Experiment: Chlorite 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acpS and pdxJ overlap by 1 nucleotides pdxJ and recO are separated by 11 nucleotides recO and era are separated by 11 nucleotides era and rnc overlap by 4 nucleotides
b2563: acpS - 4'-phosphopantetheinyl transferase (NCBI), at 2,698,640 to 2,699,020
acpS
b2564: pdxJ - pyridoxal phosphate biosynthetic protein (NCBI), at 2,699,020 to 2,699,751
pdxJ
b2565: recO - DNA repair protein RecO (NCBI), at 2,699,763 to 2,700,491
recO
b2566: era - GTP-binding protein Era (NCBI), at 2,700,503 to 2,701,408
era
b2567: rnc - ribonuclease III (NCBI), at 2,701,405 to 2,702,085
rnc
Position (kb)
2699
2700
2701 Strain fitness (log2 ratio)
-2
-1
0
1 at 2699.085 kb on - strand at 2699.173 kb on - strand, within pdxJ at 2699.178 kb on - strand, within pdxJ at 2699.290 kb on - strand, within pdxJ at 2699.465 kb on + strand, within pdxJ at 2699.465 kb on + strand, within pdxJ at 2699.504 kb on - strand, within pdxJ at 2699.519 kb on + strand, within pdxJ at 2699.536 kb on + strand, within pdxJ at 2699.536 kb on + strand, within pdxJ at 2699.713 kb on + strand at 2699.774 kb on - strand at 2699.774 kb on - strand at 2699.823 kb on + strand at 2699.924 kb on + strand, within recO at 2700.066 kb on - strand, within recO at 2700.126 kb on + strand, within recO at 2700.128 kb on + strand, within recO at 2700.219 kb on + strand, within recO at 2700.280 kb on - strand, within recO at 2700.280 kb on - strand, within recO at 2700.326 kb on - strand, within recO at 2700.359 kb on - strand, within recO at 2700.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.4 mM remove 2,699,085 - -0.5 2,699,173 - pdxJ b2564 0.21 -0.3 2,699,178 - pdxJ b2564 0.22 -0.8 2,699,290 - pdxJ b2564 0.37 +0.6 2,699,465 + pdxJ b2564 0.61 -1.0 2,699,465 + pdxJ b2564 0.61 +1.3 2,699,504 - pdxJ b2564 0.66 +0.2 2,699,519 + pdxJ b2564 0.68 -1.8 2,699,536 + pdxJ b2564 0.70 +1.3 2,699,536 + pdxJ b2564 0.70 +0.7 2,699,713 + -0.3 2,699,774 - +1.7 2,699,774 - +0.3 2,699,823 + -0.5 2,699,924 + recO b2565 0.22 -0.2 2,700,066 - recO b2565 0.42 -0.3 2,700,126 + recO b2565 0.50 +0.1 2,700,128 + recO b2565 0.50 -0.7 2,700,219 + recO b2565 0.63 -1.5 2,700,280 - recO b2565 0.71 +0.2 2,700,280 - recO b2565 0.71 -0.3 2,700,326 - recO b2565 0.77 -1.3 2,700,359 - recO b2565 0.82 -1.3 2,700,467 - -0.3
Or see this region's nucleotide sequence