | +0.1 | |||
3,667,618 | - | -1.1 | |||
3,667,620 | - | +0.5 | |||
3,667,620 | - | +0.6 | |||
3,667,620 | - | +2.2 | |||
3,667,620 | - | -2.0 | |||
3,667,654 | - | +1.3 | |||
3,667,671 | + | +1.6 | |||
3,667,671 | + | -1.0 | |||
3,667,679 | - | +2.6 | |||
3,667,684 | - | -0.2 | |||
3,667,705 | - | -0.4 | |||
3,667,729 | - | -2.4 | |||
3,667,729 | - | +0.8 | |||
3,667,734 | + | -0.6 | |||
3,667,734 | + | -1.7 | |||
3,667,759 | + | -1.0 | |||
3,667,778 | - | -0.4 | |||
3,667,778 | - | -0.8 | |||
3,667,929 | + | treF | b3519 | 0.19 | -0.2 |
3,667,949 | + | treF | b3519 | 0.20 | -0.6 |
3,668,010 | + | treF | b3519 | 0.24 | -0.2 |
3,668,010 | + | treF | b3519 | 0.24 | +0.5 |
3,668,033 | - | treF | b3519 | 0.25 | -0.8 |
3,668,033 | - | treF | b3519 | 0.25 | -0.5 |
3,668,035 | + | treF | b3519 | 0.25 | +0.0 |
3,668,035 | + | treF | b3519 | 0.25 | +0.6 |
3,668,035 | + | treF | b3519 | 0.25 | -0.2 |
3,668,035 | + | treF | b3519 | 0.25 | -0.1 |
3,668,035 | + | treF | b3519 | 0.25 | -2.2 |
3,668,043 | - | treF | b3519 | 0.26 | -1.0 |
3,668,043 | - | treF | b3519 | 0.26 | +1.2 |
3,668,056 | - | treF | b3519 | 0.27 | -0.4 |
3,668,094 | + | treF | b3519 | 0.29 | -1.0 |
3,668,099 | + | treF | b3519 | 0.29 | +1.0 |
3,668,099 | + | treF | b3519 | 0.29 | -3.2 |
3,668,137 | - | treF | b3519 | 0.32 | +0.6 |
3,668,164 | - | treF | b3519 | 0.33 | +0.0 |
3,668,164 | - | treF | b3519 | 0.33 | +0.6 |
3,668,242 | - | treF | b3519 | 0.38 | -1.7 |
3,668,244 | + | treF | b3519 | 0.38 | +0.3 |
3,668,244 | + | treF | b3519 | 0.38 | +0.6 |
3,668,310 | - | treF | b3519 | 0.42 | +0.1 |
3,668,331 | + | treF | b3519 | 0.43 | +1.3 |
3,668,331 | + | treF | b3519 | 0.43 | -0.0 |
3,668,331 | + | treF | b3519 | 0.43 | -1.4 |
3,668,351 | - | treF | b3519 | 0.45 | +1.1 |
3,668,351 | - | treF | b3519 | 0.45 | +1.3 |
3,668,390 | + | treF | b3519 | 0.47 | -0.4 |
3,668,445 | - | treF | b3519 | 0.50 | -0.8 |
3,668,452 | + | treF | b3519 | 0.51 | +0.6 |
3,668,452 | + | treF | b3519 | 0.51 | -0.4 |
3,668,519 | + | treF | b3519 | 0.55 | +0.6 |
3,668,610 | + | treF | b3519 | 0.60 | +0.9 |
3,668,610 | + | treF | b3519 | 0.60 | -0.7 |
3,668,639 | + | treF | b3519 | 0.62 | +0.3 |
3,668,644 | + | treF | b3519 | 0.62 | +2.2 |
3,668,644 | + | treF | b3519 | 0.62 | -1.0 |
3,668,644 | + | treF | b3519 | 0.62 | +0.6 |
3,668,644 | + | treF | b3519 | 0.62 | +0.9 |
3,668,657 | + | treF | b3519 | 0.63 | +0.6 |
3,668,683 | + | treF | b3519 | 0.65 | +1.5 |
3,668,701 | + | treF | b3519 | 0.66 | +0.6 |
3,668,759 | + | treF | b3519 | 0.69 | +1.1 |
3,668,760 | - | treF | b3519 | 0.69 | -1.0 |
3,668,760 | - | treF | b3519 | 0.69 | +2.3 |
3,668,776 | + | treF | b3519 | 0.70 | -0.1 |
3,668,877 | + | treF | b3519 | 0.76 | +0.6 |
3,668,894 | - | treF | b3519 | 0.78 | +1.1 |
3,668,897 | + | treF | b3519 | 0.78 | -0.1 |
3,668,897 | + | treF | b3519 | 0.78 | -1.4 |
3,668,910 | - | treF | b3519 | 0.78 | +0.0 |
3,668,946 | - | treF | b3519 | 0.81 | +1.6 |
3,668,946 | - | treF | b3519 | 0.81 | +0.9 |
3,668,948 | - | treF | b3519 | 0.81 | -0.2 |
3,668,972 | - | treF | b3519 | 0.82 | +0.4 |
3,668,972 | - | treF | b3519 | 0.82 | +0.6 |
3,668,973 | + | treF | b3519 | 0.82 | -1.0 |
3,668,973 | + | treF | b3519 | 0.82 | +1.2 |
3,668,981 | + | treF | b3519 | 0.83 | +1.6 |
3,668,989 | - | treF | b3519 | 0.83 | +1.9 |
3,668,989 | - | treF | b3519 | 0.83 | -1.4 |
3,669,001 | + | treF | b3519 | 0.84 | -2.5 |
3,669,080 | - | treF | b3519 | 0.89 | +0.6 |
3,669,080 | - | treF | b3519 | 0.89 | +0.0 |
3,669,101 | + | +0.8 | |||
3,669,105 | + | -1.0 | |||
3,669,106 | + | +1.0 | |||
3,669,116 | + | -1.4 | |||
3,669,116 | + | +0.0 | |||
3,669,123 | - | -1.7 | |||
3,669,153 | + | -2.0 | |||
3,669,153 | + | +0.6 | |||
3,669,193 | + | +0.6 | |||
3,669,195 | + | -0.2 | |||
3,669,196 | + | +0.6 | |||
3,669,196 | + | +1.6 | |||
3,669,204 | - | +0.1 | |||
3,669,206 | + | +0.0 | |||
3,669,206 | + | -0.4 | |||
3,669,211 | + | +0.0 | |||
3,669,216 | + | +0.5 | |||
3,669,221 | + | +2.2 | |||
3,669,222 | + | -0.2 | |||
3,669,224 | + | +0.6 | |||
3,669,229 | - | +0.6 | |||
3,669,229 | - | -2.5 | |||
3,669,232 | - | -0.7 | |||
3,669,295 | - | -0.5 | |||
3,669,303 | + | +0.8 | |||
3,669,335 | - | +0.2 | |||
3,669,372 | + | +1.2 | |||
3,669,392 | - | yhjB | b3520 | 0.13 | +0.9 |
3,669,392 | - | yhjB | b3520 | 0.13 | +1.6 |
3,669,417 | - | yhjB | b3520 | 0.17 | +0.1 |
3,669,427 | - | yhjB | b3520 | 0.19 | +0.6 |
3,669,455 | + | yhjB | b3520 | 0.23 | +0.0 |
3,669,487 | - | yhjB | b3520 | 0.29 | -0.2 |
3,669,532 | + | yhjB | b3520 | 0.36 | +1.6 |
3,669,537 | + | yhjB | b3520 | 0.37 | +1.0 |
3,669,537 | + | yhjB | b3520 | 0.37 | +0.5 |
3,669,545 | - | yhjB | b3520 | 0.38 | -0.5 |
3,669,545 | - | yhjB | b3520 | 0.38 | -0.4 |
3,669,546 | - | yhjB | b3520 | 0.38 | -0.4 |
3,669,551 | + | yhjB | b3520 | 0.39 | +1.4 |
3,669,551 | + | yhjB | b3520 | 0.39 | +0.5 |
3,669,558 | - | yhjB | b3520 | 0.40 | -0.4 |
3,669,571 | + | yhjB | b3520 | 0.42 | +0.7 |
3,669,571 | + | yhjB | b3520 | 0.42 | +0.6 |
3,669,576 | - | yhjB | b3520 | 0.43 | +1.1 |
3,669,578 | + | yhjB | b3520 | 0.44 | +0.4 |
3,669,608 | - | yhjB | b3520 | 0.49 | -0.4 |
3,669,608 | - | yhjB | b3520 | 0.49 | +1.4 |
3,669,614 | + | yhjB | b3520 | 0.50 | -0.3 |
3,669,616 | + | yhjB | b3520 | 0.50 | +0.0 |
3,669,637 | - | yhjB | b3520 | 0.53 | +2.0 |
3,669,637 | - | yhjB | b3520 | 0.53 | -0.7 |
3,669,672 | - | yhjB | b3520 | 0.59 | -1.2 |
3,669,690 | - | yhjB | b3520 | 0.62 | -0.1 |
3,669,729 | + | yhjB | b3520 | 0.69 | +0.2 |
3,669,729 | + | yhjB | b3520 | 0.69 | +1.8 |
3,669,733 | + | yhjB | b3520 | 0.69 | +1.0 |
3,669,741 | - | yhjB | b3520 | 0.71 | -0.4 |
3,669,749 | + | yhjB | b3520 | 0.72 | -2.4 |
3,669,749 | + | yhjB | b3520 | 0.72 | +1.2 |
3,669,757 | + | yhjB | b3520 | 0.73 | -0.2 |
3,669,762 | + | yhjB | b3520 | 0.74 | -0.0 |
3,669,762 | + | yhjB | b3520 | 0.74 | -0.7 |
3,669,763 | + | yhjB | b3520 | 0.74 | +0.0 |
3,669,769 | + | yhjB | b3520 | 0.75 | -0.5 |
3,669,770 | - | yhjB | b3520 | 0.75 | -0.4 |
3,669,770 | - | yhjB | b3520 | 0.75 | +0.9 |
3,669,774 | + | yhjB | b3520 | 0.76 | +0.3 |
3,669,775 | - | yhjB | b3520 | 0.76 | +0.0 |
3,669,776 | - | yhjB | b3520 | 0.76 | -0.4 |
3,669,776 | - | yhjB | b3520 | 0.76 | +1.2 |
3,669,827 | + | yhjB | b3520 | 0.85 | +0.9 |
3,669,827 | + | yhjB | b3520 | 0.85 | +0.4 |
3,669,827 | + | yhjB | b3520 | 0.85 | +0.4 |
3,669,827 | + | yhjB | b3520 | 0.85 | +0.9 |
3,669,827 | + | yhjB | b3520 | 0.85 | +0.6 |
3,669,827 | + | yhjB | b3520 | 0.85 | -0.7 |
3,669,835 | + | yhjB | b3520 | 0.86 | -2.4 |
3,669,835 | - | yhjB | b3520 | 0.86 | +0.0 |
3,669,835 | - | yhjB | b3520 | 0.86 | +1.0 |
3,669,835 | - | yhjB | b3520 | 0.86 | -1.0 |
3,669,835 | - | yhjB | b3520 | 0.86 | +0.0 |
3,669,838 | - | yhjB | b3520 | 0.87 | +2.0 |
3,669,839 | + | yhjB | b3520 | 0.87 | -1.7 |
3,669,839 | + | yhjB | b3520 | 0.87 | +0.6 |
3,669,839 | + | yhjB | b3520 | 0.87 | +2.6 |
3,669,839 | + | yhjB | b3520 | 0.87 | +2.6 |
3,669,839 | + | yhjB | b3520 | 0.87 | -1.4 |
3,669,843 | - | yhjB | b3520 | 0.88 | -0.2 |
3,669,844 | + | yhjB | b3520 | 0.88 | -0.2 |
3,669,844 | + | yhjB | b3520 | 0.88 | +0.2 |
3,669,847 | - | yhjB | b3520 | 0.88 | -0.7 |
3,669,852 | - | yhjB | b3520 | 0.89 | -0.4 |
3,669,852 | - | yhjB | b3520 | 0.89 | +0.8 |
3,669,853 | - | yhjB | b3520 | 0.89 | +1.6 |
3,669,891 | - | +1.5 | |||
3,669,891 | - | +1.0 | |||
3,669,903 | - | +1.3 | |||
3,669,913 | - | -1.0 | |||
3,669,913 | - | -1.7 | |||
3,669,924 | + | +0.6 | |||
3,669,924 | + | +1.6 | |||
3,669,927 | - | +0.6 | |||
3,669,934 | + | +1.4 | |||
3,669,963 | - | +1.7 | |||
3,669,963 | - | -2.0 | |||
3,669,964 | + | +0.5 | |||
3,669,966 | + | +1.2 | |||
3,669,966 | + | +0.2 | |||
3,669,966 | - | +1.1 | |||
3,669,974 | - | +0.9 | |||
3,670,012 | + | +0.9 | |||
3,670,012 | + | -2.4 | |||
3,670,013 | + | -0.6 | |||
3,670,015 | + | -0.4 | |||
3,670,017 | + | -0.2 | |||
3,670,018 | - | +1.1 | |||
3,670,020 | - | +1.2 | |||
3,670,020 | - | +0.3 | |||
3,670,020 | - | +0.6 | |||
3,670,021 | - | -0.7 | |||
3,670,060 | + | -0.1 | |||
3,670,068 | - | +0.9 | |||
3,670,103 | - | +0.5 | |||
3,670,117 | + | -1.6 | |||
3,670,231 | - | -0.0 | |||
3,670,259 | - | +1.6 | |||
3,670,259 | - | -0.4 |
Or see this region's nucleotide sequence