Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yrdE and accB are separated by 404 nucleotides accB and accC are separated by 10 nucleotides accC and yhdT are separated by 108 nucleotides yhdT and panF overlap by 11 nucleotides
b4646: yrdE - no description, at 3,402,660 to 3,403,053
yrdE
b3255: accB - acetyl-CoA carboxylase (NCBI), at 3,403,458 to 3,403,928
accB
b3256: accC - acetyl-CoA carboxylase (NCBI), at 3,403,939 to 3,405,288
accC
b3257: yhdT - conserved inner membrane protein (NCBI), at 3,405,397 to 3,405,639
yhdT
b3258: panF - sodium/pantothenate symporter (VIMSS), at 3,405,629 to 3,407,080
panF
Position (kb)
3403
3404
3405
3406 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3403.197 kb on - strand at 3403.370 kb on + strand at 3403.372 kb on + strand at 3403.372 kb on + strand at 3403.374 kb on + strand at 3405.412 kb on + strand at 3405.459 kb on - strand, within yhdT at 3405.576 kb on + strand, within yhdT at 3405.576 kb on + strand, within yhdT at 3405.584 kb on - strand, within yhdT at 3405.584 kb on - strand, within yhdT at 3405.619 kb on + strand at 3405.634 kb on + strand at 3405.634 kb on + strand at 3405.759 kb on - strand at 3405.799 kb on - strand, within panF at 3405.799 kb on - strand, within panF at 3405.799 kb on - strand, within panF at 3405.799 kb on - strand, within panF at 3405.990 kb on + strand, within panF at 3406.039 kb on + strand, within panF at 3406.083 kb on - strand, within panF at 3406.146 kb on - strand, within panF at 3406.172 kb on + strand, within panF at 3406.172 kb on - strand, within panF at 3406.177 kb on + strand, within panF at 3406.177 kb on + strand, within panF at 3406.185 kb on - strand, within panF at 3406.187 kb on + strand, within panF at 3406.228 kb on - strand, within panF at 3406.246 kb on - strand, within panF at 3406.253 kb on + strand, within panF at 3406.253 kb on + strand, within panF at 3406.268 kb on + strand, within panF at 3406.271 kb on - strand, within panF at 3406.276 kb on - strand, within panF
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 3,403,197 - -2.5 3,403,370 + -1.0 3,403,372 + +1.1 3,403,372 + -0.5 3,403,374 + +0.1 3,405,412 + -0.5 3,405,459 - yhdT b3257 0.26 -1.6 3,405,576 + yhdT b3257 0.74 +1.0 3,405,576 + yhdT b3257 0.74 -1.0 3,405,584 - yhdT b3257 0.77 -0.5 3,405,584 - yhdT b3257 0.77 -1.8 3,405,619 + -0.1 3,405,634 + -0.5 3,405,634 + +0.5 3,405,759 - -1.5 3,405,799 - panF b3258 0.12 -3.0 3,405,799 - panF b3258 0.12 -0.0 3,405,799 - panF b3258 0.12 -1.0 3,405,799 - panF b3258 0.12 -2.6 3,405,990 + panF b3258 0.25 +1.8 3,406,039 + panF b3258 0.28 -0.6 3,406,083 - panF b3258 0.31 +0.5 3,406,146 - panF b3258 0.36 -2.0 3,406,172 + panF b3258 0.37 -0.8 3,406,172 - panF b3258 0.37 -2.6 3,406,177 + panF b3258 0.38 -1.8 3,406,177 + panF b3258 0.38 +1.0 3,406,185 - panF b3258 0.38 -2.3 3,406,187 + panF b3258 0.38 +1.5 3,406,228 - panF b3258 0.41 -0.7 3,406,246 - panF b3258 0.42 +0.5 3,406,253 + panF b3258 0.43 -1.8 3,406,253 + panF b3258 0.43 -1.0 3,406,268 + panF b3258 0.44 -1.0 3,406,271 - panF b3258 0.44 -1.8 3,406,276 - panF b3258 0.45 -2.3
Or see this region's nucleotide sequence