Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0480

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0479 and Echvi_0480 are separated by 76 nucleotidesEchvi_0480 and Echvi_0481 are separated by 183 nucleotides Echvi_0479: Echvi_0479 - Predicted dehydrogenases and related proteins, at 527,175 to 528,251 _0479 Echvi_0480: Echvi_0480 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 528,328 to 529,257 _0480 Echvi_0481: Echvi_0481 - NAD-dependent aldehyde dehydrogenases, at 529,441 to 530,970 _0481 Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2 3at 527.348 kb on + strand, within Echvi_0479at 527.348 kb on + strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.349 kb on - strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.393 kb on + strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.394 kb on - strand, within Echvi_0479at 527.419 kb on - strand, within Echvi_0479at 527.477 kb on + strand, within Echvi_0479at 527.478 kb on - strand, within Echvi_0479at 527.482 kb on + strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.545 kb on - strand, within Echvi_0479at 527.547 kb on - strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.715 kb on + strand, within Echvi_0479at 527.716 kb on - strand, within Echvi_0479at 527.793 kb on - strand, within Echvi_0479at 527.808 kb on + strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.809 kb on - strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.810 kb on + strand, within Echvi_0479at 527.815 kb on - strand, within Echvi_0479at 527.880 kb on - strand, within Echvi_0479at 528.051 kb on - strand, within Echvi_0479at 528.321 kb on + strandat 528.322 kb on - strandat 528.358 kb on + strandat 528.511 kb on - strand, within Echvi_0480at 528.598 kb on + strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.599 kb on - strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.604 kb on + strand, within Echvi_0480at 528.632 kb on + strand, within Echvi_0480at 528.637 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.822 kb on + strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.888 kb on - strand, within Echvi_0480at 528.988 kb on - strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.989 kb on + strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 528.990 kb on - strand, within Echvi_0480at 529.134 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.138 kb on - strand, within Echvi_0480at 529.226 kb on + strandat 529.227 kb on - strandat 529.239 kb on + strandat 529.240 kb on - strandat 529.240 kb on - strandat 529.262 kb on - strandat 529.274 kb on - strandat 529.286 kb on + strandat 529.287 kb on - strandat 529.287 kb on - strandat 529.338 kb on + strandat 529.354 kb on + strandat 529.399 kb on - strandat 529.399 kb on - strandat 529.438 kb on - strandat 529.438 kb on - strandat 529.446 kb on + strandat 529.447 kb on - strandat 529.447 kb on - strandat 529.451 kb on + strandat 529.505 kb on - strandat 529.505 kb on - strandat 529.696 kb on - strand, within Echvi_0481at 529.720 kb on - strand, within Echvi_0481at 529.739 kb on - strand, within Echvi_0481at 529.739 kb on - strand, within Echvi_0481at 529.742 kb on + strand, within Echvi_0481at 529.743 kb on - strand, within Echvi_0481at 529.751 kb on + strand, within Echvi_0481at 529.751 kb on + strand, within Echvi_0481at 529.764 kb on + strand, within Echvi_0481at 529.778 kb on + strand, within Echvi_0481at 529.885 kb on - strand, within Echvi_0481at 529.885 kb on - strand, within Echvi_0481at 530.001 kb on + strand, within Echvi_0481at 530.001 kb on + strand, within Echvi_0481at 530.201 kb on - strand, within Echvi_0481

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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527,348 + Echvi_0479 0.16 -1.0
527,348 + Echvi_0479 0.16 +0.3
527,349 - Echvi_0479 0.16 +0.9
527,349 - Echvi_0479 0.16 +0.3
527,393 + Echvi_0479 0.20 -0.4
527,393 + Echvi_0479 0.20 -0.1
527,394 - Echvi_0479 0.20 -1.1
527,394 - Echvi_0479 0.20 -0.2
527,419 - Echvi_0479 0.23 -1.4
527,477 + Echvi_0479 0.28 +0.0
527,478 - Echvi_0479 0.28 -0.2
527,482 + Echvi_0479 0.29 +0.5
527,545 - Echvi_0479 0.34 -0.3
527,545 - Echvi_0479 0.34 -0.4
527,545 - Echvi_0479 0.34 -2.4
527,547 - Echvi_0479 0.35 -1.1
527,715 + Echvi_0479 0.50 +0.1
527,715 + Echvi_0479 0.50 +0.8
527,715 + Echvi_0479 0.50 +0.9
527,716 - Echvi_0479 0.50 -0.3
527,793 - Echvi_0479 0.57 -0.2
527,808 + Echvi_0479 0.59 -1.6
527,809 - Echvi_0479 0.59 +0.9
527,809 - Echvi_0479 0.59 +0.0
527,810 + Echvi_0479 0.59 -0.1
527,810 + Echvi_0479 0.59 -0.0
527,815 - Echvi_0479 0.59 -0.2
527,880 - Echvi_0479 0.65 -0.5
528,051 - Echvi_0479 0.81 -0.3
528,321 + +0.4
528,322 - -0.9
528,358 + -0.7
528,511 - Echvi_0480 0.20 +1.1
528,598 + Echvi_0480 0.29 -1.4
528,599 - Echvi_0480 0.29 -0.7
528,599 - Echvi_0480 0.29 +0.6
528,604 + Echvi_0480 0.30 -0.6
528,604 + Echvi_0480 0.30 -0.2
528,632 + Echvi_0480 0.33 -0.6
528,637 + Echvi_0480 0.33 -0.2
528,822 + Echvi_0480 0.53 -0.7
528,822 + Echvi_0480 0.53 -1.2
528,888 - Echvi_0480 0.60 -1.6
528,888 - Echvi_0480 0.60 -2.0
528,988 - Echvi_0480 0.71 -0.5
528,989 + Echvi_0480 0.71 -0.4
528,989 + Echvi_0480 0.71 +0.5
528,990 - Echvi_0480 0.71 -0.7
528,990 - Echvi_0480 0.71 -0.9
528,990 - Echvi_0480 0.71 -0.3
529,134 - Echvi_0480 0.87 -0.2
529,138 - Echvi_0480 0.87 -0.9
529,138 - Echvi_0480 0.87 +0.3
529,226 + -2.2
529,227 - +0.1
529,239 + +0.4
529,240 - -0.7
529,240 - +0.7
529,262 - +0.3
529,274 - +0.9
529,286 + -2.2
529,287 - -0.8
529,287 - -1.1
529,338 + +0.6
529,354 + -0.9
529,399 - +2.9
529,399 - -0.2
529,438 - -0.0
529,438 - +1.1
529,446 + -0.8
529,447 - -0.3
529,447 - +1.9
529,451 + -0.4
529,505 - -0.4
529,505 - -0.9
529,696 - Echvi_0481 0.17 -1.4
529,720 - Echvi_0481 0.18 -0.1
529,739 - Echvi_0481 0.19 +0.3
529,739 - Echvi_0481 0.19 +0.3
529,742 + Echvi_0481 0.20 +2.1
529,743 - Echvi_0481 0.20 -1.7
529,751 + Echvi_0481 0.20 -0.4
529,751 + Echvi_0481 0.20 -1.1
529,764 + Echvi_0481 0.21 -0.2
529,778 + Echvi_0481 0.22 +0.5
529,885 - Echvi_0481 0.29 -1.1
529,885 - Echvi_0481 0.29 -1.0
530,001 + Echvi_0481 0.37 -0.1
530,001 + Echvi_0481 0.37 +1.9
530,201 - Echvi_0481 0.50 +0.8

Or see this region's nucleotide sequence