Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04676 and PFR28_04677 are separated by 8 nucleotides PFR28_04677 and PFR28_04678 are separated by 30 nucleotides PFR28_04678 and PFR28_04679 are separated by 86 nucleotides
PFR28_04676: PFR28_04676 - hypothetical protein, at 5,334,912 to 5,336,075
_04676
PFR28_04677: PFR28_04677 - 2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase, at 5,336,084 to 5,336,716
_04677
PFR28_04678: PFR28_04678 - hypothetical protein, at 5,336,747 to 5,337,157
_04678
PFR28_04679: PFR28_04679 - Quinone oxidoreductase 2, at 5,337,244 to 5,338,083
_04679
Position (kb) 5336
5337
5338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5335.775 kb on + strand, within PFR28_04676 at 5335.775 kb on + strand, within PFR28_04676 at 5335.775 kb on + strand, within PFR28_04676 at 5335.776 kb on - strand, within PFR28_04676 at 5335.776 kb on - strand, within PFR28_04676 at 5335.801 kb on - strand, within PFR28_04676 at 5335.801 kb on - strand, within PFR28_04676 at 5335.859 kb on + strand, within PFR28_04676 at 5335.859 kb on + strand, within PFR28_04676 at 5335.859 kb on + strand, within PFR28_04676 at 5335.860 kb on - strand, within PFR28_04676 at 5335.860 kb on - strand, within PFR28_04676 at 5335.860 kb on - strand, within PFR28_04676 at 5335.914 kb on + strand, within PFR28_04676 at 5335.914 kb on + strand, within PFR28_04676 at 5335.914 kb on + strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.915 kb on - strand, within PFR28_04676 at 5335.929 kb on - strand, within PFR28_04676 at 5335.929 kb on - strand, within PFR28_04676 at 5335.997 kb on + strand at 5335.997 kb on + strand at 5335.997 kb on + strand at 5335.998 kb on - strand at 5335.998 kb on - strand at 5335.998 kb on - strand at 5336.004 kb on + strand at 5336.004 kb on + strand at 5336.004 kb on + strand at 5336.005 kb on - strand at 5336.005 kb on - strand at 5336.005 kb on - strand at 5336.005 kb on - strand at 5336.005 kb on - strand at 5336.005 kb on - strand at 5336.055 kb on + strand at 5336.055 kb on + strand at 5336.055 kb on + strand at 5336.055 kb on + strand at 5336.055 kb on + strand at 5336.055 kb on + strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.056 kb on - strand at 5336.057 kb on + strand at 5336.057 kb on + strand at 5336.057 kb on + strand at 5336.057 kb on + strand at 5336.057 kb on + strand at 5336.057 kb on + strand at 5336.058 kb on - strand at 5336.058 kb on - strand at 5336.058 kb on - strand at 5336.422 kb on + strand, within PFR28_04677 at 5336.422 kb on + strand, within PFR28_04677 at 5336.422 kb on + strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.423 kb on - strand, within PFR28_04677 at 5336.613 kb on + strand, within PFR28_04677 at 5336.613 kb on + strand, within PFR28_04677 at 5336.668 kb on + strand at 5336.668 kb on + strand at 5337.098 kb on + strand, within PFR28_04678 at 5337.098 kb on + strand, within PFR28_04678 at 5337.098 kb on + strand, within PFR28_04678 at 5337.099 kb on - strand, within PFR28_04678 at 5337.099 kb on - strand, within PFR28_04678 at 5337.099 kb on - strand, within PFR28_04678 at 5337.099 kb on - strand, within PFR28_04678 at 5337.099 kb on - strand, within PFR28_04678 at 5337.170 kb on + strand at 5337.170 kb on + strand at 5337.170 kb on + strand at 5337.170 kb on + strand at 5337.171 kb on - strand at 5337.171 kb on - strand at 5337.174 kb on + strand at 5337.174 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.178 kb on + strand at 5337.179 kb on - strand at 5337.179 kb on - strand at 5337.182 kb on + strand at 5337.183 kb on - strand at 5337.204 kb on + strand at 5337.205 kb on - strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.236 kb on + strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.237 kb on - strand at 5337.400 kb on + strand, within PFR28_04679 at 5337.400 kb on + strand, within PFR28_04679 at 5337.400 kb on + strand, within PFR28_04679 at 5337.400 kb on + strand, within PFR28_04679 at 5337.401 kb on - strand, within PFR28_04679 at 5337.401 kb on - strand, within PFR28_04679 at 5337.401 kb on - strand, within PFR28_04679 at 5337.401 kb on - strand, within PFR28_04679 at 5337.544 kb on + strand, within PFR28_04679 at 5337.545 kb on - strand, within PFR28_04679 at 5337.637 kb on + strand, within PFR28_04679 at 5337.637 kb on + strand, within PFR28_04679 at 5337.661 kb on + strand, within PFR28_04679 at 5337.673 kb on + strand, within PFR28_04679 at 5337.686 kb on + strand, within PFR28_04679 at 5337.686 kb on + strand, within PFR28_04679 at 5337.686 kb on + strand, within PFR28_04679 at 5337.764 kb on - strand, within PFR28_04679 at 5337.817 kb on + strand, within PFR28_04679 at 5337.817 kb on + strand, within PFR28_04679 at 5337.817 kb on + strand, within PFR28_04679 at 5337.818 kb on - strand, within PFR28_04679 at 5337.818 kb on - strand, within PFR28_04679 at 5337.818 kb on - strand, within PFR28_04679 at 5337.818 kb on - strand, within PFR28_04679 at 5337.841 kb on + strand, within PFR28_04679 at 5337.841 kb on + strand, within PFR28_04679 at 5337.841 kb on + strand, within PFR28_04679 at 5337.842 kb on - strand, within PFR28_04679 at 5337.842 kb on - strand, within PFR28_04679 at 5337.885 kb on + strand, within PFR28_04679 at 5337.886 kb on - strand, within PFR28_04679 at 5338.056 kb on + strand at 5338.081 kb on + strand at 5338.082 kb on - strand at 5338.085 kb on + strand at 5338.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 5,335,775 + PFR28_04676 0.74 -0.7 5,335,775 + PFR28_04676 0.74 -0.1 5,335,775 + PFR28_04676 0.74 -0.4 5,335,776 - PFR28_04676 0.74 +0.3 5,335,776 - PFR28_04676 0.74 -1.5 5,335,801 - PFR28_04676 0.76 +1.2 5,335,801 - PFR28_04676 0.76 -0.1 5,335,859 + PFR28_04676 0.81 +0.1 5,335,859 + PFR28_04676 0.81 +1.0 5,335,859 + PFR28_04676 0.81 -2.3 5,335,860 - PFR28_04676 0.81 -1.1 5,335,860 - PFR28_04676 0.81 +0.1 5,335,860 - PFR28_04676 0.81 +0.3 5,335,914 + PFR28_04676 0.86 -0.5 5,335,914 + PFR28_04676 0.86 -0.5 5,335,914 + PFR28_04676 0.86 -0.6 5,335,915 - PFR28_04676 0.86 +0.6 5,335,915 - PFR28_04676 0.86 -0.4 5,335,915 - PFR28_04676 0.86 +0.2 5,335,915 - PFR28_04676 0.86 -0.5 5,335,915 - PFR28_04676 0.86 -0.1 5,335,915 - PFR28_04676 0.86 -0.1 5,335,915 - PFR28_04676 0.86 -0.5 5,335,929 - PFR28_04676 0.87 -0.9 5,335,929 - PFR28_04676 0.87 -2.0 5,335,997 + -0.3 5,335,997 + -1.2 5,335,997 + -0.3 5,335,998 - -0.4 5,335,998 - -0.4 5,335,998 - -0.1 5,336,004 + +0.3 5,336,004 + -0.1 5,336,004 + +0.6 5,336,005 - +0.3 5,336,005 - +1.1 5,336,005 - -0.6 5,336,005 - +0.1 5,336,005 - -0.3 5,336,005 - +0.5 5,336,055 + -1.5 5,336,055 + +0.1 5,336,055 + +0.6 5,336,055 + -0.7 5,336,055 + -1.1 5,336,055 + +0.5 5,336,056 - +1.3 5,336,056 - -0.0 5,336,056 - -0.6 5,336,056 - +0.9 5,336,056 - +0.0 5,336,056 - -4.7 5,336,056 - -0.1 5,336,057 + -0.4 5,336,057 + +0.4 5,336,057 + -2.1 5,336,057 + -0.1 5,336,057 + -0.9 5,336,057 + -0.3 5,336,058 - +0.6 5,336,058 - +1.1 5,336,058 - +0.7 5,336,422 + PFR28_04677 0.53 -0.3 5,336,422 + PFR28_04677 0.53 -0.3 5,336,422 + PFR28_04677 0.53 -0.1 5,336,423 - PFR28_04677 0.54 +1.0 5,336,423 - PFR28_04677 0.54 +0.4 5,336,423 - PFR28_04677 0.54 -0.6 5,336,423 - PFR28_04677 0.54 +0.6 5,336,423 - PFR28_04677 0.54 +0.2 5,336,423 - PFR28_04677 0.54 -0.6 5,336,613 + PFR28_04677 0.84 +0.2 5,336,613 + PFR28_04677 0.84 +0.2 5,336,668 + +1.1 5,336,668 + -0.9 5,337,098 + PFR28_04678 0.85 +0.9 5,337,098 + PFR28_04678 0.85 +0.8 5,337,098 + PFR28_04678 0.85 +1.2 5,337,099 - PFR28_04678 0.86 +0.8 5,337,099 - PFR28_04678 0.86 +0.5 5,337,099 - PFR28_04678 0.86 +0.1 5,337,099 - PFR28_04678 0.86 +0.3 5,337,099 - PFR28_04678 0.86 -1.7 5,337,170 + +2.4 5,337,170 + +0.3 5,337,170 + -0.9 5,337,170 + -0.4 5,337,171 - -1.6 5,337,171 - -0.5 5,337,174 + -0.9 5,337,174 + +0.5 5,337,178 + +0.4 5,337,178 + -1.3 5,337,178 + +0.6 5,337,178 + +0.3 5,337,178 + -1.4 5,337,178 + -0.3 5,337,179 - +0.2 5,337,179 - -0.8 5,337,182 + +0.3 5,337,183 - -0.2 5,337,204 + +0.5 5,337,205 - -0.8 5,337,236 + -0.1 5,337,236 + +1.2 5,337,236 + -0.6 5,337,236 + +1.8 5,337,236 + -0.5 5,337,236 + -0.8 5,337,236 + +0.4 5,337,236 + +1.3 5,337,237 - -0.5 5,337,237 - -0.7 5,337,237 - -1.9 5,337,237 - +0.5 5,337,237 - +0.8 5,337,237 - -1.0 5,337,237 - +0.4 5,337,237 - -0.3 5,337,400 + PFR28_04679 0.19 -1.3 5,337,400 + PFR28_04679 0.19 +1.3 5,337,400 + PFR28_04679 0.19 -2.5 5,337,400 + PFR28_04679 0.19 -0.0 5,337,401 - PFR28_04679 0.19 -0.7 5,337,401 - PFR28_04679 0.19 +0.7 5,337,401 - PFR28_04679 0.19 -0.3 5,337,401 - PFR28_04679 0.19 -0.3 5,337,544 + PFR28_04679 0.36 +0.1 5,337,545 - PFR28_04679 0.36 +0.8 5,337,637 + PFR28_04679 0.47 +0.1 5,337,637 + PFR28_04679 0.47 +0.4 5,337,661 + PFR28_04679 0.50 -0.7 5,337,673 + PFR28_04679 0.51 +0.8 5,337,686 + PFR28_04679 0.53 +0.9 5,337,686 + PFR28_04679 0.53 +0.8 5,337,686 + PFR28_04679 0.53 -1.1 5,337,764 - PFR28_04679 0.62 +0.4 5,337,817 + PFR28_04679 0.68 -2.3 5,337,817 + PFR28_04679 0.68 +0.2 5,337,817 + PFR28_04679 0.68 -0.4 5,337,818 - PFR28_04679 0.68 +0.0 5,337,818 - PFR28_04679 0.68 -0.5 5,337,818 - PFR28_04679 0.68 -0.1 5,337,818 - PFR28_04679 0.68 +0.3 5,337,841 + PFR28_04679 0.71 +0.6 5,337,841 + PFR28_04679 0.71 -0.6 5,337,841 + PFR28_04679 0.71 +0.2 5,337,842 - PFR28_04679 0.71 +0.4 5,337,842 - PFR28_04679 0.71 +1.4 5,337,885 + PFR28_04679 0.76 -0.2 5,337,886 - PFR28_04679 0.76 +0.5 5,338,056 + -0.4 5,338,081 + +0.3 5,338,082 - -0.5 5,338,085 + -0.6 5,338,130 + +0.4
Or see this region's nucleotide sequence