Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and yfbF are separated by 3 nucleotides yfbF and yfbG overlap by 1 nucleotides
b2253: arnB - uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq), at 2,363,950 to 2,365,089
arnB
b2254: yfbF - undecaprenyl phosphate-L-Ara4FN transferase (NCBI), at 2,365,093 to 2,366,061
yfbF
b2255: yfbG - hypothetical protein (NCBI), at 2,366,061 to 2,368,043
yfbG
Position (kb)
2365
2366
2367 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2364.168 kb on - strand, within arnB at 2364.168 kb on - strand, within arnB at 2364.185 kb on - strand, within arnB at 2364.192 kb on + strand, within arnB at 2364.195 kb on - strand, within arnB at 2364.244 kb on - strand, within arnB at 2364.301 kb on + strand, within arnB at 2364.314 kb on + strand, within arnB at 2364.333 kb on + strand, within arnB at 2364.514 kb on - strand, within arnB at 2364.522 kb on + strand, within arnB at 2364.590 kb on - strand, within arnB at 2364.590 kb on - strand, within arnB at 2364.751 kb on - strand, within arnB at 2364.796 kb on - strand, within arnB at 2364.796 kb on - strand, within arnB at 2364.815 kb on - strand, within arnB at 2364.844 kb on + strand, within arnB at 2364.844 kb on + strand, within arnB at 2364.857 kb on - strand, within arnB at 2364.863 kb on + strand, within arnB at 2364.863 kb on + strand, within arnB at 2364.918 kb on - strand, within arnB at 2364.926 kb on + strand, within arnB at 2364.926 kb on + strand, within arnB at 2365.002 kb on + strand at 2365.021 kb on + strand at 2365.035 kb on - strand at 2365.053 kb on + strand at 2365.053 kb on + strand at 2365.056 kb on + strand at 2365.179 kb on - strand at 2365.181 kb on + strand at 2365.198 kb on - strand, within yfbF at 2365.200 kb on + strand, within yfbF at 2365.208 kb on - strand, within yfbF at 2365.220 kb on - strand, within yfbF at 2365.264 kb on - strand, within yfbF at 2365.290 kb on - strand, within yfbF at 2365.290 kb on - strand, within yfbF at 2365.414 kb on + strand, within yfbF at 2365.433 kb on + strand, within yfbF at 2365.450 kb on + strand, within yfbF at 2365.477 kb on - strand, within yfbF at 2365.529 kb on + strand, within yfbF at 2365.555 kb on + strand, within yfbF at 2365.555 kb on + strand, within yfbF at 2365.637 kb on + strand, within yfbF at 2365.773 kb on + strand, within yfbF at 2365.786 kb on - strand, within yfbF at 2365.786 kb on - strand, within yfbF at 2365.804 kb on - strand, within yfbF at 2365.854 kb on - strand, within yfbF at 2365.866 kb on + strand, within yfbF at 2365.866 kb on + strand, within yfbF at 2365.965 kb on - strand at 2365.983 kb on + strand at 2365.984 kb on + strand at 2365.984 kb on + strand at 2366.037 kb on - strand at 2366.098 kb on + strand at 2366.245 kb on - strand at 2366.255 kb on + strand at 2366.268 kb on - strand, within yfbG at 2366.274 kb on + strand, within yfbG at 2366.279 kb on + strand, within yfbG at 2366.280 kb on - strand, within yfbG at 2366.280 kb on - strand, within yfbG at 2366.364 kb on + strand, within yfbG at 2366.381 kb on - strand, within yfbG at 2366.541 kb on - strand, within yfbG at 2366.541 kb on - strand, within yfbG at 2366.553 kb on - strand, within yfbG at 2366.553 kb on - strand, within yfbG at 2366.578 kb on - strand, within yfbG at 2366.578 kb on - strand, within yfbG at 2366.580 kb on + strand, within yfbG at 2366.667 kb on - strand, within yfbG at 2366.714 kb on + strand, within yfbG at 2366.758 kb on + strand, within yfbG at 2366.820 kb on + strand, within yfbG at 2366.912 kb on - strand, within yfbG at 2366.924 kb on - strand, within yfbG at 2366.963 kb on - strand, within yfbG at 2366.970 kb on - strand, within yfbG at 2366.984 kb on + strand, within yfbG at 2366.992 kb on - strand, within yfbG
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 2,364,168 - arnB b2253 0.19 -2.1 2,364,168 - arnB b2253 0.19 +0.1 2,364,185 - arnB b2253 0.21 +0.4 2,364,192 + arnB b2253 0.21 +0.1 2,364,195 - arnB b2253 0.21 +1.1 2,364,244 - arnB b2253 0.26 +0.8 2,364,301 + arnB b2253 0.31 -0.9 2,364,314 + arnB b2253 0.32 -0.7 2,364,333 + arnB b2253 0.34 +0.7 2,364,514 - arnB b2253 0.49 -1.5 2,364,522 + arnB b2253 0.50 +0.4 2,364,590 - arnB b2253 0.56 +2.2 2,364,590 - arnB b2253 0.56 +1.3 2,364,751 - arnB b2253 0.70 -0.5 2,364,796 - arnB b2253 0.74 -0.3 2,364,796 - arnB b2253 0.74 -0.2 2,364,815 - arnB b2253 0.76 -1.4 2,364,844 + arnB b2253 0.78 +0.3 2,364,844 + arnB b2253 0.78 -0.9 2,364,857 - arnB b2253 0.80 +1.1 2,364,863 + arnB b2253 0.80 +1.1 2,364,863 + arnB b2253 0.80 +0.5 2,364,918 - arnB b2253 0.85 +0.3 2,364,926 + arnB b2253 0.86 +0.1 2,364,926 + arnB b2253 0.86 -1.9 2,365,002 + +0.6 2,365,021 + +1.5 2,365,035 - +0.2 2,365,053 + +1.5 2,365,053 + +0.3 2,365,056 + -1.2 2,365,179 - +0.3 2,365,181 + +0.8 2,365,198 - yfbF b2254 0.11 +0.8 2,365,200 + yfbF b2254 0.11 -1.2 2,365,208 - yfbF b2254 0.12 -1.2 2,365,220 - yfbF b2254 0.13 +0.5 2,365,264 - yfbF b2254 0.18 +1.5 2,365,290 - yfbF b2254 0.20 +1.4 2,365,290 - yfbF b2254 0.20 +1.8 2,365,414 + yfbF b2254 0.33 +0.5 2,365,433 + yfbF b2254 0.35 +1.1 2,365,450 + yfbF b2254 0.37 -0.5 2,365,477 - yfbF b2254 0.40 +2.2 2,365,529 + yfbF b2254 0.45 -1.5 2,365,555 + yfbF b2254 0.48 -0.9 2,365,555 + yfbF b2254 0.48 -1.3 2,365,637 + yfbF b2254 0.56 +0.9 2,365,773 + yfbF b2254 0.70 +0.9 2,365,786 - yfbF b2254 0.72 +0.1 2,365,786 - yfbF b2254 0.72 +1.1 2,365,804 - yfbF b2254 0.73 -0.9 2,365,854 - yfbF b2254 0.79 +0.4 2,365,866 + yfbF b2254 0.80 +1.1 2,365,866 + yfbF b2254 0.80 -0.7 2,365,965 - +0.6 2,365,983 + -0.2 2,365,984 + -0.3 2,365,984 + +1.2 2,366,037 - +0.9 2,366,098 + -2.4 2,366,245 - +0.7 2,366,255 + -0.9 2,366,268 - yfbG b2255 0.10 -0.9 2,366,274 + yfbG b2255 0.11 -0.2 2,366,279 + yfbG b2255 0.11 +0.3 2,366,280 - yfbG b2255 0.11 -1.9 2,366,280 - yfbG b2255 0.11 +0.6 2,366,364 + yfbG b2255 0.15 +1.1 2,366,381 - yfbG b2255 0.16 -1.3 2,366,541 - yfbG b2255 0.24 -0.2 2,366,541 - yfbG b2255 0.24 +3.1 2,366,553 - yfbG b2255 0.25 +0.5 2,366,553 - yfbG b2255 0.25 +1.9 2,366,578 - yfbG b2255 0.26 +1.1 2,366,578 - yfbG b2255 0.26 +0.5 2,366,580 + yfbG b2255 0.26 -0.7 2,366,667 - yfbG b2255 0.31 +0.1 2,366,714 + yfbG b2255 0.33 -0.3 2,366,758 + yfbG b2255 0.35 +0.7 2,366,820 + yfbG b2255 0.38 +0.6 2,366,912 - yfbG b2255 0.43 +1.2 2,366,924 - yfbG b2255 0.44 -0.9 2,366,963 - yfbG b2255 0.45 -0.3 2,366,970 - yfbG b2255 0.46 +0.1 2,366,984 + yfbG b2255 0.47 -0.5 2,366,992 - yfbG b2255 0.47 +1.7
Or see this region's nucleotide sequence