Strain Fitness in Escherichia coli BW25113 around b1597

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfM and asr are separated by 423 nucleotidesasr and ydgU are separated by 92 nucleotidesydgU and ydgD are separated by 99 nucleotides b1596: ynfM - predicted transporter (NCBI), at 1,667,723 to 1,668,976 ynfM b1597: asr - acid shock protein (VIMSS), at 1,669,400 to 1,669,708 asr b4601: ydgU - hypothetical protein (RefSeq), at 1,669,801 to 1,669,884 ydgU b1598: ydgD - predicted peptidase (NCBI), at 1,669,984 to 1,670,805 ydgD Position (kb) 1669 1670Strain fitness (log2 ratio) -2 -1 0 1 2at 1668.526 kb on - strand, within ynfMat 1668.526 kb on - strand, within ynfMat 1668.589 kb on - strand, within ynfMat 1668.589 kb on - strand, within ynfMat 1668.590 kb on - strand, within ynfMat 1668.601 kb on + strand, within ynfMat 1668.601 kb on + strand, within ynfMat 1668.620 kb on + strand, within ynfMat 1668.620 kb on + strand, within ynfMat 1668.628 kb on - strand, within ynfMat 1668.628 kb on - strand, within ynfMat 1668.665 kb on - strand, within ynfMat 1668.665 kb on - strand, within ynfMat 1668.683 kb on + strand, within ynfMat 1668.683 kb on + strand, within ynfMat 1668.737 kb on - strand, within ynfMat 1668.834 kb on + strand, within ynfMat 1668.958 kb on - strandat 1668.958 kb on - strandat 1669.099 kb on + strandat 1669.099 kb on + strandat 1669.145 kb on + strandat 1669.289 kb on + strandat 1669.289 kb on + strandat 1669.289 kb on + strandat 1669.289 kb on + strandat 1669.305 kb on - strandat 1669.305 kb on - strandat 1669.361 kb on + strandat 1669.363 kb on - strandat 1669.433 kb on + strand, within asrat 1669.433 kb on + strand, within asrat 1669.436 kb on - strand, within asrat 1669.441 kb on - strand, within asrat 1669.441 kb on - strand, within asrat 1669.447 kb on - strand, within asrat 1669.468 kb on - strand, within asrat 1669.802 kb on - strandat 1669.991 kb on - strandat 1669.997 kb on + strandat 1670.135 kb on + strand, within ydgDat 1670.161 kb on - strand, within ydgDat 1670.248 kb on + strand, within ydgDat 1670.337 kb on - strand, within ydgDat 1670.575 kb on + strand, within ydgDat 1670.673 kb on - strand, within ydgD

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,668,526 - ynfM b1596 0.64 -1.0
1,668,526 - ynfM b1596 0.64 -0.5
1,668,589 - ynfM b1596 0.69 -0.5
1,668,589 - ynfM b1596 0.69 -1.3
1,668,590 - ynfM b1596 0.69 +0.8
1,668,601 + ynfM b1596 0.70 -0.1
1,668,601 + ynfM b1596 0.70 -1.1
1,668,620 + ynfM b1596 0.72 -0.5
1,668,620 + ynfM b1596 0.72 -1.1
1,668,628 - ynfM b1596 0.72 +0.3
1,668,628 - ynfM b1596 0.72 +1.7
1,668,665 - ynfM b1596 0.75 +0.9
1,668,665 - ynfM b1596 0.75 -0.5
1,668,683 + ynfM b1596 0.77 -0.1
1,668,683 + ynfM b1596 0.77 -0.1
1,668,737 - ynfM b1596 0.81 -1.1
1,668,834 + ynfM b1596 0.89 +1.6
1,668,958 - +0.3
1,668,958 - -0.3
1,669,099 + -0.1
1,669,099 + -0.1
1,669,145 + -1.7
1,669,289 + -0.1
1,669,289 + -1.1
1,669,289 + +1.6
1,669,289 + -0.1
1,669,305 - -0.5
1,669,305 - +0.5
1,669,361 + +2.6
1,669,363 - +1.5
1,669,433 + asr b1597 0.11 +1.9
1,669,433 + asr b1597 0.11 -1.7
1,669,436 - asr b1597 0.12 +0.4
1,669,441 - asr b1597 0.13 -1.4
1,669,441 - asr b1597 0.13 -0.6
1,669,447 - asr b1597 0.15 -2.4
1,669,468 - asr b1597 0.22 -0.7
1,669,802 - +0.4
1,669,991 - +0.6
1,669,997 + -0.1
1,670,135 + ydgD b1598 0.18 +0.3
1,670,161 - ydgD b1598 0.22 -1.5
1,670,248 + ydgD b1598 0.32 -0.5
1,670,337 - ydgD b1598 0.43 +1.9
1,670,575 + ydgD b1598 0.72 +0.5
1,670,673 - ydgD b1598 0.84 -2.1

Or see this region's nucleotide sequence