Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fixB and fixC are separated by 50 nucleotides fixC and fixX overlap by 4 nucleotides fixX and yaaU are separated by 56 nucleotides
b0042: fixB - predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like (NCBI), at 43,188 to 44,129
fixB
b0043: fixC - predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI), at 44,180 to 45,466
fixC
b0044: fixX - predicted 4Fe-4S ferredoxin-type protein (NCBI), at 45,463 to 45,750
fixX
b0045: yaaU - predicted transporter (NCBI), at 45,807 to 47,138
yaaU
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.236 kb on - strand at 43.236 kb on - strand at 43.237 kb on + strand at 43.237 kb on + strand at 43.270 kb on - strand at 43.318 kb on - strand, within fixB at 43.432 kb on + strand, within fixB at 43.506 kb on + strand, within fixB at 43.531 kb on + strand, within fixB at 43.539 kb on - strand, within fixB at 43.574 kb on - strand, within fixB at 43.610 kb on + strand, within fixB at 43.630 kb on - strand, within fixB at 43.630 kb on - strand, within fixB at 43.682 kb on - strand, within fixB at 43.692 kb on + strand, within fixB at 43.740 kb on + strand, within fixB at 43.740 kb on + strand, within fixB at 43.835 kb on + strand, within fixB at 43.835 kb on + strand, within fixB at 43.835 kb on - strand, within fixB at 43.838 kb on + strand, within fixB at 43.867 kb on + strand, within fixB at 43.867 kb on + strand, within fixB at 43.871 kb on - strand, within fixB at 43.924 kb on + strand, within fixB at 43.952 kb on + strand, within fixB at 43.970 kb on - strand, within fixB at 44.076 kb on + strand at 44.158 kb on - strand at 44.176 kb on + strand at 44.214 kb on + strand at 44.214 kb on + strand at 44.214 kb on + strand at 44.222 kb on - strand at 44.243 kb on - strand at 44.326 kb on + strand, within fixC at 44.335 kb on - strand, within fixC at 44.335 kb on - strand, within fixC at 44.398 kb on - strand, within fixC at 44.581 kb on - strand, within fixC at 44.622 kb on - strand, within fixC at 44.622 kb on - strand, within fixC at 44.649 kb on + strand, within fixC at 44.675 kb on - strand, within fixC at 44.676 kb on - strand, within fixC at 44.765 kb on + strand, within fixC at 44.857 kb on - strand, within fixC at 44.862 kb on - strand, within fixC at 44.906 kb on - strand, within fixC at 45.034 kb on + strand, within fixC at 45.034 kb on + strand, within fixC at 45.044 kb on + strand, within fixC at 45.044 kb on + strand, within fixC at 45.232 kb on + strand, within fixC at 45.241 kb on - strand, within fixC at 45.323 kb on - strand, within fixC at 45.339 kb on + strand at 45.339 kb on + strand at 45.340 kb on - strand at 45.426 kb on + strand at 45.546 kb on - strand, within fixX at 45.610 kb on + strand, within fixX at 45.700 kb on - strand, within fixX at 45.704 kb on + strand, within fixX at 45.704 kb on + strand, within fixX at 45.844 kb on + strand at 45.880 kb on - strand at 45.924 kb on + strand at 46.113 kb on + strand, within yaaU at 46.113 kb on + strand, within yaaU at 46.142 kb on - strand, within yaaU at 46.144 kb on - strand, within yaaU at 46.176 kb on - strand, within yaaU at 46.176 kb on - strand, within yaaU at 46.240 kb on + strand, within yaaU at 46.284 kb on - strand, within yaaU at 46.329 kb on + strand, within yaaU at 46.329 kb on + strand, within yaaU at 46.463 kb on + strand, within yaaU at 46.463 kb on + strand, within yaaU
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 43,236 - +0.0 43,236 - -0.6 43,237 + -0.6 43,237 + +0.7 43,270 - +0.4 43,318 - fixB b0042 0.14 -0.0 43,432 + fixB b0042 0.26 +0.2 43,506 + fixB b0042 0.34 +1.7 43,531 + fixB b0042 0.36 -0.3 43,539 - fixB b0042 0.37 -0.3 43,574 - fixB b0042 0.41 -0.6 43,610 + fixB b0042 0.45 +1.0 43,630 - fixB b0042 0.47 -1.2 43,630 - fixB b0042 0.47 +1.1 43,682 - fixB b0042 0.52 +1.3 43,692 + fixB b0042 0.54 -0.7 43,740 + fixB b0042 0.59 -1.6 43,740 + fixB b0042 0.59 +0.4 43,835 + fixB b0042 0.69 -0.9 43,835 + fixB b0042 0.69 +0.4 43,835 - fixB b0042 0.69 -1.0 43,838 + fixB b0042 0.69 +1.4 43,867 + fixB b0042 0.72 +0.4 43,867 + fixB b0042 0.72 -1.0 43,871 - fixB b0042 0.73 -0.5 43,924 + fixB b0042 0.78 +0.7 43,952 + fixB b0042 0.81 -0.4 43,970 - fixB b0042 0.83 +0.4 44,076 + -1.8 44,158 - +0.4 44,176 + -0.6 44,214 + -2.2 44,214 + -0.6 44,214 + +0.8 44,222 - +0.0 44,243 - +0.7 44,326 + fixC b0043 0.11 +0.2 44,335 - fixC b0043 0.12 -1.4 44,335 - fixC b0043 0.12 -1.2 44,398 - fixC b0043 0.17 -0.6 44,581 - fixC b0043 0.31 -0.3 44,622 - fixC b0043 0.34 -0.6 44,622 - fixC b0043 0.34 -1.6 44,649 + fixC b0043 0.36 +0.4 44,675 - fixC b0043 0.38 -0.4 44,676 - fixC b0043 0.39 +1.4 44,765 + fixC b0043 0.45 -1.6 44,857 - fixC b0043 0.53 -0.8 44,862 - fixC b0043 0.53 +0.9 44,906 - fixC b0043 0.56 -1.8 45,034 + fixC b0043 0.66 -1.2 45,034 + fixC b0043 0.66 +0.4 45,044 + fixC b0043 0.67 +0.4 45,044 + fixC b0043 0.67 -1.4 45,232 + fixC b0043 0.82 +1.2 45,241 - fixC b0043 0.82 +0.4 45,323 - fixC b0043 0.89 -1.2 45,339 + +1.4 45,339 + +0.4 45,340 - -0.3 45,426 + +1.9 45,546 - fixX b0044 0.29 +0.2 45,610 + fixX b0044 0.51 -2.4 45,700 - fixX b0044 0.82 -0.1 45,704 + fixX b0044 0.84 -0.0 45,704 + fixX b0044 0.84 +0.4 45,844 + +0.4 45,880 - +1.6 45,924 + +1.0 46,113 + yaaU b0045 0.23 -0.6 46,113 + yaaU b0045 0.23 +1.1 46,142 - yaaU b0045 0.25 +0.4 46,144 - yaaU b0045 0.25 -2.4 46,176 - yaaU b0045 0.28 +2.4 46,176 - yaaU b0045 0.28 -0.6 46,240 + yaaU b0045 0.33 -1.8 46,284 - yaaU b0045 0.36 +0.9 46,329 + yaaU b0045 0.39 +0.4 46,329 + yaaU b0045 0.39 -0.0 46,463 + yaaU b0045 0.49 +0.4 46,463 + yaaU b0045 0.49 -0.6
Or see this region's nucleotide sequence