Strain Fitness in Pseudomonas sp. RS175 around PFR28_04550

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04549 and PFR28_04550 overlap by 4 nucleotidesPFR28_04550 and PFR28_04551 overlap by 4 nucleotides PFR28_04549: PFR28_04549 - O-acetyltransferase OatA, at 5,195,595 to 5,196,749 _04549 PFR28_04550: PFR28_04550 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 5,196,746 to 5,197,627 _04550 PFR28_04551: PFR28_04551 - hypothetical protein, at 5,197,624 to 5,198,916 _04551 Position (kb) 5196 5197 5198Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.842 kb on + strand, within PFR28_04549at 5195.843 kb on - strand, within PFR28_04549at 5195.852 kb on - strand, within PFR28_04549at 5195.920 kb on + strand, within PFR28_04549at 5195.920 kb on + strand, within PFR28_04549at 5195.921 kb on - strand, within PFR28_04549at 5195.921 kb on - strand, within PFR28_04549at 5195.974 kb on + strand, within PFR28_04549at 5195.975 kb on - strand, within PFR28_04549at 5195.975 kb on - strand, within PFR28_04549at 5195.975 kb on - strand, within PFR28_04549at 5196.195 kb on + strand, within PFR28_04549at 5196.196 kb on - strand, within PFR28_04549at 5196.196 kb on - strand, within PFR28_04549at 5196.259 kb on + strand, within PFR28_04549at 5196.260 kb on - strand, within PFR28_04549at 5196.289 kb on + strand, within PFR28_04549at 5196.290 kb on - strand, within PFR28_04549at 5196.307 kb on + strand, within PFR28_04549at 5196.307 kb on + strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.308 kb on - strand, within PFR28_04549at 5196.314 kb on - strand, within PFR28_04549at 5196.314 kb on - strand, within PFR28_04549at 5196.339 kb on + strand, within PFR28_04549at 5196.339 kb on + strand, within PFR28_04549at 5196.340 kb on - strand, within PFR28_04549at 5196.340 kb on - strand, within PFR28_04549at 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.675 kb on + strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.676 kb on - strandat 5196.778 kb on + strandat 5196.778 kb on + strandat 5196.901 kb on - strand, within PFR28_04550at 5197.070 kb on + strand, within PFR28_04550at 5197.070 kb on + strand, within PFR28_04550at 5197.071 kb on - strand, within PFR28_04550at 5197.071 kb on - strand, within PFR28_04550at 5197.161 kb on + strand, within PFR28_04550at 5197.161 kb on + strand, within PFR28_04550at 5197.288 kb on + strand, within PFR28_04550at 5197.289 kb on - strand, within PFR28_04550at 5197.295 kb on + strand, within PFR28_04550at 5197.296 kb on - strand, within PFR28_04550at 5197.371 kb on + strand, within PFR28_04550at 5197.371 kb on + strand, within PFR28_04550at 5197.627 kb on + strandat 5197.627 kb on + strandat 5197.627 kb on + strandat 5197.627 kb on + strandat 5197.627 kb on + strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.628 kb on - strandat 5197.781 kb on + strand, within PFR28_04551at 5197.781 kb on + strand, within PFR28_04551at 5197.781 kb on + strand, within PFR28_04551at 5197.781 kb on + strand, within PFR28_04551at 5197.781 kb on + strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.782 kb on - strand, within PFR28_04551at 5197.826 kb on + strand, within PFR28_04551at 5197.826 kb on + strand, within PFR28_04551at 5197.826 kb on + strand, within PFR28_04551at 5197.826 kb on + strand, within PFR28_04551at 5197.826 kb on + strand, within PFR28_04551at 5197.827 kb on - strand, within PFR28_04551at 5197.827 kb on - strand, within PFR28_04551at 5197.827 kb on - strand, within PFR28_04551at 5197.827 kb on - strand, within PFR28_04551at 5197.919 kb on + strand, within PFR28_04551at 5197.919 kb on + strand, within PFR28_04551at 5197.919 kb on + strand, within PFR28_04551at 5197.919 kb on + strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5197.920 kb on - strand, within PFR28_04551at 5198.024 kb on + strand, within PFR28_04551at 5198.024 kb on + strand, within PFR28_04551at 5198.025 kb on - strand, within PFR28_04551at 5198.025 kb on - strand, within PFR28_04551at 5198.025 kb on - strand, within PFR28_04551at 5198.051 kb on + strand, within PFR28_04551at 5198.052 kb on - strand, within PFR28_04551at 5198.070 kb on - strand, within PFR28_04551at 5198.099 kb on + strand, within PFR28_04551at 5198.099 kb on + strand, within PFR28_04551at 5198.099 kb on + strand, within PFR28_04551at 5198.100 kb on - strand, within PFR28_04551at 5198.100 kb on - strand, within PFR28_04551at 5198.114 kb on + strand, within PFR28_04551at 5198.114 kb on + strand, within PFR28_04551at 5198.114 kb on + strand, within PFR28_04551at 5198.115 kb on - strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.273 kb on + strand, within PFR28_04551at 5198.274 kb on - strand, within PFR28_04551at 5198.274 kb on - strand, within PFR28_04551at 5198.274 kb on - strand, within PFR28_04551at 5198.274 kb on - strand, within PFR28_04551

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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5,195,842 + PFR28_04549 0.21 -0.3
5,195,842 + PFR28_04549 0.21 -0.2
5,195,842 + PFR28_04549 0.21 -0.8
5,195,842 + PFR28_04549 0.21 -0.2
5,195,842 + PFR28_04549 0.21 -1.2
5,195,842 + PFR28_04549 0.21 -1.2
5,195,842 + PFR28_04549 0.21 -0.7
5,195,842 + PFR28_04549 0.21 +0.3
5,195,842 + PFR28_04549 0.21 -0.2
5,195,843 - PFR28_04549 0.21 -0.2
5,195,852 - PFR28_04549 0.22 -0.9
5,195,920 + PFR28_04549 0.28 +0.1
5,195,920 + PFR28_04549 0.28 -0.9
5,195,921 - PFR28_04549 0.28 +0.7
5,195,921 - PFR28_04549 0.28 +1.4
5,195,974 + PFR28_04549 0.33 -0.7
5,195,975 - PFR28_04549 0.33 +0.8
5,195,975 - PFR28_04549 0.33 -0.5
5,195,975 - PFR28_04549 0.33 +0.6
5,196,195 + PFR28_04549 0.52 -0.1
5,196,196 - PFR28_04549 0.52 +1.3
5,196,196 - PFR28_04549 0.52 -0.4
5,196,259 + PFR28_04549 0.57 -1.5
5,196,260 - PFR28_04549 0.58 -0.5
5,196,289 + PFR28_04549 0.60 +0.3
5,196,290 - PFR28_04549 0.60 -1.2
5,196,307 + PFR28_04549 0.62 -0.9
5,196,307 + PFR28_04549 0.62 +1.2
5,196,308 - PFR28_04549 0.62 -0.1
5,196,308 - PFR28_04549 0.62 -0.0
5,196,308 - PFR28_04549 0.62 -0.9
5,196,308 - PFR28_04549 0.62 +0.4
5,196,308 - PFR28_04549 0.62 -0.4
5,196,308 - PFR28_04549 0.62 -0.2
5,196,314 - PFR28_04549 0.62 +0.7
5,196,314 - PFR28_04549 0.62 -0.3
5,196,339 + PFR28_04549 0.64 -1.4
5,196,339 + PFR28_04549 0.64 +1.2
5,196,340 - PFR28_04549 0.65 +0.5
5,196,340 - PFR28_04549 0.65 -1.3
5,196,675 + +0.5
5,196,675 + -0.5
5,196,675 + +2.0
5,196,675 + +0.0
5,196,675 + +0.0
5,196,675 + -0.3
5,196,675 + +0.4
5,196,675 + +1.5
5,196,675 + +0.9
5,196,675 + +0.5
5,196,675 + -0.3
5,196,675 + +0.7
5,196,676 - +0.3
5,196,676 - -0.7
5,196,676 - -0.4
5,196,676 - +0.4
5,196,676 - +1.3
5,196,676 - -0.6
5,196,676 - -0.9
5,196,676 - +0.2
5,196,676 - +0.0
5,196,676 - +0.3
5,196,676 - -0.6
5,196,676 - -0.5
5,196,676 - -0.0
5,196,676 - -0.3
5,196,676 - +0.8
5,196,676 - -0.3
5,196,676 - -0.5
5,196,676 - -1.5
5,196,676 - +1.3
5,196,676 - +0.2
5,196,778 + +0.3
5,196,778 + +0.1
5,196,901 - PFR28_04550 0.18 +0.8
5,197,070 + PFR28_04550 0.37 +0.7
5,197,070 + PFR28_04550 0.37 -1.4
5,197,071 - PFR28_04550 0.37 +1.0
5,197,071 - PFR28_04550 0.37 +0.0
5,197,161 + PFR28_04550 0.47 +1.6
5,197,161 + PFR28_04550 0.47 +0.7
5,197,288 + PFR28_04550 0.61 -0.2
5,197,289 - PFR28_04550 0.62 -2.6
5,197,295 + PFR28_04550 0.62 +0.2
5,197,296 - PFR28_04550 0.62 +0.0
5,197,371 + PFR28_04550 0.71 +1.0
5,197,371 + PFR28_04550 0.71 -1.1
5,197,627 + +0.5
5,197,627 + -0.3
5,197,627 + -0.2
5,197,627 + +0.0
5,197,627 + +0.5
5,197,628 - +0.1
5,197,628 - +1.4
5,197,628 - +0.7
5,197,628 - -0.0
5,197,628 - +0.1
5,197,628 - -0.5
5,197,628 - +1.5
5,197,781 + PFR28_04551 0.12 -1.0
5,197,781 + PFR28_04551 0.12 +0.4
5,197,781 + PFR28_04551 0.12 +0.2
5,197,781 + PFR28_04551 0.12 +0.1
5,197,781 + PFR28_04551 0.12 +3.3
5,197,782 - PFR28_04551 0.12 +0.1
5,197,782 - PFR28_04551 0.12 +0.5
5,197,782 - PFR28_04551 0.12 +1.5
5,197,782 - PFR28_04551 0.12 -0.1
5,197,782 - PFR28_04551 0.12 -0.5
5,197,782 - PFR28_04551 0.12 +0.8
5,197,782 - PFR28_04551 0.12 +0.8
5,197,782 - PFR28_04551 0.12 +0.4
5,197,826 + PFR28_04551 0.16 +0.6
5,197,826 + PFR28_04551 0.16 -0.1
5,197,826 + PFR28_04551 0.16 +0.1
5,197,826 + PFR28_04551 0.16 -0.2
5,197,826 + PFR28_04551 0.16 -0.4
5,197,827 - PFR28_04551 0.16 -0.6
5,197,827 - PFR28_04551 0.16 +0.7
5,197,827 - PFR28_04551 0.16 -0.0
5,197,827 - PFR28_04551 0.16 +0.2
5,197,919 + PFR28_04551 0.23 +1.7
5,197,919 + PFR28_04551 0.23 +0.2
5,197,919 + PFR28_04551 0.23 -1.4
5,197,919 + PFR28_04551 0.23 +0.1
5,197,920 - PFR28_04551 0.23 +0.3
5,197,920 - PFR28_04551 0.23 -0.4
5,197,920 - PFR28_04551 0.23 -0.2
5,197,920 - PFR28_04551 0.23 -1.3
5,197,920 - PFR28_04551 0.23 +0.2
5,197,920 - PFR28_04551 0.23 -1.1
5,198,024 + PFR28_04551 0.31 +0.0
5,198,024 + PFR28_04551 0.31 -0.9
5,198,025 - PFR28_04551 0.31 -0.0
5,198,025 - PFR28_04551 0.31 -0.6
5,198,025 - PFR28_04551 0.31 +1.0
5,198,051 + PFR28_04551 0.33 -0.5
5,198,052 - PFR28_04551 0.33 +0.4
5,198,070 - PFR28_04551 0.34 +0.7
5,198,099 + PFR28_04551 0.37 -0.0
5,198,099 + PFR28_04551 0.37 -0.8
5,198,099 + PFR28_04551 0.37 +0.1
5,198,100 - PFR28_04551 0.37 -0.3
5,198,100 - PFR28_04551 0.37 +0.7
5,198,114 + PFR28_04551 0.38 +1.2
5,198,114 + PFR28_04551 0.38 -1.7
5,198,114 + PFR28_04551 0.38 +0.1
5,198,115 - PFR28_04551 0.38 -0.2
5,198,273 + PFR28_04551 0.50 -0.4
5,198,273 + PFR28_04551 0.50 +0.1
5,198,273 + PFR28_04551 0.50 -1.1
5,198,273 + PFR28_04551 0.50 +0.6
5,198,273 + PFR28_04551 0.50 +0.7
5,198,273 + PFR28_04551 0.50 +0.1
5,198,273 + PFR28_04551 0.50 -0.0
5,198,273 + PFR28_04551 0.50 -0.4
5,198,274 - PFR28_04551 0.50 +0.2
5,198,274 - PFR28_04551 0.50 -1.3
5,198,274 - PFR28_04551 0.50 +0.1
5,198,274 - PFR28_04551 0.50 -1.0

Or see this region's nucleotide sequence