Strain Fitness in Pseudomonas sp. RS175 around PFR28_01646

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01644 and PFR28_01645 are separated by 2 nucleotidesPFR28_01645 and PFR28_01646 are separated by 194 nucleotidesPFR28_01646 and PFR28_01647 are separated by 142 nucleotides PFR28_01644: PFR28_01644 - hypothetical protein, at 1,827,474 to 1,827,836 _01644 PFR28_01645: PFR28_01645 - hypothetical protein, at 1,827,839 to 1,828,369 _01645 PFR28_01646: PFR28_01646 - hypothetical protein, at 1,828,564 to 1,828,791 _01646 PFR28_01647: PFR28_01647 - Beta-Ala-Xaa dipeptidase, at 1,828,934 to 1,830,673 _01647 Position (kb) 1828 1829Strain fitness (log2 ratio) -3 -2 -1 0 1at 1827.727 kb on + strand, within PFR28_01644at 1827.728 kb on - strand, within PFR28_01644at 1827.882 kb on + strandat 1827.935 kb on - strand, within PFR28_01645at 1827.990 kb on + strand, within PFR28_01645at 1827.990 kb on + strand, within PFR28_01645at 1827.990 kb on + strand, within PFR28_01645at 1827.990 kb on + strand, within PFR28_01645at 1827.990 kb on + strand, within PFR28_01645at 1827.991 kb on - strand, within PFR28_01645at 1827.995 kb on - strand, within PFR28_01645at 1828.251 kb on + strand, within PFR28_01645at 1828.252 kb on - strand, within PFR28_01645at 1828.303 kb on - strand, within PFR28_01645at 1828.406 kb on + strandat 1828.406 kb on + strandat 1828.425 kb on + strandat 1828.426 kb on - strandat 1828.436 kb on - strandat 1828.519 kb on + strandat 1828.527 kb on + strandat 1828.528 kb on - strandat 1828.538 kb on + strandat 1828.538 kb on + strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.539 kb on - strandat 1828.605 kb on + strand, within PFR28_01646at 1828.605 kb on + strand, within PFR28_01646at 1828.606 kb on - strand, within PFR28_01646at 1828.606 kb on - strand, within PFR28_01646at 1828.827 kb on + strandat 1828.827 kb on + strandat 1828.828 kb on - strandat 1828.885 kb on + strandat 1828.886 kb on - strandat 1828.935 kb on + strandat 1828.935 kb on + strandat 1828.936 kb on - strandat 1828.936 kb on - strandat 1828.936 kb on - strandat 1828.936 kb on - strandat 1828.936 kb on - strandat 1829.040 kb on + strandat 1829.040 kb on + strandat 1829.041 kb on - strandat 1829.041 kb on - strandat 1829.102 kb on - strandat 1829.102 kb on - strandat 1829.196 kb on + strand, within PFR28_01647at 1829.197 kb on - strand, within PFR28_01647at 1829.218 kb on - strand, within PFR28_01647at 1829.296 kb on + strand, within PFR28_01647at 1829.296 kb on + strand, within PFR28_01647at 1829.361 kb on + strand, within PFR28_01647at 1829.361 kb on + strand, within PFR28_01647at 1829.361 kb on + strand, within PFR28_01647at 1829.362 kb on - strand, within PFR28_01647at 1829.362 kb on - strand, within PFR28_01647at 1829.430 kb on + strand, within PFR28_01647at 1829.430 kb on + strand, within PFR28_01647at 1829.457 kb on + strand, within PFR28_01647

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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1,827,727 + PFR28_01644 0.70 -0.4
1,827,728 - PFR28_01644 0.70 +0.0
1,827,882 + -1.2
1,827,935 - PFR28_01645 0.18 +0.6
1,827,990 + PFR28_01645 0.28 +0.0
1,827,990 + PFR28_01645 0.28 +0.5
1,827,990 + PFR28_01645 0.28 +0.6
1,827,990 + PFR28_01645 0.28 -0.1
1,827,990 + PFR28_01645 0.28 -0.7
1,827,991 - PFR28_01645 0.29 -0.9
1,827,995 - PFR28_01645 0.29 +1.5
1,828,251 + PFR28_01645 0.78 +0.3
1,828,252 - PFR28_01645 0.78 -0.3
1,828,303 - PFR28_01645 0.87 -2.2
1,828,406 + -0.6
1,828,406 + -0.1
1,828,425 + -0.1
1,828,426 - -0.9
1,828,436 - -0.4
1,828,519 + +0.5
1,828,527 + -0.5
1,828,528 - +0.0
1,828,538 + -0.2
1,828,538 + +0.1
1,828,539 - -0.3
1,828,539 - -1.0
1,828,539 - -0.5
1,828,539 - -0.1
1,828,539 - -0.2
1,828,539 - -1.0
1,828,539 - +0.6
1,828,539 - -1.5
1,828,539 - -0.4
1,828,605 + PFR28_01646 0.18 -0.4
1,828,605 + PFR28_01646 0.18 +1.3
1,828,606 - PFR28_01646 0.18 +0.6
1,828,606 - PFR28_01646 0.18 +0.1
1,828,827 + +0.6
1,828,827 + +0.4
1,828,828 - -0.4
1,828,885 + +1.0
1,828,886 - -1.4
1,828,935 + -0.6
1,828,935 + +0.3
1,828,936 - -0.1
1,828,936 - +0.7
1,828,936 - +0.0
1,828,936 - -3.0
1,828,936 - -0.6
1,829,040 + +0.2
1,829,040 + -0.4
1,829,041 - +0.3
1,829,041 - +0.4
1,829,102 - -0.7
1,829,102 - -0.6
1,829,196 + PFR28_01647 0.15 +0.8
1,829,197 - PFR28_01647 0.15 +0.3
1,829,218 - PFR28_01647 0.16 +0.5
1,829,296 + PFR28_01647 0.21 +1.7
1,829,296 + PFR28_01647 0.21 +0.9
1,829,361 + PFR28_01647 0.25 -0.8
1,829,361 + PFR28_01647 0.25 +0.2
1,829,361 + PFR28_01647 0.25 -0.5
1,829,362 - PFR28_01647 0.25 +0.6
1,829,362 - PFR28_01647 0.25 -0.0
1,829,430 + PFR28_01647 0.29 +0.0
1,829,430 + PFR28_01647 0.29 +0.6
1,829,457 + PFR28_01647 0.30 -1.3

Or see this region's nucleotide sequence