Strain Fitness in Pseudomonas sp. RS175 around PFR28_03106

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sn-glycero-3-phosphocholine (C) 10 mM
3,611,491	+		PFR28_03105	0.27	-0.8
3,611,491	+		PFR28_03105	0.27	+0.4
3,611,491	+		PFR28_03105	0.27	+1.0
3,611,507	-		PFR28_03105	0.28	+0.3
3,611,509	+		PFR28_03105	0.28	-0.1
3,611,509	+		PFR28_03105	0.28	+1.0
3,611,509	+		PFR28_03105	0.28	+0.7
3,611,509	+		PFR28_03105	0.28	-0.4
3,611,509	+		PFR28_03105	0.28	+0.5
3,611,509	+		PFR28_03105	0.28	+0.4
3,611,509	+		PFR28_03105	0.28	+1.5
3,611,509	+		PFR28_03105	0.28	+0.1
3,611,510	-		PFR28_03105	0.28	+0.8
3,611,510	-		PFR28_03105	0.28	+0.7
3,611,510	-		PFR28_03105	0.28	+1.1
3,611,510	-		PFR28_03105	0.28	+2.6
3,611,510	-		PFR28_03105	0.28	+0.5
3,611,510	-		PFR28_03105	0.28	-0.0
3,611,510	-		PFR28_03105	0.28	+1.4
3,611,510	-		PFR28_03105	0.28	+1.5
3,611,510	-		PFR28_03105	0.28	-0.6
3,611,510	-		PFR28_03105	0.28	-0.6
3,611,623	+		PFR28_03105	0.37	+0.4
3,611,623	+		PFR28_03105	0.37	-0.8
3,611,624	-		PFR28_03105	0.37	+1.8
3,611,663	+		PFR28_03105	0.40	-0.6
3,611,664	-		PFR28_03105	0.40	+0.4
3,611,664	-		PFR28_03105	0.40	+0.7
3,611,677	+		PFR28_03105	0.41	+0.4
3,611,677	+		PFR28_03105	0.41	-1.1
3,611,677	+		PFR28_03105	0.41	-0.1
3,611,678	-		PFR28_03105	0.41	+1.0
3,611,678	-		PFR28_03105	0.41	+1.2
3,611,678	-		PFR28_03105	0.41	+1.4
3,611,680	+		PFR28_03105	0.41	-0.6
3,611,680	+		PFR28_03105	0.41	-1.1
3,611,680	+		PFR28_03105	0.41	+0.6
3,611,680	+		PFR28_03105	0.41	+2.2
3,611,680	+		PFR28_03105	0.41	-0.0
3,611,681	-		PFR28_03105	0.41	+1.7
3,611,681	-		PFR28_03105	0.41	+0.2
3,611,681	-		PFR28_03105	0.41	+1.3
3,611,694	+		PFR28_03105	0.42	+1.0
3,611,797	+		PFR28_03105	0.50	+1.4
3,611,797	+		PFR28_03105	0.50	-0.6
3,611,797	+		PFR28_03105	0.50	+0.9
3,611,797	+		PFR28_03105	0.50	+0.2
3,611,798	-		PFR28_03105	0.50	+1.6
3,611,798	-		PFR28_03105	0.50	+1.2
3,611,798	-		PFR28_03105	0.50	+0.5
3,611,798	-		PFR28_03105	0.50	+0.4
3,611,798	-		PFR28_03105	0.50	+0.4
3,611,798	-		PFR28_03105	0.50	+1.7
3,611,798	-		PFR28_03105	0.50	+1.1
3,611,798	-		PFR28_03105	0.50	+1.5
3,611,798	-		PFR28_03105	0.50	+1.9
3,611,798	-		PFR28_03105	0.50	+1.4
3,611,798	-		PFR28_03105	0.50	+1.2
3,611,847	+		PFR28_03105	0.54	+1.1
3,611,848	-		PFR28_03105	0.54	+1.2
3,611,869	+		PFR28_03105	0.56	+2.9
3,611,869	+		PFR28_03105	0.56	-0.4
3,611,869	+		PFR28_03105	0.56	+0.0
3,611,870	-		PFR28_03105	0.56	+1.1
3,611,870	-		PFR28_03105	0.56	+1.7
3,611,870	-		PFR28_03105	0.56	+0.3
3,611,870	-		PFR28_03105	0.56	+0.4
3,611,870	-		PFR28_03105	0.56	+1.0
3,611,870	-		PFR28_03105	0.56	+0.4
3,611,870	-		PFR28_03105	0.56	+1.1
3,611,899	+		PFR28_03105	0.58	-0.7
3,611,900	-		PFR28_03105	0.58	+3.3
3,611,917	+		PFR28_03105	0.60	-1.0
3,611,917	+		PFR28_03105	0.60	+0.2
3,611,918	-		PFR28_03105	0.60	+1.0
3,611,918	-		PFR28_03105	0.60	+1.8
3,611,945	-		PFR28_03105	0.62	+1.1
3,611,945	-		PFR28_03105	0.62	+0.8
3,611,945	-		PFR28_03105	0.62	+0.9
3,611,945	-		PFR28_03105	0.62	+0.9
3,611,945	-		PFR28_03105	0.62	+1.8
3,611,945	-		PFR28_03105	0.62	+3.3
3,612,154	+		PFR28_03105	0.78	-0.4
3,612,154	+		PFR28_03105	0.78	+0.6
3,612,154	+		PFR28_03105	0.78	-0.5
3,612,154	+		PFR28_03105	0.78	+1.1
3,612,154	+		PFR28_03105	0.78	+0.4
3,612,154	+		PFR28_03105	0.78	+0.9
3,612,154	+		PFR28_03105	0.78	+0.4
3,612,155	-		PFR28_03105	0.78	+1.3
3,612,155	-		PFR28_03105	0.78	+0.4
3,612,155	-		PFR28_03105	0.78	+0.8
3,612,238	+		PFR28_03105	0.84	+0.4
3,612,238	+		PFR28_03105	0.84	+0.2
3,612,238	+		PFR28_03105	0.84	-0.6
3,612,238	+		PFR28_03105	0.84	-0.0
3,612,239	-		PFR28_03105	0.84	+1.6
3,612,239	-		PFR28_03105	0.84	+1.8
3,612,253	+		PFR28_03105	0.85	+0.7
3,612,254	-		PFR28_03105	0.86	-0.7
3,612,254	-		PFR28_03105	0.86	+0.4
3,612,254	-		PFR28_03105	0.86	+0.8
3,612,365	-				+0.7
3,612,393	+				-1.1
3,612,393	+				+0.9
3,612,393	+				+1.1
3,612,393	+				-0.1
3,612,393	+				+0.6
3,612,393	+				+1.0
3,612,393	+				+2.4
3,612,393	+				+0.3
3,612,394	-				+0.9
3,612,394	-				+1.1
3,612,394	-				-0.8
3,612,394	-				+0.6
3,612,394	-				+1.0
3,612,394	-				+0.7
3,612,397	+				-1.3
3,612,397	+				+0.6
3,612,397	+				-0.9
3,612,398	-				-0.8
3,612,398	-				+0.2
3,612,439	+				-1.6
3,612,439	+				+0.7
3,612,443	+				-0.4
3,612,443	+				+0.9
3,612,443	+				-0.1
3,612,444	-				-0.1
3,612,444	-				+0.1
3,612,444	-				+1.7
3,612,444	-				+0.7
3,612,623	+		PFR28_03106	0.24	+0.8
3,612,623	+		PFR28_03106	0.24	+0.1
3,612,623	+		PFR28_03106	0.24	-0.9
3,612,624	-		PFR28_03106	0.24	+0.7
3,612,624	-		PFR28_03106	0.24	+2.3
3,612,624	-		PFR28_03106	0.24	+0.9
3,612,624	-		PFR28_03106	0.24	+1.0
3,612,656	+		PFR28_03106	0.28	+1.1
3,612,657	-		PFR28_03106	0.28	+1.4
3,612,668	+		PFR28_03106	0.30	-0.2
3,612,668	+		PFR28_03106	0.30	+1.4
3,612,669	-		PFR28_03106	0.30	+0.7
3,612,716	+		PFR28_03106	0.36	+0.0
3,612,716	+		PFR28_03106	0.36	-0.1
3,612,716	+		PFR28_03106	0.36	+0.0
3,612,716	+		PFR28_03106	0.36	+2.2
3,612,716	+		PFR28_03106	0.36	-0.6
3,612,717	-		PFR28_03106	0.36	+0.9
3,612,717	-		PFR28_03106	0.36	+1.1
3,612,717	-		PFR28_03106	0.36	+2.8
3,612,717	-		PFR28_03106	0.36	+0.9
3,612,944	+		PFR28_03106	0.65	+1.6
3,612,944	+		PFR28_03106	0.65	+2.4
3,612,944	+		PFR28_03106	0.65	+0.2
3,612,944	+		PFR28_03106	0.65	+1.6
3,612,944	+		PFR28_03106	0.65	+1.3
3,612,944	+		PFR28_03106	0.65	+0.9
3,612,944	+		PFR28_03106	0.65	+0.1
3,612,945	-		PFR28_03106	0.65	+0.9
3,612,945	-		PFR28_03106	0.65	+0.5
3,612,945	-		PFR28_03106	0.65	+0.9
3,612,945	-		PFR28_03106	0.65	+1.2
3,612,945	-		PFR28_03106	0.65	+0.7
3,612,945	-		PFR28_03106	0.65	+1.2
3,612,945	-		PFR28_03106	0.65	+1.0
3,612,945	-		PFR28_03106	0.65	-0.4
3,612,965	+		PFR28_03106	0.67	+1.3
3,612,965	+		PFR28_03106	0.67	+1.1
3,612,965	+		PFR28_03106	0.67	+1.2
3,612,966	-		PFR28_03106	0.67	-0.8
3,612,966	-		PFR28_03106	0.67	+1.6
3,612,966	-		PFR28_03106	0.67	+2.4
3,612,966	-		PFR28_03106	0.67	+3.2
3,612,973	-		PFR28_03106	0.68	+1.4
3,613,006	+		PFR28_03106	0.72	+1.0
3,613,006	+		PFR28_03106	0.72	+2.2
3,613,007	-		PFR28_03106	0.73	+1.3
3,613,028	+		PFR28_03106	0.75	+1.0
3,613,028	+		PFR28_03106	0.75	+1.3
3,613,029	-		PFR28_03106	0.75	+1.4
3,613,029	-		PFR28_03106	0.75	+2.7
3,613,166	+				-0.6
3,613,167	-				+1.8
3,613,181	+				+1.8
3,613,181	+				+0.5
3,613,182	-				+0.4
3,613,182	-				+0.5
3,613,182	-				+0.4
3,613,182	-				+1.1
3,613,188	-				+0.7
3,613,188	-				+1.6
3,613,336	+				-0.1
3,613,336	+				-0.1
3,613,336	+				+0.1
3,613,336	+				-0.1
3,613,336	+				+0.3
3,613,337	-				-0.3
3,613,337	-				+0.6
3,613,337	-				+0.4
3,613,337	-				+0.5
3,613,337	-				-1.4
3,613,356	+				+0.9
3,613,459	+		PFR28_03107	0.11	+1.4
3,613,593	+		PFR28_03107	0.26	+0.3
3,613,593	+		PFR28_03107	0.26	+0.1
3,613,593	+		PFR28_03107	0.26	+0.0
3,613,593	+		PFR28_03107	0.26	-1.6
3,613,593	+		PFR28_03107	0.26	+0.2
3,613,593	+		PFR28_03107	0.26	+0.9
3,613,594	-		PFR28_03107	0.26	+0.4
3,613,594	-		PFR28_03107	0.26	+0.6
3,613,594	-		PFR28_03107	0.26	+0.8
3,613,594	-		PFR28_03107	0.26	+0.3
3,613,594	-		PFR28_03107	0.26	-0.9
3,613,594	-		PFR28_03107	0.26	-0.5
3,613,704	+		PFR28_03107	0.38	+0.5
3,613,704	+		PFR28_03107	0.38	+0.1
3,613,705	-		PFR28_03107	0.38	+0.1
3,613,980	+		PFR28_03107	0.68	+1.0
3,613,980	+		PFR28_03107	0.68	-0.4
3,613,981	-		PFR28_03107	0.68	+1.1
3,614,021	+		PFR28_03107	0.73	+0.3
3,614,022	-		PFR28_03107	0.73	-0.6