Experiment: Chlorite 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nlpD and pcm are separated by 139 nucleotides pcm and surE overlap by 7 nucleotides surE and truD overlap by 20 nucleotides
b2742: nlpD - predicted outer membrane lipoprotein (NCBI), at 2,865,636 to 2,866,775
nlpD
b2743: pcm - protein-L-isoaspartate O-methyltransferase (NCBI), at 2,866,915 to 2,867,541
pcm
b2744: surE - acid phosphatase (NCBI), at 2,867,535 to 2,868,296
surE
b2745: truD - tRNA pseudouridine synthase D (NCBI), at 2,868,277 to 2,869,326
truD
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2866.116 kb on + strand, within nlpD at 2866.116 kb on + strand, within nlpD at 2866.149 kb on + strand, within nlpD at 2866.172 kb on + strand, within nlpD at 2866.210 kb on + strand, within nlpD at 2866.212 kb on + strand, within nlpD at 2866.265 kb on - strand, within nlpD at 2866.380 kb on + strand, within nlpD at 2866.380 kb on + strand, within nlpD at 2866.414 kb on - strand, within nlpD at 2866.414 kb on - strand, within nlpD at 2866.436 kb on + strand, within nlpD at 2866.441 kb on + strand, within nlpD at 2866.463 kb on - strand, within nlpD at 2866.463 kb on - strand, within nlpD at 2866.511 kb on - strand, within nlpD at 2866.511 kb on - strand, within nlpD at 2866.658 kb on + strand, within nlpD at 2866.722 kb on - strand at 2866.836 kb on - strand at 2866.998 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.354 kb on + strand, within pcm at 2867.359 kb on - strand, within pcm at 2867.541 kb on - strand at 2867.541 kb on - strand at 2867.616 kb on - strand, within surE at 2867.623 kb on + strand, within surE at 2867.631 kb on + strand, within surE at 2867.672 kb on - strand, within surE at 2867.701 kb on + strand, within surE at 2867.709 kb on - strand, within surE at 2867.747 kb on + strand, within surE at 2867.747 kb on + strand, within surE at 2867.862 kb on - strand, within surE at 2867.862 kb on - strand, within surE at 2867.862 kb on - strand, within surE at 2867.883 kb on + strand, within surE at 2867.883 kb on + strand, within surE at 2868.038 kb on - strand, within surE at 2868.043 kb on - strand, within surE at 2868.043 kb on - strand, within surE at 2868.152 kb on + strand, within surE at 2868.266 kb on - strand at 2868.284 kb on + strand at 2868.332 kb on - strand at 2868.421 kb on - strand, within truD
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.4 mM remove 2,866,116 + nlpD b2742 0.42 +2.5 2,866,116 + nlpD b2742 0.42 +0.6 2,866,149 + nlpD b2742 0.45 -0.1 2,866,172 + nlpD b2742 0.47 +0.5 2,866,210 + nlpD b2742 0.50 +0.4 2,866,212 + nlpD b2742 0.51 -0.1 2,866,265 - nlpD b2742 0.55 +0.5 2,866,380 + nlpD b2742 0.65 +0.5 2,866,380 + nlpD b2742 0.65 +0.5 2,866,414 - nlpD b2742 0.68 +0.3 2,866,414 - nlpD b2742 0.68 +1.9 2,866,436 + nlpD b2742 0.70 +0.6 2,866,441 + nlpD b2742 0.71 +0.5 2,866,463 - nlpD b2742 0.73 -0.1 2,866,463 - nlpD b2742 0.73 +0.9 2,866,511 - nlpD b2742 0.77 +0.4 2,866,511 - nlpD b2742 0.77 +1.3 2,866,658 + nlpD b2742 0.90 -0.3 2,866,722 - -0.1 2,866,836 - -0.1 2,866,998 + pcm b2743 0.13 +0.6 2,867,354 + pcm b2743 0.70 -1.3 2,867,354 + pcm b2743 0.70 +0.9 2,867,354 + pcm b2743 0.70 -1.9 2,867,354 + pcm b2743 0.70 -1.9 2,867,354 + pcm b2743 0.70 -0.5 2,867,359 - pcm b2743 0.71 +0.5 2,867,541 - +0.8 2,867,541 - +0.4 2,867,616 - surE b2744 0.11 +0.5 2,867,623 + surE b2744 0.12 +0.5 2,867,631 + surE b2744 0.13 -0.1 2,867,672 - surE b2744 0.18 +0.3 2,867,701 + surE b2744 0.22 -0.1 2,867,709 - surE b2744 0.23 -1.0 2,867,747 + surE b2744 0.28 +0.3 2,867,747 + surE b2744 0.28 -0.1 2,867,862 - surE b2744 0.43 -0.4 2,867,862 - surE b2744 0.43 -0.4 2,867,862 - surE b2744 0.43 +0.5 2,867,883 + surE b2744 0.46 -0.1 2,867,883 + surE b2744 0.46 -0.5 2,868,038 - surE b2744 0.66 +1.0 2,868,043 - surE b2744 0.67 +0.3 2,868,043 - surE b2744 0.67 +0.0 2,868,152 + surE b2744 0.81 +0.0 2,868,266 - -0.6 2,868,284 + -0.7 2,868,332 - +0.2 2,868,421 - truD b2745 0.14 +1.2
Or see this region's nucleotide sequence