Strain Fitness in Escherichia coli BW25113 around b1221

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychO and narL are separated by 0 nucleotidesnarL and narX overlap by 8 nucleotides b1220: ychO - predicted invasin (RefSeq), at 1,273,007 to 1,274,401 ychO b1221: narL - DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI), at 1,274,402 to 1,275,052 narL b1222: narX - sensory histidine kinase in two-component regulatory system with NarL (NCBI), at 1,275,045 to 1,276,841 narX Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -3 -2 -1 0 1at 1273.463 kb on + strand, within ychOat 1273.493 kb on + strand, within ychOat 1273.732 kb on + strand, within ychOat 1273.737 kb on + strand, within ychOat 1273.930 kb on - strand, within ychOat 1274.003 kb on + strand, within ychOat 1274.343 kb on - strandat 1274.391 kb on + strandat 1274.489 kb on - strand, within narLat 1274.543 kb on + strand, within narLat 1274.543 kb on + strand, within narLat 1274.583 kb on - strand, within narLat 1274.668 kb on - strand, within narLat 1274.677 kb on - strand, within narLat 1274.677 kb on - strand, within narLat 1275.022 kb on + strandat 1275.022 kb on + strandat 1275.035 kb on - strandat 1275.035 kb on - strandat 1275.476 kb on + strand, within narXat 1275.525 kb on + strand, within narXat 1275.525 kb on + strand, within narXat 1275.784 kb on - strand, within narXat 1275.905 kb on - strand, within narXat 1275.905 kb on - strand, within narX

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,273,463 + ychO b1220 0.33 -0.9
1,273,493 + ychO b1220 0.35 -2.9
1,273,732 + ychO b1220 0.52 -0.0
1,273,737 + ychO b1220 0.52 -0.3
1,273,930 - ychO b1220 0.66 -1.6
1,274,003 + ychO b1220 0.71 +1.0
1,274,343 - +0.2
1,274,391 + -1.0
1,274,489 - narL b1221 0.13 -1.0
1,274,543 + narL b1221 0.22 -0.0
1,274,543 + narL b1221 0.22 -0.0
1,274,583 - narL b1221 0.28 +1.4
1,274,668 - narL b1221 0.41 +1.1
1,274,677 - narL b1221 0.42 +0.3
1,274,677 - narL b1221 0.42 +1.5
1,275,022 + -0.0
1,275,022 + +1.5
1,275,035 - -1.0
1,275,035 - -0.0
1,275,476 + narX b1222 0.24 -0.0
1,275,525 + narX b1222 0.27 -1.6
1,275,525 + narX b1222 0.27 -1.0
1,275,784 - narX b1222 0.41 -0.0
1,275,905 - narX b1222 0.48 -1.0
1,275,905 - narX b1222 0.48 -0.0

Or see this region's nucleotide sequence