Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yffS and eutA are separated by 148 nucleotides eutA and eutH overlap by 4 nucleotides
b2450: yffS - CPZ-55 prophage; predicted protein (RefSeq), at 2,562,545 to 2,563,354
yffS
b2451: eutA - reactivating factor for ethanolamine ammonia lyase (NCBI), at 2,563,503 to 2,564,906
eutA
b2452: eutH - predicted inner membrane protein (NCBI), at 2,564,903 to 2,566,129
eutH
Position (kb)
2563
2564
2565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2562.607 kb on - strand at 2562.611 kb on + strand at 2562.611 kb on + strand at 2562.693 kb on - strand, within yffS at 2562.777 kb on + strand, within yffS at 2562.777 kb on + strand, within yffS at 2563.370 kb on - strand at 2563.429 kb on - strand at 2563.754 kb on - strand, within eutA at 2563.754 kb on - strand, within eutA at 2563.862 kb on - strand, within eutA at 2563.862 kb on - strand, within eutA at 2563.913 kb on - strand, within eutA at 2563.949 kb on - strand, within eutA at 2564.001 kb on + strand, within eutA at 2564.037 kb on - strand, within eutA at 2564.285 kb on + strand, within eutA at 2564.377 kb on - strand, within eutA at 2564.443 kb on - strand, within eutA at 2564.443 kb on - strand, within eutA at 2564.498 kb on - strand, within eutA at 2564.498 kb on - strand, within eutA at 2564.577 kb on - strand, within eutA at 2564.599 kb on + strand, within eutA at 2564.626 kb on + strand, within eutA at 2564.636 kb on - strand, within eutA at 2564.636 kb on - strand, within eutA at 2564.741 kb on + strand, within eutA at 2564.743 kb on + strand, within eutA at 2564.753 kb on - strand, within eutA at 2564.865 kb on + strand at 2565.050 kb on + strand, within eutH at 2565.126 kb on + strand, within eutH at 2565.171 kb on - strand, within eutH at 2565.210 kb on - strand, within eutH at 2565.259 kb on - strand, within eutH at 2565.275 kb on + strand, within eutH at 2565.275 kb on + strand, within eutH at 2565.331 kb on + strand, within eutH at 2565.353 kb on - strand, within eutH at 2565.416 kb on + strand, within eutH at 2565.454 kb on - strand, within eutH at 2565.454 kb on - strand, within eutH at 2565.593 kb on + strand, within eutH at 2565.593 kb on + strand, within eutH at 2565.770 kb on - strand, within eutH at 2565.772 kb on - strand, within eutH at 2565.783 kb on - strand, within eutH at 2565.838 kb on - strand, within eutH at 2565.840 kb on + strand, within eutH
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 2,562,607 - +1.5 2,562,611 + -1.1 2,562,611 + -1.8 2,562,693 - yffS b2450 0.18 -2.6 2,562,777 + yffS b2450 0.29 -0.1 2,562,777 + yffS b2450 0.29 +0.2 2,563,370 - -0.1 2,563,429 - +0.4 2,563,754 - eutA b2451 0.18 +1.8 2,563,754 - eutA b2451 0.18 -1.4 2,563,862 - eutA b2451 0.26 +2.2 2,563,862 - eutA b2451 0.26 -0.8 2,563,913 - eutA b2451 0.29 +0.4 2,563,949 - eutA b2451 0.32 -0.3 2,564,001 + eutA b2451 0.35 -0.4 2,564,037 - eutA b2451 0.38 +0.6 2,564,285 + eutA b2451 0.56 -0.0 2,564,377 - eutA b2451 0.62 +0.7 2,564,443 - eutA b2451 0.67 -0.8 2,564,443 - eutA b2451 0.67 +2.3 2,564,498 - eutA b2451 0.71 -0.8 2,564,498 - eutA b2451 0.71 -0.8 2,564,577 - eutA b2451 0.76 +1.3 2,564,599 + eutA b2451 0.78 +0.2 2,564,626 + eutA b2451 0.80 -1.2 2,564,636 - eutA b2451 0.81 -1.0 2,564,636 - eutA b2451 0.81 -1.1 2,564,741 + eutA b2451 0.88 -1.4 2,564,743 + eutA b2451 0.88 +0.2 2,564,753 - eutA b2451 0.89 -1.4 2,564,865 + -1.1 2,565,050 + eutH b2452 0.12 -2.1 2,565,126 + eutH b2452 0.18 -1.4 2,565,171 - eutH b2452 0.22 -0.1 2,565,210 - eutH b2452 0.25 +0.5 2,565,259 - eutH b2452 0.29 -3.3 2,565,275 + eutH b2452 0.30 +0.2 2,565,275 + eutH b2452 0.30 -0.4 2,565,331 + eutH b2452 0.35 +1.6 2,565,353 - eutH b2452 0.37 -0.6 2,565,416 + eutH b2452 0.42 -0.1 2,565,454 - eutH b2452 0.45 -0.8 2,565,454 - eutH b2452 0.45 -0.2 2,565,593 + eutH b2452 0.56 +0.2 2,565,593 + eutH b2452 0.56 -0.5 2,565,770 - eutH b2452 0.71 +0.5 2,565,772 - eutH b2452 0.71 -1.4 2,565,783 - eutH b2452 0.72 +0.6 2,565,838 - eutH b2452 0.76 +1.5 2,565,840 + eutH b2452 0.76 -1.1
Or see this region's nucleotide sequence