Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05070 and PFR28_05071 overlap by 17 nucleotides PFR28_05071 and PFR28_05072 overlap by 1 nucleotides PFR28_05072 and PFR28_05073 overlap by 4 nucleotides
PFR28_05070: PFR28_05070 - nebramycin 5, at 5,807,191 to 5,808,948
_05070
PFR28_05071: PFR28_05071 - D-inositol-3-phosphate glycosyltransferase, at 5,808,932 to 5,810,062
_05071
PFR28_05072: PFR28_05072 - hypothetical protein, at 5,810,062 to 5,810,958
_05072
PFR28_05073: PFR28_05073 - hypothetical protein, at 5,810,955 to 5,812,400
_05073
Position (kb) 5808
5809
5810
5811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5808.107 kb on + strand, within PFR28_05070 at 5808.107 kb on + strand, within PFR28_05070 at 5808.107 kb on + strand, within PFR28_05070 at 5808.256 kb on + strand, within PFR28_05070 at 5808.745 kb on + strand, within PFR28_05070 at 5808.745 kb on + strand, within PFR28_05070 at 5808.865 kb on + strand at 5808.865 kb on + strand at 5808.865 kb on + strand at 5808.865 kb on + strand at 5808.883 kb on + strand at 5808.883 kb on + strand at 5809.124 kb on + strand, within PFR28_05071 at 5809.235 kb on + strand, within PFR28_05071 at 5809.235 kb on + strand, within PFR28_05071 at 5809.331 kb on + strand, within PFR28_05071 at 5809.788 kb on + strand, within PFR28_05071 at 5809.900 kb on + strand, within PFR28_05071 at 5809.900 kb on + strand, within PFR28_05071 at 5810.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 5,808,107 + PFR28_05070 0.52 +0.9 5,808,107 + PFR28_05070 0.52 +4.0 5,808,107 + PFR28_05070 0.52 -1.9 5,808,256 + PFR28_05070 0.61 -1.3 5,808,745 + PFR28_05070 0.88 -0.1 5,808,745 + PFR28_05070 0.88 +1.9 5,808,865 + +1.7 5,808,865 + +0.0 5,808,865 + -0.9 5,808,865 + -0.5 5,808,883 + -0.3 5,808,883 + +0.0 5,809,124 + PFR28_05071 0.17 -2.9 5,809,235 + PFR28_05071 0.27 -2.5 5,809,235 + PFR28_05071 0.27 -1.6 5,809,331 + PFR28_05071 0.35 -3.5 5,809,788 + PFR28_05071 0.76 -1.7 5,809,900 + PFR28_05071 0.86 -1.2 5,809,900 + PFR28_05071 0.86 -3.3 5,810,954 + +0.4
Or see this region's nucleotide sequence