Strain Fitness in Escherichia coli BW25113 around b2155

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiG and cirA are separated by 31 nucleotidescirA and lysP are separated by 293 nucleotides b2154: yeiG - predicted esterase (NCBI), at 2,241,932 to 2,242,768 yeiG b2155: cirA - ferric iron-catecholate outer membrane transporter (NCBI), at 2,242,800 to 2,244,791 cirA b2156: lysP - lysine transporter (NCBI), at 2,245,085 to 2,246,554 lysP Position (kb) 2242 2243 2244 2245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2241.884 kb on - strandat 2241.884 kb on - strandat 2242.006 kb on - strandat 2242.045 kb on + strand, within yeiGat 2242.062 kb on - strand, within yeiGat 2242.062 kb on - strand, within yeiGat 2242.149 kb on + strand, within yeiGat 2242.453 kb on + strand, within yeiGat 2242.453 kb on + strand, within yeiGat 2242.456 kb on - strand, within yeiGat 2242.504 kb on + strand, within yeiGat 2242.626 kb on - strand, within yeiGat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.753 kb on + strandat 2242.761 kb on - strandat 2242.761 kb on - strandat 2242.890 kb on + strandat 2242.898 kb on - strandat 2242.921 kb on + strandat 2242.921 kb on + strandat 2242.942 kb on + strandat 2242.967 kb on + strandat 2243.005 kb on + strand, within cirAat 2243.005 kb on + strand, within cirAat 2243.143 kb on - strand, within cirAat 2243.202 kb on - strand, within cirAat 2243.202 kb on - strand, within cirAat 2243.243 kb on - strand, within cirAat 2243.295 kb on + strand, within cirAat 2243.417 kb on - strand, within cirAat 2243.417 kb on - strand, within cirAat 2243.561 kb on - strand, within cirAat 2243.603 kb on - strand, within cirAat 2243.616 kb on - strand, within cirAat 2243.616 kb on - strand, within cirAat 2243.931 kb on - strand, within cirAat 2243.931 kb on - strand, within cirAat 2243.967 kb on - strand, within cirAat 2244.152 kb on - strand, within cirAat 2244.152 kb on - strand, within cirAat 2244.389 kb on + strand, within cirAat 2244.389 kb on + strand, within cirAat 2244.394 kb on - strand, within cirAat 2244.394 kb on - strand, within cirAat 2244.436 kb on - strand, within cirAat 2244.557 kb on + strand, within cirAat 2244.582 kb on - strand, within cirAat 2244.629 kb on - strandat 2244.708 kb on + strandat 2244.784 kb on - strandat 2244.784 kb on - strandat 2244.800 kb on + strandat 2244.800 kb on + strandat 2244.856 kb on - strandat 2245.116 kb on + strandat 2245.178 kb on - strandat 2245.178 kb on - strandat 2245.196 kb on - strandat 2245.319 kb on + strand, within lysPat 2245.319 kb on + strand, within lysPat 2245.319 kb on + strand, within lysPat 2245.330 kb on + strand, within lysPat 2245.386 kb on - strand, within lysPat 2245.386 kb on - strand, within lysPat 2245.442 kb on - strand, within lysPat 2245.442 kb on - strand, within lysPat 2245.483 kb on + strand, within lysPat 2245.532 kb on - strand, within lysPat 2245.568 kb on - strand, within lysPat 2245.581 kb on + strand, within lysPat 2245.588 kb on - strand, within lysPat 2245.609 kb on - strand, within lysPat 2245.611 kb on - strand, within lysPat 2245.611 kb on - strand, within lysPat 2245.706 kb on - strand, within lysPat 2245.721 kb on + strand, within lysP

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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2,241,884 - -1.3
2,241,884 - +0.0
2,242,006 - -1.1
2,242,045 + yeiG b2154 0.14 -0.8
2,242,062 - yeiG b2154 0.16 +2.3
2,242,062 - yeiG b2154 0.16 -0.6
2,242,149 + yeiG b2154 0.26 +0.0
2,242,453 + yeiG b2154 0.62 -1.0
2,242,453 + yeiG b2154 0.62 +0.0
2,242,456 - yeiG b2154 0.63 +1.0
2,242,504 + yeiG b2154 0.68 +0.7
2,242,626 - yeiG b2154 0.83 +0.7
2,242,719 + +1.0
2,242,719 + +1.3
2,242,753 + +0.0
2,242,761 - +0.7
2,242,761 - -1.6
2,242,890 + -0.8
2,242,898 - -0.5
2,242,921 + +1.7
2,242,921 + -2.3
2,242,942 + +0.0
2,242,967 + +0.6
2,243,005 + cirA b2155 0.10 +0.3
2,243,005 + cirA b2155 0.10 +0.0
2,243,143 - cirA b2155 0.17 -2.0
2,243,202 - cirA b2155 0.20 +0.8
2,243,202 - cirA b2155 0.20 -1.6
2,243,243 - cirA b2155 0.22 -2.6
2,243,295 + cirA b2155 0.25 +0.3
2,243,417 - cirA b2155 0.31 +0.5
2,243,417 - cirA b2155 0.31 -2.3
2,243,561 - cirA b2155 0.38 +0.0
2,243,603 - cirA b2155 0.40 -1.6
2,243,616 - cirA b2155 0.41 +0.0
2,243,616 - cirA b2155 0.41 -1.6
2,243,931 - cirA b2155 0.57 -1.0
2,243,931 - cirA b2155 0.57 -1.4
2,243,967 - cirA b2155 0.59 -0.5
2,244,152 - cirA b2155 0.68 +0.6
2,244,152 - cirA b2155 0.68 +1.0
2,244,389 + cirA b2155 0.80 -1.0
2,244,389 + cirA b2155 0.80 +0.2
2,244,394 - cirA b2155 0.80 -0.6
2,244,394 - cirA b2155 0.80 -1.0
2,244,436 - cirA b2155 0.82 +0.4
2,244,557 + cirA b2155 0.88 -0.1
2,244,582 - cirA b2155 0.89 -2.0
2,244,629 - +1.0
2,244,708 + +1.2
2,244,784 - +0.2
2,244,784 - +0.8
2,244,800 + -1.0
2,244,800 + -1.0
2,244,856 - -0.2
2,245,116 + +1.4
2,245,178 - +1.2
2,245,178 - -1.0
2,245,196 - -3.3
2,245,319 + lysP b2156 0.16 +1.6
2,245,319 + lysP b2156 0.16 -1.6
2,245,319 + lysP b2156 0.16 +0.0
2,245,330 + lysP b2156 0.17 +0.8
2,245,386 - lysP b2156 0.20 +0.2
2,245,386 - lysP b2156 0.20 +0.5
2,245,442 - lysP b2156 0.24 -2.0
2,245,442 - lysP b2156 0.24 -0.6
2,245,483 + lysP b2156 0.27 -0.1
2,245,532 - lysP b2156 0.30 +0.4
2,245,568 - lysP b2156 0.33 -1.3
2,245,581 + lysP b2156 0.34 +0.8
2,245,588 - lysP b2156 0.34 +0.0
2,245,609 - lysP b2156 0.36 -0.1
2,245,611 - lysP b2156 0.36 -0.4
2,245,611 - lysP b2156 0.36 -1.6
2,245,706 - lysP b2156 0.42 +0.7
2,245,721 + lysP b2156 0.43 +0.4

Or see this region's nucleotide sequence