Strain Fitness in Pseudomonas sp. RS175 around PFR28_05058

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sn-glycero-3-phosphocholine (C) 10 mM
5,786,575	+				-0.7
5,786,575	+				-1.1
5,786,575	+				+1.4
5,786,576	-				-0.5
5,786,576	-				+0.2
5,786,576	-				+1.5
5,786,576	-				+0.2
5,786,595	+				+1.8
5,786,596	-				-0.3
5,786,636	+				-0.3
5,786,636	+				-0.1
5,786,636	+				-0.8
5,786,636	+				+0.0
5,786,636	+				+1.4
5,786,636	+				+2.4
5,786,637	-				-0.4
5,786,637	-				-0.5
5,786,651	+				+0.2
5,786,651	+				-0.2
5,786,651	+				-0.3
5,786,651	+				-0.9
5,786,651	+				-0.7
5,786,651	+				+2.6
5,786,651	+				+0.8
5,786,651	+				-0.5
5,786,651	+				+0.2
5,786,651	+				-0.2
5,786,651	+				-0.4
5,786,651	+				+1.8
5,786,651	+				-1.5
5,786,651	+				-1.5
5,786,651	+				+0.0
5,786,651	+				+0.1
5,786,651	+				+2.0
5,786,651	+				-0.2
5,786,651	+				+0.3
5,786,651	+				-0.1
5,786,651	+				-0.7
5,786,651	+				+0.8
5,786,651	+				-0.5
5,786,651	+				-0.8
5,786,651	+				+0.3
5,786,651	+				+0.9
5,786,651	+				+0.2
5,786,651	+				+0.2
5,786,651	+				+0.0
5,786,651	+				-2.0
5,786,651	+				-0.1
5,786,651	+				+1.0
5,786,651	+				-0.5
5,786,651	+				+0.2
5,786,651	+				+0.1
5,786,651	+				+0.3
5,786,651	+				-0.1
5,786,651	+				+0.6
5,786,652	-				+0.3
5,786,652	-				+0.1
5,786,652	-				+0.1
5,786,652	-				-2.1
5,786,652	-				-0.8
5,786,652	-				+0.7
5,786,652	-				-0.2
5,786,652	-				-1.0
5,786,652	-				+0.4
5,786,652	-				-0.1
5,786,652	-				-1.0
5,786,652	-				+0.1
5,786,652	-				+0.8
5,786,652	-				+0.5
5,786,652	-				+1.2
5,786,652	-				+0.5
5,786,652	-				-1.9
5,786,652	-				-2.0
5,786,652	-				+0.1
5,786,652	-				+0.2
5,786,652	-				-0.5
5,786,652	-				-2.0
5,786,749	+				+0.5
5,786,749	+				+0.2
5,786,750	-				-1.1
5,786,773	+				+0.8
5,786,773	+				-0.7
5,786,773	+				+0.5
5,786,774	-		PFR28_05057	0.10	-0.5
5,786,774	-		PFR28_05057	0.10	-0.4
5,786,800	+		PFR28_05057	0.14	-2.1
5,786,800	+		PFR28_05057	0.14	+0.1
5,786,800	+		PFR28_05057	0.14	+0.3
5,786,801	-		PFR28_05057	0.14	-0.1
5,786,920	+		PFR28_05057	0.33	+0.8
5,786,920	+		PFR28_05057	0.33	+1.2
5,786,920	+		PFR28_05057	0.33	+0.2
5,786,921	-		PFR28_05057	0.33	+1.0
5,786,921	-		PFR28_05057	0.33	-0.5
5,786,921	-		PFR28_05057	0.33	-0.4
5,786,921	-		PFR28_05057	0.33	+0.7
5,786,921	-		PFR28_05057	0.33	-0.6
5,786,921	-		PFR28_05057	0.33	+0.2
5,786,921	-		PFR28_05057	0.33	+1.5
5,786,936	-		PFR28_05057	0.35	-0.1
5,787,016	+		PFR28_05057	0.47	-0.1
5,787,016	+		PFR28_05057	0.47	-0.6
5,787,017	-		PFR28_05057	0.48	+1.1
5,787,017	-		PFR28_05057	0.48	+0.2
5,787,017	-		PFR28_05057	0.48	-0.5
5,787,017	-		PFR28_05057	0.48	-0.7
5,787,017	-		PFR28_05057	0.48	-0.8
5,787,037	+		PFR28_05057	0.51	+0.0
5,787,037	+		PFR28_05057	0.51	-0.5
5,787,037	+		PFR28_05057	0.51	+0.0
5,787,092	-		PFR28_05057	0.59	-0.1
5,787,092	-		PFR28_05057	0.59	+0.1
5,787,092	-		PFR28_05057	0.59	-0.1
5,787,092	-		PFR28_05057	0.59	-0.2
5,787,108	-		PFR28_05057	0.62	-1.5
5,787,108	-		PFR28_05057	0.62	-0.5
5,787,121	+		PFR28_05057	0.64	+1.1
5,787,220	-		PFR28_05057	0.79	+0.7
5,787,312	-				+0.3
5,787,312	-				-1.1
5,787,392	+				-1.1
5,787,424	-				+0.5
5,787,750	-		PFR28_05058	0.10	+0.0
5,787,750	-		PFR28_05058	0.10	+0.5
5,787,764	+		PFR28_05058	0.11	+0.1
5,788,190	+		PFR28_05058	0.27	-0.9
5,788,190	+		PFR28_05058	0.27	+1.5
5,788,190	+		PFR28_05058	0.27	+0.5
5,788,190	+		PFR28_05058	0.27	+0.5
5,788,191	-		PFR28_05058	0.27	+0.1
5,788,191	-		PFR28_05058	0.27	-0.2
5,788,253	+		PFR28_05058	0.29	+0.2
5,788,253	+		PFR28_05058	0.29	+0.1
5,788,253	+		PFR28_05058	0.29	+0.8
5,788,254	-		PFR28_05058	0.29	-0.7
5,788,254	-		PFR28_05058	0.29	+0.1
5,788,254	-		PFR28_05058	0.29	+0.9
5,788,754	+		PFR28_05058	0.48	+0.4
5,788,754	+		PFR28_05058	0.48	+0.4
5,788,755	-		PFR28_05058	0.48	+0.3
5,788,755	-		PFR28_05058	0.48	+0.1
5,788,755	-		PFR28_05058	0.48	-1.6
5,788,808	+		PFR28_05058	0.50	+0.6
5,788,808	+		PFR28_05058	0.50	-1.1
5,788,808	+		PFR28_05058	0.50	+0.6
5,788,808	+		PFR28_05058	0.50	-0.3
5,788,808	+		PFR28_05058	0.50	-0.0
5,788,808	+		PFR28_05058	0.50	-0.0
5,788,808	+		PFR28_05058	0.50	+0.5
5,788,809	-		PFR28_05058	0.50	+1.2
5,788,809	-		PFR28_05058	0.50	-0.2
5,788,809	-		PFR28_05058	0.50	+1.5
5,788,809	-		PFR28_05058	0.50	+0.3
5,788,809	-		PFR28_05058	0.50	+0.3
5,788,809	-		PFR28_05058	0.50	+1.2
5,788,809	-		PFR28_05058	0.50	+0.0
5,788,820	+		PFR28_05058	0.50	+1.2
5,788,820	+		PFR28_05058	0.50	+0.5
5,788,820	+		PFR28_05058	0.50	-0.1
5,788,821	-		PFR28_05058	0.50	+0.5
5,788,821	-		PFR28_05058	0.50	+0.9
5,788,821	-		PFR28_05058	0.50	-0.3
5,788,847	+		PFR28_05058	0.51	+0.2
5,788,848	-		PFR28_05058	0.51	+0.8
5,788,848	-		PFR28_05058	0.51	+1.0
5,788,848	-		PFR28_05058	0.51	+0.5
5,788,848	-		PFR28_05058	0.51	+1.1
5,789,027	+		PFR28_05058	0.58	-0.0
5,789,027	+		PFR28_05058	0.58	+0.8
5,789,028	-		PFR28_05058	0.58	+1.7
5,789,060	+		PFR28_05058	0.59	-0.1
5,789,060	+		PFR28_05058	0.59	+0.9
5,789,060	+		PFR28_05058	0.59	-0.1
5,789,060	+		PFR28_05058	0.59	+0.4
5,789,061	-		PFR28_05058	0.59	-0.0
5,789,061	-		PFR28_05058	0.59	+0.2
5,789,061	-		PFR28_05058	0.59	-0.6
5,789,306	-		PFR28_05058	0.68	-0.2
5,789,414	+		PFR28_05058	0.72	+0.6
5,789,414	+		PFR28_05058	0.72	+0.4
5,789,456	+		PFR28_05058	0.74	+0.9
5,789,457	-		PFR28_05058	0.74	-0.0
5,789,457	-		PFR28_05058	0.74	+0.8
5,789,475	+		PFR28_05058	0.74	+0.1
5,789,475	+		PFR28_05058	0.74	+1.0
5,789,477	+		PFR28_05058	0.75	-0.2
5,789,477	+		PFR28_05058	0.75	-0.4
5,789,477	+		PFR28_05058	0.75	+0.7
5,789,541	-		PFR28_05058	0.77	+0.8
5,789,541	-		PFR28_05058	0.77	-0.1
5,789,541	-		PFR28_05058	0.77	+0.6
5,789,603	+		PFR28_05058	0.79	-0.3
5,789,603	+		PFR28_05058	0.79	+0.3
5,789,604	-		PFR28_05058	0.79	+1.0
5,789,749	-		PFR28_05058	0.85	+0.8
5,789,822	+		PFR28_05058	0.87	-0.9
5,789,822	+		PFR28_05058	0.87	+0.4
5,789,822	+		PFR28_05058	0.87	+0.2
5,789,822	+		PFR28_05058	0.87	+0.9
5,789,822	+		PFR28_05058	0.87	+0.1
5,789,823	-		PFR28_05058	0.87	-0.1
5,789,823	-		PFR28_05058	0.87	-0.2
5,789,823	-		PFR28_05058	0.87	+0.0
5,789,823	-		PFR28_05058	0.87	+0.7
5,789,823	-		PFR28_05058	0.87	-0.1
5,789,888	+		PFR28_05058	0.90	+0.8
5,789,889	-		PFR28_05058	0.90	-0.9
5,789,937	-				+0.1
5,789,966	+				-0.4
5,789,967	-				+1.1
5,790,014	+				+0.3
5,790,015	-				+1.2
5,790,015	-				-0.8
5,790,085	-				-0.2
5,790,085	-				+2.9
5,790,085	-				-0.3
5,790,106	+				+0.2
5,790,107	-				+0.6
5,790,107	-				+0.2
5,790,118	+				-0.6
5,790,118	+				+1.2
5,790,119	-				-0.4
5,790,119	-				+0.5
5,790,280	-				-0.0
5,790,280	-				-0.0
5,790,280	-				+0.8
5,790,280	-				-0.0
5,790,280	-				-0.4
5,790,281	+				-0.4
5,790,281	+				+0.4
5,790,281	+				-0.4
5,790,486	-				-1.2
5,790,531	+		PFR28_05059	0.13	-0.4
5,790,551	+		PFR28_05059	0.14	+0.9
5,790,551	+		PFR28_05059	0.14	-0.4
5,790,551	+		PFR28_05059	0.14	+0.2
5,790,551	+		PFR28_05059	0.14	-0.3
5,790,552	-		PFR28_05059	0.14	-0.4
5,790,552	-		PFR28_05059	0.14	+0.6
5,790,942	+		PFR28_05059	0.42	+0.1
5,790,942	+		PFR28_05059	0.42	+0.4
5,790,942	+		PFR28_05059	0.42	+0.0
5,790,942	+		PFR28_05059	0.42	-0.7
5,790,942	+		PFR28_05059	0.42	-0.2
5,790,942	+		PFR28_05059	0.42	+0.4
5,790,942	+		PFR28_05059	0.42	+0.3
5,790,942	+		PFR28_05059	0.42	+0.7
5,790,942	+		PFR28_05059	0.42	-0.8
5,790,942	+		PFR28_05059	0.42	-0.5
5,790,942	+		PFR28_05059	0.42	-0.0
5,790,942	+		PFR28_05059	0.42	+0.1
5,790,942	+		PFR28_05059	0.42	-0.3
5,790,942	+		PFR28_05059	0.42	+0.5
5,790,942	+		PFR28_05059	0.42	-0.9
5,790,942	+		PFR28_05059	0.42	-0.1
5,790,942	+		PFR28_05059	0.42	-0.1
5,790,942	+		PFR28_05059	0.42	-0.3
5,790,942	+		PFR28_05059	0.42	-1.0
5,790,942	+		PFR28_05059	0.42	-0.4
5,790,942	+		PFR28_05059	0.42	-0.2
5,790,942	+		PFR28_05059	0.42	-0.0
5,790,943	-		PFR28_05059	0.42	-0.2
5,790,943	-		PFR28_05059	0.42	+1.1
5,790,943	-		PFR28_05059	0.42	+0.5
5,790,943	-		PFR28_05059	0.42	+0.5
5,790,943	-		PFR28_05059	0.42	-0.3
5,790,943	-		PFR28_05059	0.42	+0.4
5,790,943	-		PFR28_05059	0.42	-0.1
5,790,943	-		PFR28_05059	0.42	-0.6
5,790,943	-		PFR28_05059	0.42	-0.3
5,790,943	-		PFR28_05059	0.42	+0.3
5,790,943	-		PFR28_05059	0.42	+0.8
5,790,943	-		PFR28_05059	0.42	-0.0
5,790,943	-		PFR28_05059	0.42	-0.0
5,790,943	-		PFR28_05059	0.42	-0.1
5,790,944	+		PFR28_05059	0.42	-0.5
5,790,944	+		PFR28_05059	0.42	-1.2
5,790,944	+		PFR28_05059	0.42	+0.4
5,790,944	+		PFR28_05059	0.42	+0.2
5,790,945	-		PFR28_05059	0.42	-0.8
5,790,945	-		PFR28_05059	0.42	+0.1
5,790,950	+		PFR28_05059	0.43	-0.5
5,790,951	-		PFR28_05059	0.43	-0.0
5,790,951	-		PFR28_05059	0.43	+0.1
5,791,028	+		PFR28_05059	0.48	+0.5
5,791,050	-		PFR28_05059	0.50	+0.2
5,791,089	+		PFR28_05059	0.53	-0.1
5,791,089	+		PFR28_05059	0.53	-0.7
5,791,090	-		PFR28_05059	0.53	-0.5
5,791,121	+		PFR28_05059	0.55	+0.0
5,791,121	+		PFR28_05059	0.55	+0.5
5,791,121	+		PFR28_05059	0.55	-0.5
5,791,121	+		PFR28_05059	0.55	-0.1
5,791,121	+		PFR28_05059	0.55	-0.2
5,791,121	+		PFR28_05059	0.55	+0.5
5,791,121	+		PFR28_05059	0.55	-0.4
5,791,121	+		PFR28_05059	0.55	-0.3
5,791,121	+		PFR28_05059	0.55	-0.5
5,791,122	-		PFR28_05059	0.55	+0.5
5,791,122	-		PFR28_05059	0.55	-0.3
5,791,122	-		PFR28_05059	0.55	+1.2
5,791,122	-		PFR28_05059	0.55	+0.6
5,791,122	-		PFR28_05059	0.55	-0.6
5,791,122	-		PFR28_05059	0.55	-0.3
5,791,122	-		PFR28_05059	0.55	+0.4
5,791,122	-		PFR28_05059	0.55	-0.2
5,791,122	-		PFR28_05059	0.55	-0.1
5,791,153	-		PFR28_05059	0.57	+0.2