Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yheL and yheM are separated by 7 nucleotides yheM and yheN overlap by 1 nucleotides yheN and yheO overlap by 1 nucleotides yheO and fkpA are separated by 166 nucleotides
b3343: yheL - predicted intracellular sulfur oxidation protein (NCBI), at 3,472,700 to 3,472,987
yheL
b3344: yheM - hypothetical protein (NCBI), at 3,472,995 to 3,473,354
yheM
b3345: yheN - hypothetical protein (NCBI), at 3,473,354 to 3,473,740
yheN
b3346: yheO - orf, hypothetical protein (VIMSS), at 3,473,740 to 3,474,462
yheO
b3347: fkpA - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI), at 3,474,629 to 3,475,441
fkpA
Position (kb)
3473
3474
3475 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3472.987 kb on - strand at 3472.987 kb on - strand at 3472.999 kb on - strand at 3473.352 kb on + strand at 3473.352 kb on + strand at 3473.745 kb on + strand at 3473.778 kb on + strand at 3473.784 kb on + strand at 3473.788 kb on + strand at 3473.788 kb on + strand at 3473.788 kb on + strand at 3473.790 kb on + strand at 3473.798 kb on - strand at 3473.800 kb on + strand at 3473.809 kb on - strand at 3473.810 kb on - strand at 3473.913 kb on - strand, within yheO at 3473.913 kb on - strand, within yheO at 3473.920 kb on - strand, within yheO at 3473.931 kb on - strand, within yheO at 3474.071 kb on - strand, within yheO at 3474.072 kb on - strand, within yheO at 3474.097 kb on - strand, within yheO at 3474.122 kb on + strand, within yheO at 3474.181 kb on + strand, within yheO at 3474.187 kb on - strand, within yheO at 3474.205 kb on - strand, within yheO at 3474.207 kb on + strand, within yheO at 3474.207 kb on - strand, within yheO at 3474.214 kb on - strand, within yheO at 3474.251 kb on + strand, within yheO at 3474.251 kb on + strand, within yheO at 3474.257 kb on - strand, within yheO at 3474.257 kb on - strand, within yheO at 3474.272 kb on - strand, within yheO at 3474.350 kb on - strand, within yheO at 3474.350 kb on - strand, within yheO at 3474.360 kb on - strand, within yheO at 3474.360 kb on - strand, within yheO at 3474.360 kb on - strand, within yheO at 3474.404 kb on - strand at 3474.485 kb on - strand at 3474.507 kb on - strand at 3474.520 kb on - strand at 3474.520 kb on - strand at 3474.536 kb on + strand at 3474.536 kb on + strand at 3474.578 kb on - strand at 3474.578 kb on - strand at 3474.664 kb on - strand at 3474.675 kb on + strand at 3474.689 kb on - strand at 3474.701 kb on - strand at 3474.702 kb on - strand at 3474.704 kb on + strand at 3474.722 kb on - strand, within fkpA at 3474.735 kb on - strand, within fkpA at 3474.810 kb on + strand, within fkpA at 3474.811 kb on + strand, within fkpA at 3474.818 kb on + strand, within fkpA at 3474.834 kb on + strand, within fkpA at 3474.840 kb on + strand, within fkpA at 3474.844 kb on + strand, within fkpA at 3474.852 kb on - strand, within fkpA at 3474.860 kb on - strand, within fkpA at 3474.874 kb on + strand, within fkpA at 3474.874 kb on + strand, within fkpA at 3474.893 kb on - strand, within fkpA at 3474.894 kb on - strand, within fkpA at 3474.919 kb on + strand, within fkpA at 3474.924 kb on + strand, within fkpA at 3474.935 kb on - strand, within fkpA at 3474.945 kb on - strand, within fkpA at 3474.945 kb on - strand, within fkpA at 3474.956 kb on + strand, within fkpA at 3474.968 kb on + strand, within fkpA at 3474.981 kb on + strand, within fkpA at 3474.982 kb on + strand, within fkpA at 3475.013 kb on - strand, within fkpA at 3475.049 kb on + strand, within fkpA at 3475.123 kb on + strand, within fkpA at 3475.132 kb on + strand, within fkpA at 3475.133 kb on - strand, within fkpA at 3475.133 kb on - strand, within fkpA at 3475.134 kb on + strand, within fkpA at 3475.134 kb on + strand, within fkpA at 3475.140 kb on - strand, within fkpA at 3475.266 kb on + strand, within fkpA at 3475.269 kb on + strand, within fkpA at 3475.271 kb on + strand, within fkpA at 3475.274 kb on - strand, within fkpA at 3475.274 kb on - strand, within fkpA at 3475.276 kb on + strand, within fkpA at 3475.283 kb on + strand, within fkpA at 3475.321 kb on + strand, within fkpA at 3475.334 kb on - strand at 3475.344 kb on + strand, within fkpA at 3475.344 kb on + strand, within fkpA at 3475.381 kb on + strand at 3475.381 kb on + strand at 3475.381 kb on + strand at 3475.385 kb on + strand at 3475.385 kb on + strand at 3475.385 kb on + strand at 3475.385 kb on + strand at 3475.425 kb on - strand at 3475.425 kb on - strand at 3475.438 kb on - strand at 3475.459 kb on + strand at 3475.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 3,472,987 - -1.4 3,472,987 - +1.6 3,472,999 - +0.2 3,473,352 + -1.7 3,473,352 + -0.1 3,473,745 + -1.0 3,473,778 + +1.0 3,473,784 + +0.6 3,473,788 + +0.0 3,473,788 + -2.6 3,473,788 + +0.0 3,473,790 + +1.6 3,473,798 - -0.5 3,473,800 + -0.4 3,473,809 - -0.7 3,473,810 - -1.3 3,473,913 - yheO b3346 0.24 +0.9 3,473,913 - yheO b3346 0.24 -0.4 3,473,920 - yheO b3346 0.25 -2.5 3,473,931 - yheO b3346 0.26 -1.7 3,474,071 - yheO b3346 0.46 +0.6 3,474,072 - yheO b3346 0.46 -2.2 3,474,097 - yheO b3346 0.49 +1.3 3,474,122 + yheO b3346 0.53 -2.0 3,474,181 + yheO b3346 0.61 +0.6 3,474,187 - yheO b3346 0.62 -2.1 3,474,205 - yheO b3346 0.64 -0.4 3,474,207 + yheO b3346 0.65 +0.9 3,474,207 - yheO b3346 0.65 -0.7 3,474,214 - yheO b3346 0.66 -0.2 3,474,251 + yheO b3346 0.71 -0.4 3,474,251 + yheO b3346 0.71 +1.3 3,474,257 - yheO b3346 0.72 -0.7 3,474,257 - yheO b3346 0.72 -0.8 3,474,272 - yheO b3346 0.74 -2.4 3,474,350 - yheO b3346 0.84 -1.2 3,474,350 - yheO b3346 0.84 -0.4 3,474,360 - yheO b3346 0.86 -0.4 3,474,360 - yheO b3346 0.86 +1.3 3,474,360 - yheO b3346 0.86 -1.7 3,474,404 - +0.6 3,474,485 - -1.0 3,474,507 - -1.0 3,474,520 - +1.2 3,474,520 - +0.6 3,474,536 + +1.6 3,474,536 + -0.4 3,474,578 - +0.3 3,474,578 - +0.6 3,474,664 - +0.0 3,474,675 + +1.0 3,474,689 - -0.9 3,474,701 - +1.1 3,474,702 - -0.4 3,474,704 + -0.4 3,474,722 - fkpA b3347 0.11 -0.7 3,474,735 - fkpA b3347 0.13 -1.6 3,474,810 + fkpA b3347 0.22 -0.4 3,474,811 + fkpA b3347 0.22 +0.6 3,474,818 + fkpA b3347 0.23 -0.2 3,474,834 + fkpA b3347 0.25 -0.8 3,474,840 + fkpA b3347 0.26 +0.1 3,474,844 + fkpA b3347 0.26 +0.1 3,474,852 - fkpA b3347 0.27 +0.3 3,474,860 - fkpA b3347 0.28 +0.0 3,474,874 + fkpA b3347 0.30 -1.1 3,474,874 + fkpA b3347 0.30 -0.7 3,474,893 - fkpA b3347 0.32 -0.4 3,474,894 - fkpA b3347 0.33 +0.6 3,474,919 + fkpA b3347 0.36 +1.8 3,474,924 + fkpA b3347 0.36 +0.4 3,474,935 - fkpA b3347 0.38 +0.4 3,474,945 - fkpA b3347 0.39 -1.0 3,474,945 - fkpA b3347 0.39 -2.2 3,474,956 + fkpA b3347 0.40 +0.8 3,474,968 + fkpA b3347 0.42 -1.4 3,474,981 + fkpA b3347 0.43 +0.0 3,474,982 + fkpA b3347 0.43 -1.7 3,475,013 - fkpA b3347 0.47 -0.7 3,475,049 + fkpA b3347 0.52 -0.8 3,475,123 + fkpA b3347 0.61 -2.1 3,475,132 + fkpA b3347 0.62 -0.7 3,475,133 - fkpA b3347 0.62 +0.8 3,475,133 - fkpA b3347 0.62 -1.4 3,475,134 + fkpA b3347 0.62 +0.8 3,475,134 + fkpA b3347 0.62 +0.6 3,475,140 - fkpA b3347 0.63 +1.6 3,475,266 + fkpA b3347 0.78 -2.0 3,475,269 + fkpA b3347 0.79 -1.0 3,475,271 + fkpA b3347 0.79 -0.5 3,475,274 - fkpA b3347 0.79 +1.3 3,475,274 - fkpA b3347 0.79 -0.4 3,475,276 + fkpA b3347 0.80 -2.7 3,475,283 + fkpA b3347 0.80 +0.1 3,475,321 + fkpA b3347 0.85 +0.2 3,475,334 - +0.6 3,475,344 + fkpA b3347 0.88 -1.0 3,475,344 + fkpA b3347 0.88 +0.2 3,475,381 + +1.6 3,475,381 + -1.8 3,475,381 + +0.0 3,475,385 + +0.6 3,475,385 + -1.0 3,475,385 + +0.4 3,475,385 + -0.4 3,475,425 - +0.2 3,475,425 - +0.6 3,475,438 - +0.2 3,475,459 + +0.3 3,475,459 + +0.0
Or see this region's nucleotide sequence