Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycaO and ycaP are separated by 129 nucleotides ycaP and serC are separated by 198 nucleotides
b0905: ycaO - orf, hypothetical protein (VIMSS), at 954,095 to 955,855
ycaO
b0906: ycaP - conserved inner membrane protein (NCBI), at 955,985 to 956,677
ycaP
b0907: serC - phosphoserine aminotransferase (NCBI), at 956,876 to 957,964
serC
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 955.067 kb on + strand, within ycaO at 955.067 kb on + strand, within ycaO at 955.070 kb on - strand, within ycaO at 955.070 kb on - strand, within ycaO at 955.070 kb on - strand, within ycaO at 955.080 kb on - strand, within ycaO at 955.092 kb on - strand, within ycaO at 955.284 kb on - strand, within ycaO at 955.579 kb on + strand, within ycaO at 955.611 kb on + strand, within ycaO at 955.611 kb on + strand, within ycaO at 955.611 kb on + strand, within ycaO at 955.619 kb on - strand, within ycaO at 955.688 kb on + strand at 955.724 kb on - strand at 955.755 kb on - strand at 955.755 kb on - strand at 955.771 kb on - strand at 955.870 kb on - strand at 955.952 kb on - strand at 955.952 kb on - strand at 956.020 kb on - strand at 956.051 kb on + strand at 956.051 kb on + strand at 956.063 kb on + strand, within ycaP at 956.070 kb on + strand, within ycaP at 956.078 kb on - strand, within ycaP at 956.123 kb on - strand, within ycaP at 956.151 kb on + strand, within ycaP at 956.151 kb on + strand, within ycaP at 956.185 kb on + strand, within ycaP at 956.250 kb on - strand, within ycaP at 956.253 kb on + strand, within ycaP at 956.253 kb on + strand, within ycaP at 956.260 kb on - strand, within ycaP at 956.260 kb on - strand, within ycaP at 956.390 kb on - strand, within ycaP at 956.391 kb on + strand, within ycaP at 956.391 kb on + strand, within ycaP at 956.453 kb on + strand, within ycaP at 956.523 kb on + strand, within ycaP at 956.523 kb on + strand, within ycaP at 956.532 kb on + strand, within ycaP at 956.532 kb on + strand, within ycaP at 956.772 kb on + strand at 956.774 kb on + strand at 956.774 kb on + strand at 956.917 kb on + strand at 956.951 kb on - strand at 956.967 kb on + strand at 956.967 kb on + strand at 957.064 kb on + strand, within serC at 957.257 kb on - strand, within serC at 957.265 kb on + strand, within serC at 957.265 kb on + strand, within serC at 957.405 kb on + strand, within serC at 957.504 kb on + strand, within serC at 957.526 kb on + strand, within serC at 957.579 kb on + strand, within serC at 957.594 kb on - strand, within serC
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 955,067 + ycaO b0905 0.55 +1.8 955,067 + ycaO b0905 0.55 +1.1 955,070 - ycaO b0905 0.55 -0.9 955,070 - ycaO b0905 0.55 +1.1 955,070 - ycaO b0905 0.55 -2.5 955,080 - ycaO b0905 0.56 -0.9 955,092 - ycaO b0905 0.57 -2.1 955,284 - ycaO b0905 0.68 -1.3 955,579 + ycaO b0905 0.84 -0.7 955,611 + ycaO b0905 0.86 +2.4 955,611 + ycaO b0905 0.86 -0.4 955,611 + ycaO b0905 0.86 -0.3 955,619 - ycaO b0905 0.87 -1.7 955,688 + +1.2 955,724 - +0.3 955,755 - -2.1 955,755 - -0.9 955,771 - +0.1 955,870 - -3.1 955,952 - -1.7 955,952 - -3.3 956,020 - -1.4 956,051 + -0.9 956,051 + -1.9 956,063 + ycaP b0906 0.11 +0.1 956,070 + ycaP b0906 0.12 +0.5 956,078 - ycaP b0906 0.13 +1.4 956,123 - ycaP b0906 0.20 -1.9 956,151 + ycaP b0906 0.24 -1.5 956,151 + ycaP b0906 0.24 +2.3 956,185 + ycaP b0906 0.29 -1.9 956,250 - ycaP b0906 0.38 -1.3 956,253 + ycaP b0906 0.39 -0.6 956,253 + ycaP b0906 0.39 +1.8 956,260 - ycaP b0906 0.40 +1.6 956,260 - ycaP b0906 0.40 +0.6 956,390 - ycaP b0906 0.58 +1.2 956,391 + ycaP b0906 0.59 +0.3 956,391 + ycaP b0906 0.59 +0.4 956,453 + ycaP b0906 0.68 +1.3 956,523 + ycaP b0906 0.78 +2.6 956,523 + ycaP b0906 0.78 -0.4 956,532 + ycaP b0906 0.79 +2.4 956,532 + ycaP b0906 0.79 +2.1 956,772 + -0.9 956,774 + +0.3 956,774 + -0.4 956,917 + +2.3 956,951 - +1.8 956,967 + +0.1 956,967 + +1.5 957,064 + serC b0907 0.17 +1.1 957,257 - serC b0907 0.35 +2.7 957,265 + serC b0907 0.36 -2.5 957,265 + serC b0907 0.36 +1.4 957,405 + serC b0907 0.49 -0.1 957,504 + serC b0907 0.58 -0.8 957,526 + serC b0907 0.60 +2.3 957,579 + serC b0907 0.65 +1.5 957,594 - serC b0907 0.66 +0.5
Or see this region's nucleotide sequence