Strain Fitness in Escherichia coli BW25113 around b0876

Experiment: Chlorite 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaqpZ and ybjD are separated by 425 nucleotidesybjD and ybjX overlap by 4 nucleotides b0875: aqpZ - aquaporin Z (NCBI), at 914,575 to 915,270 aqpZ b0876: ybjD - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 915,696 to 917,354 ybjD b0877: ybjX - hypothetical protein (NCBI), at 917,351 to 918,343 ybjX Position (kb) 915 916 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 914.702 kb on - strand, within aqpZat 914.720 kb on - strand, within aqpZat 914.757 kb on + strand, within aqpZat 914.764 kb on + strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.784 kb on + strand, within aqpZat 914.911 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 915.193 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.226 kb on - strandat 915.226 kb on - strandat 915.279 kb on + strandat 915.279 kb on + strandat 915.437 kb on - strandat 915.461 kb on - strandat 915.461 kb on - strandat 915.473 kb on - strandat 915.570 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.647 kb on + strandat 915.647 kb on - strandat 915.700 kb on + strandat 915.705 kb on - strandat 915.710 kb on + strandat 915.783 kb on - strandat 915.794 kb on + strandat 915.817 kb on + strandat 915.817 kb on + strandat 915.841 kb on + strandat 915.909 kb on + strand, within ybjDat 915.970 kb on - strand, within ybjDat 916.056 kb on - strand, within ybjDat 916.212 kb on + strand, within ybjDat 916.330 kb on + strand, within ybjDat 916.334 kb on + strand, within ybjDat 916.374 kb on - strand, within ybjDat 916.463 kb on + strand, within ybjDat 916.463 kb on + strand, within ybjDat 916.540 kb on - strand, within ybjDat 916.546 kb on + strand, within ybjDat 916.717 kb on - strand, within ybjDat 916.717 kb on - strand, within ybjDat 916.823 kb on + strand, within ybjDat 916.823 kb on + strand, within ybjDat 916.869 kb on + strand, within ybjDat 916.869 kb on + strand, within ybjDat 916.989 kb on + strand, within ybjDat 917.422 kb on - strandat 917.467 kb on + strand, within ybjXat 917.467 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.643 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.775 kb on + strand, within ybjXat 917.828 kb on + strand, within ybjXat 917.838 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.891 kb on - strand, within ybjXat 917.948 kb on - strand, within ybjXat 918.050 kb on - strand, within ybjXat 918.059 kb on + strand, within ybjXat 918.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.4 mM
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914,702 - aqpZ b0875 0.18 +0.8
914,720 - aqpZ b0875 0.21 +0.1
914,757 + aqpZ b0875 0.26 -1.8
914,764 + aqpZ b0875 0.27 +1.9
914,767 - aqpZ b0875 0.28 +0.1
914,767 - aqpZ b0875 0.28 -0.4
914,784 + aqpZ b0875 0.30 +0.9
914,911 + aqpZ b0875 0.48 -0.4
914,941 + aqpZ b0875 0.53 +1.1
914,941 + aqpZ b0875 0.53 -2.8
914,998 + aqpZ b0875 0.61 -0.7
914,998 + aqpZ b0875 0.61 -1.4
915,193 + aqpZ b0875 0.89 -1.3
915,198 + aqpZ b0875 0.90 +1.6
915,198 + aqpZ b0875 0.90 +0.4
915,198 + aqpZ b0875 0.90 +2.1
915,203 + -0.1
915,203 + -0.4
915,203 + -0.4
915,203 + -0.4
915,206 - -0.2
915,206 - -0.6
915,206 - +3.1
915,206 - -0.4
915,206 - +0.9
915,226 - +0.1
915,226 - +0.7
915,279 + +0.6
915,279 + -0.3
915,437 - +0.6
915,461 - +1.3
915,461 - -0.3
915,473 - +0.6
915,570 - -1.2
915,616 - -0.4
915,616 - -1.0
915,616 - +0.1
915,616 - +0.1
915,647 + +0.1
915,647 - -0.1
915,700 + +0.6
915,705 - -0.0
915,710 + +0.6
915,783 - +0.3
915,794 + -1.0
915,817 + +0.3
915,817 + +0.8
915,841 + -0.1
915,909 + ybjD b0876 0.13 +0.3
915,970 - ybjD b0876 0.17 +0.3
916,056 - ybjD b0876 0.22 +0.2
916,212 + ybjD b0876 0.31 +0.4
916,330 + ybjD b0876 0.38 -0.4
916,334 + ybjD b0876 0.38 +0.4
916,374 - ybjD b0876 0.41 +0.7
916,463 + ybjD b0876 0.46 +0.3
916,463 + ybjD b0876 0.46 +0.6
916,540 - ybjD b0876 0.51 -0.4
916,546 + ybjD b0876 0.51 +1.9
916,717 - ybjD b0876 0.62 +0.9
916,717 - ybjD b0876 0.62 +1.8
916,823 + ybjD b0876 0.68 +0.8
916,823 + ybjD b0876 0.68 -0.6
916,869 + ybjD b0876 0.71 +0.3
916,869 + ybjD b0876 0.71 +0.4
916,989 + ybjD b0876 0.78 +0.6
917,422 - -0.4
917,467 + ybjX b0877 0.12 +0.3
917,467 + ybjX b0877 0.12 +0.6
917,528 + ybjX b0877 0.18 -0.4
917,528 + ybjX b0877 0.18 +0.5
917,643 - ybjX b0877 0.29 +0.4
917,658 - ybjX b0877 0.31 +0.6
917,658 - ybjX b0877 0.31 +1.6
917,775 + ybjX b0877 0.43 +0.7
917,828 + ybjX b0877 0.48 +0.7
917,838 + ybjX b0877 0.49 +0.1
917,878 + ybjX b0877 0.53 -3.3
917,878 + ybjX b0877 0.53 +0.4
917,891 - ybjX b0877 0.54 +0.9
917,948 - ybjX b0877 0.60 +0.6
918,050 - ybjX b0877 0.70 -0.6
918,059 + ybjX b0877 0.71 +0.4
918,271 + +0.2

Or see this region's nucleotide sequence