Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0376

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0374 and Echvi_0375 are separated by 209 nucleotidesEchvi_0375 and Echvi_0376 are separated by 300 nucleotidesEchvi_0376 and Echvi_0377 are separated by 63 nucleotidesEchvi_0377 and Echvi_0378 are separated by 67 nucleotidesEchvi_0378 and Echvi_0379 are separated by 166 nucleotides Echvi_0374: Echvi_0374 - Predicted membrane protein, at 401,760 to 402,704 _0374 Echvi_0375: Echvi_0375 - tRNA, at 402,914 to 402,998 _0375 Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862 _0376 Echvi_0377: Echvi_0377 - hypothetical protein, at 403,926 to 404,474 _0377 Echvi_0378: Echvi_0378 - hypothetical protein, at 404,542 to 404,688 _0378 Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Position (kb) 403 404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 402.336 kb on + strand, within Echvi_0374at 402.336 kb on + strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.363 kb on - strand, within Echvi_0374at 402.369 kb on + strand, within Echvi_0374at 402.401 kb on - strand, within Echvi_0374at 402.435 kb on - strand, within Echvi_0374at 402.435 kb on - strand, within Echvi_0374at 402.526 kb on - strand, within Echvi_0374at 402.526 kb on - strand, within Echvi_0374at 402.587 kb on + strand, within Echvi_0374at 402.587 kb on + strand, within Echvi_0374at 402.658 kb on + strandat 402.658 kb on + strandat 402.658 kb on + strandat 402.847 kb on + strandat 403.129 kb on - strandat 403.131 kb on + strandat 403.132 kb on - strandat 403.148 kb on - strandat 403.184 kb on + strandat 403.243 kb on + strandat 403.243 kb on + strandat 403.276 kb on + strandat 403.277 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.379 kb on + strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.403 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.409 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.413 kb on - strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.449 kb on - strand, within Echvi_0376at 403.491 kb on + strand, within Echvi_0376at 403.492 kb on - strand, within Echvi_0376at 403.521 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.534 kb on - strand, within Echvi_0376at 403.553 kb on - strand, within Echvi_0376at 403.591 kb on + strand, within Echvi_0376at 403.653 kb on + strand, within Echvi_0376at 403.666 kb on + strand, within Echvi_0376at 403.671 kb on - strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.675 kb on - strandat 403.676 kb on + strand, within Echvi_0376at 403.676 kb on + strand, within Echvi_0376at 403.679 kb on + strand, within Echvi_0376at 403.757 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.787 kb on - strand, within Echvi_0376at 403.823 kb on + strandat 403.824 kb on - strandat 403.862 kb on + strandat 403.862 kb on + strandat 403.882 kb on + strandat 403.883 kb on - strandat 403.883 kb on - strandat 403.944 kb on - strandat 404.000 kb on + strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.005 kb on - strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.079 kb on + strand, within Echvi_0377at 404.080 kb on - strand, within Echvi_0377at 404.105 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.189 kb on + strand, within Echvi_0377at 404.190 kb on - strand, within Echvi_0377at 404.209 kb on + strand, within Echvi_0377at 404.210 kb on - strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.426 kb on - strandat 404.429 kb on + strandat 404.433 kb on + strandat 404.433 kb on + strandat 404.487 kb on + strandat 404.493 kb on + strandat 404.493 kb on + strandat 404.523 kb on + strandat 404.618 kb on + strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.621 kb on + strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.674 kb on - strandat 404.674 kb on - strandat 404.676 kb on - strandat 404.676 kb on - strandat 404.679 kb on - strandat 404.687 kb on - strandat 404.704 kb on + strandat 404.750 kb on - strandat 404.803 kb on - strandat 404.803 kb on - strandat 404.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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402,336 + Echvi_0374 0.61 +0.1
402,336 + Echvi_0374 0.61 -0.0
402,361 - Echvi_0374 0.64 -0.7
402,361 - Echvi_0374 0.64 -1.5
402,361 - Echvi_0374 0.64 -0.8
402,361 - Echvi_0374 0.64 -1.5
402,363 - Echvi_0374 0.64 +0.7
402,369 + Echvi_0374 0.64 -0.2
402,401 - Echvi_0374 0.68 +0.5
402,435 - Echvi_0374 0.71 +0.5
402,435 - Echvi_0374 0.71 +1.2
402,526 - Echvi_0374 0.81 -0.8
402,526 - Echvi_0374 0.81 +0.6
402,587 + Echvi_0374 0.88 -0.6
402,587 + Echvi_0374 0.88 +0.7
402,658 + -0.2
402,658 + -0.6
402,658 + -1.8
402,847 + -0.8
403,129 - -0.8
403,131 + +0.6
403,132 - +0.9
403,148 - +0.0
403,184 + -0.5
403,243 + +0.9
403,243 + +0.3
403,276 + +0.5
403,277 - -0.8
403,350 - -0.7
403,350 - -0.0
403,350 - -0.5
403,379 + Echvi_0376 0.14 -1.1
403,380 - Echvi_0376 0.14 -0.5
403,380 - Echvi_0376 0.14 +1.1
403,391 - Echvi_0376 0.16 +0.0
403,391 - Echvi_0376 0.16 -0.4
403,403 + Echvi_0376 0.18 +1.0
403,405 + Echvi_0376 0.19 -0.7
403,405 + Echvi_0376 0.19 -0.7
403,405 + Echvi_0376 0.19 +0.7
403,406 - Echvi_0376 0.19 +0.4
403,406 - Echvi_0376 0.19 -0.2
403,406 - Echvi_0376 0.19 -0.5
403,409 + Echvi_0376 0.20 -0.5
403,412 + Echvi_0376 0.20 +1.4
403,412 + Echvi_0376 0.20 +1.3
403,413 - Echvi_0376 0.20 -0.6
403,448 + Echvi_0376 0.26 +0.3
403,448 + Echvi_0376 0.26 -0.4
403,449 - Echvi_0376 0.27 -1.1
403,491 + Echvi_0376 0.34 -0.0
403,492 - Echvi_0376 0.34 -0.5
403,521 - Echvi_0376 0.39 -0.1
403,526 - Echvi_0376 0.40 -0.6
403,526 - Echvi_0376 0.40 +0.3
403,526 - Echvi_0376 0.40 -0.6
403,526 - Echvi_0376 0.40 +0.3
403,534 - Echvi_0376 0.42 -3.0
403,553 - Echvi_0376 0.45 -0.1
403,591 + Echvi_0376 0.52 -0.9
403,653 + Echvi_0376 0.63 -0.3
403,666 + Echvi_0376 0.65 +0.5
403,671 - Echvi_0376 0.66 +0.5
403,674 + Echvi_0376 0.66 +1.0
403,674 + Echvi_0376 0.66 +0.1
403,674 + Echvi_0376 0.66 -1.9
403,674 + Echvi_0376 0.66 -1.1
403,674 + Echvi_0376 0.66 -0.2
403,675 - -0.1
403,676 + Echvi_0376 0.67 -0.9
403,676 + Echvi_0376 0.67 +0.5
403,679 + Echvi_0376 0.67 -0.1
403,757 + Echvi_0376 0.81 -1.1
403,786 + Echvi_0376 0.86 -0.7
403,786 + Echvi_0376 0.86 -0.3
403,787 - Echvi_0376 0.87 -0.6
403,823 + -1.7
403,824 - -1.3
403,862 + -0.1
403,862 + -0.1
403,882 + -1.9
403,883 - -0.1
403,883 - -1.5
403,944 - +0.8
404,000 + Echvi_0377 0.13 +1.9
404,001 - Echvi_0377 0.14 -1.7
404,001 - Echvi_0377 0.14 -0.3
404,004 + Echvi_0377 0.14 -0.2
404,004 + Echvi_0377 0.14 -0.1
404,004 + Echvi_0377 0.14 -1.2
404,005 - Echvi_0377 0.14 +0.5
404,069 + Echvi_0377 0.26 +0.1
404,069 + Echvi_0377 0.26 -0.2
404,079 + Echvi_0377 0.28 +0.7
404,080 - Echvi_0377 0.28 -0.1
404,105 + Echvi_0377 0.33 +0.2
404,127 + Echvi_0377 0.37 -0.4
404,127 + Echvi_0377 0.37 +0.5
404,189 + Echvi_0377 0.48 +1.5
404,190 - Echvi_0377 0.48 -0.7
404,209 + Echvi_0377 0.52 -2.4
404,210 - Echvi_0377 0.52 -0.7
404,348 + Echvi_0377 0.77 -0.2
404,348 + Echvi_0377 0.77 +0.6
404,360 + Echvi_0377 0.79 -0.9
404,360 + Echvi_0377 0.79 -0.2
404,381 + Echvi_0377 0.83 -0.4
404,381 + Echvi_0377 0.83 -0.5
404,381 + Echvi_0377 0.83 +0.6
404,426 - -1.1
404,429 + -0.5
404,433 + -0.7
404,433 + -0.2
404,487 + -0.7
404,493 + -0.5
404,493 + +1.5
404,523 + -0.1
404,618 + Echvi_0378 0.52 -0.9
404,619 - Echvi_0378 0.52 -1.7
404,619 - Echvi_0378 0.52 -0.1
404,621 + Echvi_0378 0.54 -0.9
404,622 - Echvi_0378 0.54 +0.6
404,622 - Echvi_0378 0.54 -1.1
404,674 - -0.7
404,674 - -0.5
404,676 - +2.9
404,676 - -3.0
404,679 - -1.2
404,687 - -0.1
404,704 + +0.2
404,750 - -0.3
404,803 - -0.2
404,803 - +0.9
404,807 - -0.5

Or see this region's nucleotide sequence