Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtB and mdtC are separated by 0 nucleotides mdtC and mdtD are separated by 0 nucleotides
b2075: mdtB - multidrug efflux system, subunit B (NCBI), at 2,153,287 to 2,156,409
mdtB
b2076: mdtC - multidrug efflux system, subunit C (NCBI), at 2,156,410 to 2,159,487
mdtC
b2077: mdtD - multidrug efflux system protein (NCBI), at 2,159,488 to 2,160,903
mdtD
Position (kb)
2156
2157
2158
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2155.480 kb on - strand, within mdtB at 2155.514 kb on - strand, within mdtB at 2155.543 kb on + strand, within mdtB at 2155.550 kb on - strand, within mdtB at 2155.566 kb on - strand, within mdtB at 2155.594 kb on - strand, within mdtB at 2155.630 kb on - strand, within mdtB at 2155.630 kb on - strand, within mdtB at 2155.761 kb on - strand, within mdtB at 2155.885 kb on + strand, within mdtB at 2155.919 kb on + strand, within mdtB at 2156.112 kb on - strand at 2156.167 kb on + strand at 2156.248 kb on - strand at 2156.265 kb on - strand at 2156.330 kb on - strand at 2156.357 kb on + strand at 2156.478 kb on + strand at 2156.511 kb on - strand at 2156.564 kb on + strand at 2156.564 kb on + strand at 2156.991 kb on + strand, within mdtC at 2157.092 kb on - strand, within mdtC at 2157.092 kb on - strand, within mdtC at 2157.158 kb on - strand, within mdtC at 2157.214 kb on - strand, within mdtC at 2157.272 kb on - strand, within mdtC at 2157.330 kb on + strand, within mdtC at 2157.378 kb on + strand, within mdtC at 2157.669 kb on + strand, within mdtC at 2157.669 kb on + strand, within mdtC at 2157.725 kb on - strand, within mdtC at 2157.733 kb on - strand, within mdtC at 2157.925 kb on - strand, within mdtC at 2158.008 kb on + strand, within mdtC at 2158.046 kb on - strand, within mdtC at 2158.079 kb on - strand, within mdtC at 2158.097 kb on + strand, within mdtC at 2158.193 kb on - strand, within mdtC at 2158.544 kb on + strand, within mdtC at 2158.544 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.651 kb on + strand, within mdtC at 2158.651 kb on + strand, within mdtC at 2158.859 kb on + strand, within mdtC at 2158.909 kb on - strand, within mdtC at 2159.001 kb on - strand, within mdtC at 2159.051 kb on + strand, within mdtC at 2159.051 kb on + strand, within mdtC at 2159.064 kb on - strand, within mdtC at 2159.313 kb on + strand at 2159.313 kb on + strand at 2159.346 kb on - strand at 2159.400 kb on + strand at 2159.401 kb on + strand at 2159.401 kb on + strand at 2159.403 kb on + strand at 2159.579 kb on - strand at 2159.579 kb on - strand at 2159.729 kb on + strand, within mdtD at 2159.729 kb on + strand, within mdtD at 2159.897 kb on - strand, within mdtD at 2159.898 kb on - strand, within mdtD at 2159.936 kb on + strand, within mdtD at 2159.962 kb on + strand, within mdtD at 2159.962 kb on + strand, within mdtD at 2160.017 kb on - strand, within mdtD at 2160.017 kb on - strand, within mdtD at 2160.033 kb on + strand, within mdtD at 2160.033 kb on + strand, within mdtD at 2160.063 kb on - strand, within mdtD at 2160.246 kb on - strand, within mdtD at 2160.288 kb on + strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.315 kb on - strand, within mdtD at 2160.315 kb on - strand, within mdtD at 2160.487 kb on + strand, within mdtD
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 2,155,480 - mdtB b2075 0.70 +1.0 2,155,514 - mdtB b2075 0.71 -0.7 2,155,543 + mdtB b2075 0.72 -1.6 2,155,550 - mdtB b2075 0.72 -1.0 2,155,566 - mdtB b2075 0.73 -1.0 2,155,594 - mdtB b2075 0.74 -0.6 2,155,630 - mdtB b2075 0.75 -0.1 2,155,630 - mdtB b2075 0.75 +1.2 2,155,761 - mdtB b2075 0.79 -1.3 2,155,885 + mdtB b2075 0.83 +0.8 2,155,919 + mdtB b2075 0.84 -1.6 2,156,112 - +0.2 2,156,167 + +0.3 2,156,248 - +1.0 2,156,265 - +0.7 2,156,330 - -0.3 2,156,357 + -3.2 2,156,478 + -1.1 2,156,511 - +0.6 2,156,564 + +0.6 2,156,564 + +0.7 2,156,991 + mdtC b2076 0.19 -0.2 2,157,092 - mdtC b2076 0.22 +0.0 2,157,092 - mdtC b2076 0.22 +2.0 2,157,158 - mdtC b2076 0.24 -1.0 2,157,214 - mdtC b2076 0.26 -0.6 2,157,272 - mdtC b2076 0.28 -0.4 2,157,330 + mdtC b2076 0.30 -2.6 2,157,378 + mdtC b2076 0.31 -1.0 2,157,669 + mdtC b2076 0.41 +0.6 2,157,669 + mdtC b2076 0.41 -0.3 2,157,725 - mdtC b2076 0.43 -2.3 2,157,733 - mdtC b2076 0.43 -0.5 2,157,925 - mdtC b2076 0.49 -0.3 2,158,008 + mdtC b2076 0.52 +0.0 2,158,046 - mdtC b2076 0.53 -1.0 2,158,079 - mdtC b2076 0.54 +0.6 2,158,097 + mdtC b2076 0.55 -1.0 2,158,193 - mdtC b2076 0.58 -1.0 2,158,544 + mdtC b2076 0.69 -0.6 2,158,544 + mdtC b2076 0.69 -0.3 2,158,644 + mdtC b2076 0.73 +1.9 2,158,644 + mdtC b2076 0.73 -0.4 2,158,644 + mdtC b2076 0.73 -1.0 2,158,651 + mdtC b2076 0.73 -0.6 2,158,651 + mdtC b2076 0.73 -2.6 2,158,859 + mdtC b2076 0.80 -1.6 2,158,909 - mdtC b2076 0.81 -0.3 2,159,001 - mdtC b2076 0.84 -1.3 2,159,051 + mdtC b2076 0.86 -2.2 2,159,051 + mdtC b2076 0.86 +2.8 2,159,064 - mdtC b2076 0.86 +0.3 2,159,313 + -1.0 2,159,313 + +0.0 2,159,346 - -0.4 2,159,400 + +2.0 2,159,401 + +1.3 2,159,401 + -0.4 2,159,403 + +1.1 2,159,579 - -0.3 2,159,579 - +0.7 2,159,729 + mdtD b2077 0.17 +1.2 2,159,729 + mdtD b2077 0.17 -1.0 2,159,897 - mdtD b2077 0.29 +0.0 2,159,898 - mdtD b2077 0.29 -1.0 2,159,936 + mdtD b2077 0.32 +0.9 2,159,962 + mdtD b2077 0.33 -1.0 2,159,962 + mdtD b2077 0.33 +0.0 2,160,017 - mdtD b2077 0.37 -0.8 2,160,017 - mdtD b2077 0.37 -0.7 2,160,033 + mdtD b2077 0.38 -1.0 2,160,033 + mdtD b2077 0.38 -2.8 2,160,063 - mdtD b2077 0.41 -0.3 2,160,246 - mdtD b2077 0.54 +0.6 2,160,288 + mdtD b2077 0.56 +0.4 2,160,292 - mdtD b2077 0.57 +0.4 2,160,292 - mdtD b2077 0.57 +0.3 2,160,292 - mdtD b2077 0.57 +0.2 2,160,315 - mdtD b2077 0.58 -1.0 2,160,315 - mdtD b2077 0.58 +1.6 2,160,487 + mdtD b2077 0.71 -2.3
Or see this region's nucleotide sequence