Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05177 and PFR28_05178 are separated by 86 nucleotides PFR28_05178 and PFR28_05179 overlap by 4 nucleotides PFR28_05179 and PFR28_05180 are separated by 7 nucleotides PFR28_05180 and PFR28_05181 are separated by 9 nucleotides PFR28_05181 and PFR28_05182 are separated by 86 nucleotides
PFR28_05177: PFR28_05177 - Urease subunit alpha, at 5,926,133 to 5,927,887
_05177
PFR28_05178: PFR28_05178 - Urease subunit beta, at 5,927,974 to 5,928,279
_05178
PFR28_05179: PFR28_05179 - Acetyltransferase, at 5,928,276 to 5,928,809
_05179
PFR28_05180: PFR28_05180 - L-methionine sulfoximine/L-methionine sulfone acetyltransferase, at 5,928,817 to 5,929,347
_05180
PFR28_05181: PFR28_05181 - Urease subunit gamma, at 5,929,357 to 5,929,659
_05181
PFR28_05182: PFR28_05182 - Urease accessory protein UreD, at 5,929,746 to 5,930,597
_05182
Position (kb) 5928
5929 Strain fitness (log2 ratio) -2
-1
0
1 at 5927.435 kb on - strand, within PFR28_05177 at 5927.435 kb on - strand, within PFR28_05177 at 5927.721 kb on + strand at 5927.721 kb on + strand at 5927.811 kb on + strand at 5927.811 kb on + strand at 5927.811 kb on + strand at 5927.811 kb on + strand at 5927.812 kb on - strand at 5927.812 kb on - strand at 5927.812 kb on - strand at 5927.812 kb on - strand at 5927.975 kb on + strand at 5927.975 kb on + strand at 5927.975 kb on + strand at 5927.975 kb on + strand at 5927.976 kb on - strand at 5927.976 kb on - strand at 5927.976 kb on - strand at 5927.976 kb on - strand at 5927.976 kb on - strand at 5928.264 kb on - strand at 5928.301 kb on + strand at 5928.301 kb on + strand at 5928.301 kb on + strand at 5928.301 kb on + strand at 5928.302 kb on - strand at 5928.302 kb on - strand at 5928.304 kb on + strand at 5928.304 kb on + strand at 5928.304 kb on + strand at 5928.305 kb on - strand at 5928.305 kb on - strand at 5928.305 kb on - strand at 5928.305 kb on - strand at 5928.322 kb on + strand at 5928.322 kb on + strand at 5928.322 kb on + strand at 5928.322 kb on + strand at 5928.322 kb on + strand at 5928.322 kb on + strand at 5928.346 kb on + strand, within PFR28_05179 at 5928.389 kb on - strand, within PFR28_05179 at 5928.427 kb on + strand, within PFR28_05179 at 5928.427 kb on + strand, within PFR28_05179 at 5928.428 kb on - strand, within PFR28_05179 at 5928.665 kb on - strand, within PFR28_05179 at 5928.761 kb on - strand at 5929.086 kb on - strand, within PFR28_05180 at 5929.086 kb on - strand, within PFR28_05180 at 5929.086 kb on - strand, within PFR28_05180 at 5929.289 kb on + strand, within PFR28_05180 at 5929.290 kb on - strand, within PFR28_05180 at 5929.290 kb on - strand, within PFR28_05180 at 5929.341 kb on - strand at 5929.547 kb on + strand, within PFR28_05181 at 5929.547 kb on + strand, within PFR28_05181 at 5929.547 kb on + strand, within PFR28_05181 at 5929.548 kb on - strand, within PFR28_05181 at 5929.671 kb on - strand at 5929.671 kb on - strand at 5929.680 kb on + strand at 5929.680 kb on + strand at 5929.681 kb on - strand at 5929.685 kb on - strand at 5929.685 kb on - strand at 5929.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 5,927,435 - PFR28_05177 0.74 -1.0 5,927,435 - PFR28_05177 0.74 -1.1 5,927,721 + -0.1 5,927,721 + -0.8 5,927,811 + +0.9 5,927,811 + +0.4 5,927,811 + +0.1 5,927,811 + -0.2 5,927,812 - -0.6 5,927,812 - -0.0 5,927,812 - +0.2 5,927,812 - -0.7 5,927,975 + +0.3 5,927,975 + -0.5 5,927,975 + +0.4 5,927,975 + -0.3 5,927,976 - -1.0 5,927,976 - -0.2 5,927,976 - -0.1 5,927,976 - -1.0 5,927,976 - -1.0 5,928,264 - +0.6 5,928,301 + -1.7 5,928,301 + +1.0 5,928,301 + -0.5 5,928,301 + -0.1 5,928,302 - -1.6 5,928,302 - +1.1 5,928,304 + -0.9 5,928,304 + -0.8 5,928,304 + -0.5 5,928,305 - +0.2 5,928,305 - +0.1 5,928,305 - +0.4 5,928,305 - -0.0 5,928,322 + +0.4 5,928,322 + -0.2 5,928,322 + -0.6 5,928,322 + +0.7 5,928,322 + +0.2 5,928,322 + -1.4 5,928,346 + PFR28_05179 0.13 +0.9 5,928,389 - PFR28_05179 0.21 -0.5 5,928,427 + PFR28_05179 0.28 -0.2 5,928,427 + PFR28_05179 0.28 +0.2 5,928,428 - PFR28_05179 0.28 -0.1 5,928,665 - PFR28_05179 0.73 +1.4 5,928,761 - -0.3 5,929,086 - PFR28_05180 0.51 +0.4 5,929,086 - PFR28_05180 0.51 -1.9 5,929,086 - PFR28_05180 0.51 -0.7 5,929,289 + PFR28_05180 0.89 +0.7 5,929,290 - PFR28_05180 0.89 -1.0 5,929,290 - PFR28_05180 0.89 -0.5 5,929,341 - +0.1 5,929,547 + PFR28_05181 0.63 +0.2 5,929,547 + PFR28_05181 0.63 +0.5 5,929,547 + PFR28_05181 0.63 +0.0 5,929,548 - PFR28_05181 0.63 -0.1 5,929,671 - +0.9 5,929,671 - -0.2 5,929,680 + -0.2 5,929,680 + +0.5 5,929,681 - -0.7 5,929,685 - +0.1 5,929,685 - -2.2 5,929,685 - +0.0
Or see this region's nucleotide sequence