Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0367

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0366 and Echvi_0367 are separated by 59 nucleotidesEchvi_0367 and Echvi_0368 are separated by 61 nucleotidesEchvi_0368 and Echvi_0369 are separated by 79 nucleotides Echvi_0366: Echvi_0366 - Uncharacterized protein conserved in bacteria containing a pentein-type domain, at 394,051 to 394,995 _0366 Echvi_0367: Echvi_0367 - hypothetical protein, at 395,055 to 395,969 _0367 Echvi_0368: Echvi_0368 - hypothetical protein, at 396,031 to 396,132 _0368 Echvi_0369: Echvi_0369 - ATPases with chaperone activity, ATP-binding subunit, at 396,212 to 398,740 _0369 Position (kb) 395 396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 394.104 kb on + strandat 394.135 kb on - strandat 394.161 kb on + strand, within Echvi_0366at 394.162 kb on - strand, within Echvi_0366at 394.163 kb on + strand, within Echvi_0366at 394.195 kb on - strand, within Echvi_0366at 394.206 kb on - strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.263 kb on + strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.264 kb on - strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.440 kb on + strand, within Echvi_0366at 394.542 kb on - strand, within Echvi_0366at 394.618 kb on - strand, within Echvi_0366at 394.642 kb on - strand, within Echvi_0366at 394.660 kb on + strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.661 kb on - strand, within Echvi_0366at 394.666 kb on + strand, within Echvi_0366at 394.720 kb on + strand, within Echvi_0366at 394.911 kb on - strandat 394.911 kb on - strandat 394.914 kb on + strandat 394.915 kb on - strandat 394.915 kb on - strandat 394.939 kb on - strandat 394.967 kb on - strandat 394.974 kb on + strandat 394.975 kb on - strandat 395.030 kb on - strandat 395.065 kb on + strandat 395.069 kb on - strandat 395.108 kb on + strandat 395.173 kb on + strand, within Echvi_0367at 395.174 kb on - strand, within Echvi_0367at 395.242 kb on + strand, within Echvi_0367at 395.267 kb on + strand, within Echvi_0367at 395.292 kb on - strand, within Echvi_0367at 395.328 kb on + strand, within Echvi_0367at 395.338 kb on - strand, within Echvi_0367at 395.359 kb on - strand, within Echvi_0367at 395.381 kb on - strand, within Echvi_0367at 395.388 kb on - strand, within Echvi_0367at 395.406 kb on - strand, within Echvi_0367at 395.414 kb on + strand, within Echvi_0367at 395.415 kb on - strand, within Echvi_0367at 395.416 kb on + strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.417 kb on - strand, within Echvi_0367at 395.502 kb on + strandat 395.563 kb on + strand, within Echvi_0367at 395.576 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.596 kb on + strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.597 kb on - strand, within Echvi_0367at 395.602 kb on + strand, within Echvi_0367at 395.640 kb on - strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.659 kb on + strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.660 kb on - strand, within Echvi_0367at 395.712 kb on - strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.713 kb on + strand, within Echvi_0367at 395.714 kb on - strand, within Echvi_0367at 395.750 kb on - strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.759 kb on + strand, within Echvi_0367at 395.760 kb on - strand, within Echvi_0367at 395.891 kb on - strandat 395.891 kb on - strandat 395.892 kb on + strandat 395.893 kb on - strandat 395.912 kb on - strandat 395.936 kb on + strandat 395.948 kb on + strandat 396.015 kb on + strandat 396.027 kb on + strandat 396.032 kb on + strandat 396.032 kb on + strandat 396.032 kb on + strandat 396.053 kb on + strand, within Echvi_0368at 396.053 kb on + strand, within Echvi_0368at 396.053 kb on + strand, within Echvi_0368at 396.090 kb on + strand, within Echvi_0368at 396.091 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.094 kb on - strand, within Echvi_0368at 396.203 kb on + strandat 396.204 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
394,104 + -1.3
394,135 - +1.3
394,161 + Echvi_0366 0.12 -0.1
394,162 - Echvi_0366 0.12 +1.4
394,163 + Echvi_0366 0.12 +2.9
394,195 - Echvi_0366 0.15 -0.1
394,206 - Echvi_0366 0.16 -0.8
394,263 + Echvi_0366 0.22 +1.1
394,263 + Echvi_0366 0.22 +0.5
394,263 + Echvi_0366 0.22 -0.0
394,263 + Echvi_0366 0.22 -0.1
394,264 - Echvi_0366 0.23 -0.1
394,264 - Echvi_0366 0.23 +1.5
394,440 + Echvi_0366 0.41 +0.5
394,440 + Echvi_0366 0.41 -0.6
394,440 + Echvi_0366 0.41 +0.1
394,542 - Echvi_0366 0.52 -0.5
394,618 - Echvi_0366 0.60 +1.0
394,642 - Echvi_0366 0.63 +0.5
394,660 + Echvi_0366 0.64 +1.0
394,661 - Echvi_0366 0.65 -0.5
394,661 - Echvi_0366 0.65 +0.2
394,666 + Echvi_0366 0.65 -0.9
394,720 + Echvi_0366 0.71 -0.2
394,911 - +0.3
394,911 - -0.2
394,914 + +1.1
394,915 - -0.3
394,915 - +0.6
394,939 - -1.9
394,967 - +0.3
394,974 + -0.7
394,975 - -2.0
395,030 - -0.0
395,065 + +2.3
395,069 - +1.5
395,108 + -1.9
395,173 + Echvi_0367 0.13 -0.4
395,174 - Echvi_0367 0.13 -0.4
395,242 + Echvi_0367 0.20 +0.3
395,267 + Echvi_0367 0.23 +0.7
395,292 - Echvi_0367 0.26 +2.3
395,328 + Echvi_0367 0.30 -0.6
395,338 - Echvi_0367 0.31 +0.5
395,359 - Echvi_0367 0.33 +1.2
395,381 - Echvi_0367 0.36 +0.5
395,388 - Echvi_0367 0.36 +1.9
395,406 - Echvi_0367 0.38 +0.3
395,414 + Echvi_0367 0.39 -0.3
395,415 - Echvi_0367 0.39 -0.1
395,416 + Echvi_0367 0.39 +0.9
395,417 - Echvi_0367 0.40 +0.3
395,417 - Echvi_0367 0.40 -0.8
395,417 - Echvi_0367 0.40 +0.1
395,417 - Echvi_0367 0.40 +2.2
395,417 - Echvi_0367 0.40 -1.5
395,417 - Echvi_0367 0.40 +1.3
395,502 + +1.9
395,563 + Echvi_0367 0.56 +1.3
395,576 + Echvi_0367 0.57 +0.5
395,596 + Echvi_0367 0.59 -0.1
395,596 + Echvi_0367 0.59 -0.2
395,596 + Echvi_0367 0.59 +1.5
395,596 + Echvi_0367 0.59 +0.1
395,596 + Echvi_0367 0.59 +0.3
395,597 - Echvi_0367 0.59 +0.2
395,597 - Echvi_0367 0.59 +0.3
395,602 + Echvi_0367 0.60 +1.0
395,640 - Echvi_0367 0.64 -0.7
395,659 + Echvi_0367 0.66 -0.0
395,659 + Echvi_0367 0.66 +0.1
395,660 - Echvi_0367 0.66 +0.5
395,660 - Echvi_0367 0.66 +0.9
395,712 - Echvi_0367 0.72 -2.5
395,713 + Echvi_0367 0.72 +0.1
395,713 + Echvi_0367 0.72 -1.0
395,713 + Echvi_0367 0.72 -1.5
395,714 - Echvi_0367 0.72 +0.5
395,750 - Echvi_0367 0.76 +0.2
395,759 + Echvi_0367 0.77 -0.8
395,759 + Echvi_0367 0.77 -0.6
395,760 - Echvi_0367 0.77 -0.5
395,891 - +0.6
395,891 - +0.7
395,892 + -0.2
395,893 - +0.3
395,912 - -0.5
395,936 + +0.4
395,948 + -0.1
396,015 + +0.9
396,027 + -0.4
396,032 + +0.5
396,032 + +1.0
396,032 + -0.4
396,053 + Echvi_0368 0.22 +1.3
396,053 + Echvi_0368 0.22 -0.0
396,053 + Echvi_0368 0.22 -0.1
396,090 + Echvi_0368 0.58 -0.1
396,091 - Echvi_0368 0.59 -0.0
396,094 - Echvi_0368 0.62 +0.5
396,094 - Echvi_0368 0.62 -1.8
396,094 - Echvi_0368 0.62 -1.0
396,203 + -0.3
396,204 - +1.3

Or see this region's nucleotide sequence